Experiment: Taped volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27515 and BWI76_RS27520 are separated by 99 nucleotides BWI76_RS27520 and BWI76_RS27525 are separated by 287 nucleotides
BWI76_RS27515: BWI76_RS27515 - glycerol kinase, at 5,708,315 to 5,709,826
_RS27515
BWI76_RS27520: BWI76_RS27520 - sodium/glutamate symporter, at 5,709,926 to 5,711,128
_RS27520
BWI76_RS27525: BWI76_RS27525 - xanthine permease XanP, at 5,711,416 to 5,712,807
_RS27525
Position (kb) 5709
5710
5711
5712 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5708.984 kb on + strand, within BWI76_RS27515 at 5708.995 kb on + strand, within BWI76_RS27515 at 5709.071 kb on + strand, within BWI76_RS27515 at 5709.084 kb on - strand, within BWI76_RS27515 at 5709.131 kb on - strand, within BWI76_RS27515 at 5709.173 kb on + strand, within BWI76_RS27515 at 5709.532 kb on - strand, within BWI76_RS27515 at 5709.612 kb on + strand, within BWI76_RS27515 at 5709.648 kb on - strand, within BWI76_RS27515 at 5709.684 kb on + strand at 5709.904 kb on - strand at 5709.956 kb on - strand at 5710.055 kb on - strand, within BWI76_RS27520 at 5710.100 kb on + strand, within BWI76_RS27520 at 5710.141 kb on - strand, within BWI76_RS27520 at 5710.163 kb on - strand, within BWI76_RS27520 at 5710.266 kb on + strand, within BWI76_RS27520 at 5710.443 kb on - strand, within BWI76_RS27520 at 5710.891 kb on + strand, within BWI76_RS27520 at 5711.140 kb on + strand at 5711.399 kb on + strand at 5711.513 kb on + strand at 5711.541 kb on - strand at 5711.593 kb on + strand, within BWI76_RS27525 at 5711.601 kb on - strand, within BWI76_RS27525 at 5711.601 kb on - strand, within BWI76_RS27525 at 5711.601 kb on - strand, within BWI76_RS27525 at 5711.696 kb on + strand, within BWI76_RS27525 at 5711.706 kb on + strand, within BWI76_RS27525 at 5711.734 kb on - strand, within BWI76_RS27525 at 5711.756 kb on - strand, within BWI76_RS27525 at 5711.780 kb on + strand, within BWI76_RS27525 at 5711.819 kb on - strand, within BWI76_RS27525 at 5711.837 kb on + strand, within BWI76_RS27525 at 5711.842 kb on - strand, within BWI76_RS27525 at 5711.842 kb on - strand, within BWI76_RS27525 at 5711.845 kb on - strand, within BWI76_RS27525 at 5711.848 kb on + strand, within BWI76_RS27525 at 5711.888 kb on - strand, within BWI76_RS27525 at 5711.908 kb on + strand, within BWI76_RS27525 at 5711.952 kb on - strand, within BWI76_RS27525 at 5711.990 kb on + strand, within BWI76_RS27525 at 5712.073 kb on - strand, within BWI76_RS27525
Per-strain Table
Position Strand Gene LocusTag Fraction Taped volatile agar plate with Trichoderma atroviridae IMI remove 5,708,984 + BWI76_RS27515 0.44 -1.9 5,708,995 + BWI76_RS27515 0.45 +1.1 5,709,071 + BWI76_RS27515 0.50 +0.6 5,709,084 - BWI76_RS27515 0.51 -0.7 5,709,131 - BWI76_RS27515 0.54 +0.5 5,709,173 + BWI76_RS27515 0.57 -0.9 5,709,532 - BWI76_RS27515 0.80 -0.8 5,709,612 + BWI76_RS27515 0.86 -0.7 5,709,648 - BWI76_RS27515 0.88 -1.1 5,709,684 + +2.1 5,709,904 - -0.2 5,709,956 - -0.1 5,710,055 - BWI76_RS27520 0.11 -2.1 5,710,100 + BWI76_RS27520 0.14 -3.6 5,710,141 - BWI76_RS27520 0.18 -1.8 5,710,163 - BWI76_RS27520 0.20 -0.1 5,710,266 + BWI76_RS27520 0.28 -2.3 5,710,443 - BWI76_RS27520 0.43 -2.4 5,710,891 + BWI76_RS27520 0.80 +0.1 5,711,140 + +0.2 5,711,399 + -2.0 5,711,513 + +0.6 5,711,541 - -1.6 5,711,593 + BWI76_RS27525 0.13 -0.4 5,711,601 - BWI76_RS27525 0.13 -3.7 5,711,601 - BWI76_RS27525 0.13 +0.5 5,711,601 - BWI76_RS27525 0.13 +1.9 5,711,696 + BWI76_RS27525 0.20 -2.1 5,711,706 + BWI76_RS27525 0.21 +1.8 5,711,734 - BWI76_RS27525 0.23 +0.2 5,711,756 - BWI76_RS27525 0.24 -0.6 5,711,780 + BWI76_RS27525 0.26 +2.0 5,711,819 - BWI76_RS27525 0.29 -1.3 5,711,837 + BWI76_RS27525 0.30 +0.3 5,711,842 - BWI76_RS27525 0.31 +1.1 5,711,842 - BWI76_RS27525 0.31 -0.8 5,711,845 - BWI76_RS27525 0.31 +0.9 5,711,848 + BWI76_RS27525 0.31 +0.6 5,711,888 - BWI76_RS27525 0.34 +0.0 5,711,908 + BWI76_RS27525 0.35 -0.2 5,711,952 - BWI76_RS27525 0.39 +3.0 5,711,990 + BWI76_RS27525 0.41 +0.0 5,712,073 - BWI76_RS27525 0.47 -0.1
Or see this region's nucleotide sequence