Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19785

Experiment: Taped volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19780 and BWI76_RS19785 are separated by 9 nucleotidesBWI76_RS19785 and BWI76_RS19790 overlap by 1 nucleotides BWI76_RS19780: BWI76_RS19780 - antibiotic ABC transporter substrate-binding protein, at 4,135,688 to 4,137,493 _RS19780 BWI76_RS19785: BWI76_RS19785 - microcin C ABC transporter permease YejB, at 4,137,503 to 4,138,597 _RS19785 BWI76_RS19790: BWI76_RS19790 - putative binding-protein-dependent transporter, at 4,138,597 to 4,139,622 _RS19790 Position (kb) 4137 4138 4139Strain fitness (log2 ratio) -3 -2 -1 0 1at 4136.674 kb on - strand, within BWI76_RS19780at 4136.725 kb on - strand, within BWI76_RS19780at 4136.808 kb on - strand, within BWI76_RS19780at 4136.853 kb on - strand, within BWI76_RS19780at 4136.975 kb on + strand, within BWI76_RS19780at 4136.990 kb on - strand, within BWI76_RS19780at 4137.365 kb on + strandat 4137.522 kb on + strandat 4137.747 kb on + strand, within BWI76_RS19785at 4137.922 kb on - strand, within BWI76_RS19785at 4137.935 kb on + strand, within BWI76_RS19785at 4138.357 kb on - strand, within BWI76_RS19785at 4138.387 kb on - strand, within BWI76_RS19785at 4138.422 kb on - strand, within BWI76_RS19785at 4138.554 kb on + strandat 4138.562 kb on - strandat 4138.837 kb on - strand, within BWI76_RS19790at 4138.964 kb on - strand, within BWI76_RS19790at 4139.086 kb on + strand, within BWI76_RS19790at 4139.115 kb on + strand, within BWI76_RS19790at 4139.181 kb on + strand, within BWI76_RS19790at 4139.189 kb on - strand, within BWI76_RS19790at 4139.393 kb on + strand, within BWI76_RS19790

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Per-strain Table

Position Strand Gene LocusTag Fraction Taped volatile agar plate with Trichoderma atroviridae IMI
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4,136,674 - BWI76_RS19780 0.55 -2.1
4,136,725 - BWI76_RS19780 0.57 -2.1
4,136,808 - BWI76_RS19780 0.62 +0.3
4,136,853 - BWI76_RS19780 0.65 +0.5
4,136,975 + BWI76_RS19780 0.71 -1.4
4,136,990 - BWI76_RS19780 0.72 -1.0
4,137,365 + -0.2
4,137,522 + -0.7
4,137,747 + BWI76_RS19785 0.22 -2.0
4,137,922 - BWI76_RS19785 0.38 -2.4
4,137,935 + BWI76_RS19785 0.39 -1.3
4,138,357 - BWI76_RS19785 0.78 +0.3
4,138,387 - BWI76_RS19785 0.81 -2.9
4,138,422 - BWI76_RS19785 0.84 -0.5
4,138,554 + -0.4
4,138,562 - -1.0
4,138,837 - BWI76_RS19790 0.23 +0.2
4,138,964 - BWI76_RS19790 0.36 -1.3
4,139,086 + BWI76_RS19790 0.48 -2.1
4,139,115 + BWI76_RS19790 0.50 +0.1
4,139,181 + BWI76_RS19790 0.57 +1.6
4,139,189 - BWI76_RS19790 0.58 -0.6
4,139,393 + BWI76_RS19790 0.78 -2.5

Or see this region's nucleotide sequence