Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS08625

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS08620 and BWI76_RS08625 are separated by 9 nucleotidesBWI76_RS08625 and BWI76_RS08630 are separated by 205 nucleotides BWI76_RS08620: BWI76_RS08620 - galactose-1-phosphate uridylyltransferase, at 1,818,272 to 1,819,318 _RS08620 BWI76_RS08625: BWI76_RS08625 - UDP-glucose 4-epimerase GalE, at 1,819,328 to 1,820,339 _RS08625 BWI76_RS08630: BWI76_RS08630 - molybdate ABC transporter ATP-binding protein ModF, at 1,820,545 to 1,822,020 _RS08630 Position (kb) 1819 1820 1821Strain fitness (log2 ratio) -2 -1 0 1 2at 1818.842 kb on + strand, within BWI76_RS08620at 1818.920 kb on + strand, within BWI76_RS08620at 1818.974 kb on - strand, within BWI76_RS08620at 1818.984 kb on - strand, within BWI76_RS08620at 1819.150 kb on - strand, within BWI76_RS08620at 1819.150 kb on - strand, within BWI76_RS08620at 1819.567 kb on - strand, within BWI76_RS08625at 1819.866 kb on - strand, within BWI76_RS08625at 1820.532 kb on + strandat 1820.540 kb on - strandat 1820.598 kb on + strandat 1820.623 kb on - strandat 1820.672 kb on + strandat 1820.706 kb on + strand, within BWI76_RS08630at 1820.721 kb on + strand, within BWI76_RS08630at 1820.890 kb on - strand, within BWI76_RS08630at 1821.077 kb on + strand, within BWI76_RS08630at 1821.092 kb on - strand, within BWI76_RS08630

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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1,818,842 + BWI76_RS08620 0.54 -2.1
1,818,920 + BWI76_RS08620 0.62 +1.0
1,818,974 - BWI76_RS08620 0.67 +2.1
1,818,984 - BWI76_RS08620 0.68 -1.4
1,819,150 - BWI76_RS08620 0.84 -2.1
1,819,150 - BWI76_RS08620 0.84 +0.2
1,819,567 - BWI76_RS08625 0.24 +0.6
1,819,866 - BWI76_RS08625 0.53 -0.1
1,820,532 + -0.9
1,820,540 - -0.7
1,820,598 + +0.2
1,820,623 - -0.1
1,820,672 + +0.9
1,820,706 + BWI76_RS08630 0.11 -0.1
1,820,721 + BWI76_RS08630 0.12 +0.1
1,820,890 - BWI76_RS08630 0.23 -1.4
1,821,077 + BWI76_RS08630 0.36 -1.3
1,821,092 - BWI76_RS08630 0.37 +0.5

Or see this region's nucleotide sequence