Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS08605

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS08600 and BWI76_RS08605 are separated by 68 nucleotidesBWI76_RS08605 and BWI76_RS08610 are separated by 328 nucleotides BWI76_RS08600: BWI76_RS08600 - 3-deoxy-7-phosphoheptulonate synthase, at 1,813,882 to 1,814,934 _RS08600 BWI76_RS08605: BWI76_RS08605 - phosphoglyceromutase, at 1,815,003 to 1,815,755 _RS08605 BWI76_RS08610: BWI76_RS08610 - galactose-1-epimerase, at 1,816,084 to 1,817,127 _RS08610 Position (kb) 1815 1816Strain fitness (log2 ratio) -1 0 1 2 3at 1814.066 kb on - strand, within BWI76_RS08600at 1814.104 kb on + strand, within BWI76_RS08600at 1814.266 kb on - strand, within BWI76_RS08600at 1814.609 kb on - strand, within BWI76_RS08600at 1814.653 kb on - strand, within BWI76_RS08600at 1815.018 kb on - strandat 1815.048 kb on + strandat 1815.204 kb on - strand, within BWI76_RS08605at 1815.288 kb on - strand, within BWI76_RS08605at 1815.423 kb on - strand, within BWI76_RS08605at 1815.890 kb on + strandat 1815.950 kb on + strandat 1815.956 kb on + strandat 1815.959 kb on - strandat 1815.992 kb on - strandat 1815.993 kb on - strandat 1816.223 kb on + strand, within BWI76_RS08610at 1816.238 kb on - strand, within BWI76_RS08610at 1816.279 kb on - strand, within BWI76_RS08610at 1816.305 kb on - strand, within BWI76_RS08610at 1816.344 kb on - strand, within BWI76_RS08610at 1816.479 kb on - strand, within BWI76_RS08610

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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1,814,066 - BWI76_RS08600 0.17 +2.9
1,814,104 + BWI76_RS08600 0.21 -0.3
1,814,266 - BWI76_RS08600 0.36 -0.8
1,814,609 - BWI76_RS08600 0.69 +1.0
1,814,653 - BWI76_RS08600 0.73 -0.5
1,815,018 - -0.5
1,815,048 + +1.1
1,815,204 - BWI76_RS08605 0.27 +0.5
1,815,288 - BWI76_RS08605 0.38 -1.0
1,815,423 - BWI76_RS08605 0.56 +1.9
1,815,890 + -0.5
1,815,950 + -0.6
1,815,956 + -1.7
1,815,959 - +1.3
1,815,992 - +0.6
1,815,993 - -0.6
1,816,223 + BWI76_RS08610 0.13 +1.2
1,816,238 - BWI76_RS08610 0.15 -0.8
1,816,279 - BWI76_RS08610 0.19 +0.8
1,816,305 - BWI76_RS08610 0.21 +0.2
1,816,344 - BWI76_RS08610 0.25 +0.7
1,816,479 - BWI76_RS08610 0.38 -1.0

Or see this region's nucleotide sequence