Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS15895

Experiment: Taped volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS15890 and BWI76_RS15895 are separated by 14 nucleotidesBWI76_RS15895 and BWI76_RS15900 are separated by 208 nucleotidesBWI76_RS15900 and BWI76_RS15905 are separated by 136 nucleotides BWI76_RS15890: BWI76_RS15890 - Zn-dependent oxidoreductase, at 3,297,174 to 3,298,190 _RS15890 BWI76_RS15895: BWI76_RS15895 - starvation-sensing protein RspA, at 3,298,205 to 3,299,419 _RS15895 BWI76_RS15900: BWI76_RS15900 - hypothetical protein, at 3,299,628 to 3,299,953 _RS15900 BWI76_RS15905: BWI76_RS15905 - hypothetical protein, at 3,300,090 to 3,300,431 _RS15905 Position (kb) 3298 3299 3300Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3297.235 kb on - strandat 3297.238 kb on + strandat 3297.248 kb on + strandat 3297.268 kb on + strandat 3297.319 kb on + strand, within BWI76_RS15890at 3297.371 kb on + strand, within BWI76_RS15890at 3297.400 kb on - strand, within BWI76_RS15890at 3297.597 kb on - strand, within BWI76_RS15890at 3297.619 kb on + strand, within BWI76_RS15890at 3297.637 kb on - strandat 3297.688 kb on + strand, within BWI76_RS15890at 3297.696 kb on - strand, within BWI76_RS15890at 3297.875 kb on + strand, within BWI76_RS15890at 3297.880 kb on + strand, within BWI76_RS15890at 3297.943 kb on + strand, within BWI76_RS15890at 3298.219 kb on - strandat 3298.386 kb on - strand, within BWI76_RS15895at 3298.552 kb on + strand, within BWI76_RS15895at 3298.728 kb on - strand, within BWI76_RS15895at 3298.917 kb on + strand, within BWI76_RS15895at 3299.171 kb on + strand, within BWI76_RS15895at 3299.265 kb on - strand, within BWI76_RS15895at 3299.275 kb on - strand, within BWI76_RS15895at 3299.327 kb on - strandat 3299.536 kb on - strandat 3299.569 kb on - strandat 3299.633 kb on - strandat 3299.744 kb on - strand, within BWI76_RS15900at 3299.781 kb on - strand, within BWI76_RS15900at 3300.394 kb on + strand, within BWI76_RS15905at 3300.402 kb on - strandat 3300.402 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Taped volatile agar plate with Trichoderma atroviridae IMI
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3,297,235 - +0.5
3,297,238 + +1.7
3,297,248 + -0.1
3,297,268 + +2.7
3,297,319 + BWI76_RS15890 0.14 -0.6
3,297,371 + BWI76_RS15890 0.19 -1.9
3,297,400 - BWI76_RS15890 0.22 -2.1
3,297,597 - BWI76_RS15890 0.42 -1.8
3,297,619 + BWI76_RS15890 0.44 -0.6
3,297,637 - -1.5
3,297,688 + BWI76_RS15890 0.51 -0.4
3,297,696 - BWI76_RS15890 0.51 -2.2
3,297,875 + BWI76_RS15890 0.69 -3.2
3,297,880 + BWI76_RS15890 0.69 +1.2
3,297,943 + BWI76_RS15890 0.76 +0.0
3,298,219 - -0.1
3,298,386 - BWI76_RS15895 0.15 +0.3
3,298,552 + BWI76_RS15895 0.29 +0.3
3,298,728 - BWI76_RS15895 0.43 +1.3
3,298,917 + BWI76_RS15895 0.59 -0.4
3,299,171 + BWI76_RS15895 0.80 -2.6
3,299,265 - BWI76_RS15895 0.87 +0.1
3,299,275 - BWI76_RS15895 0.88 +0.7
3,299,327 - -0.1
3,299,536 - +0.3
3,299,569 - -3.3
3,299,633 - -0.1
3,299,744 - BWI76_RS15900 0.36 -1.3
3,299,781 - BWI76_RS15900 0.47 +0.3
3,300,394 + BWI76_RS15905 0.89 +2.2
3,300,402 - -0.1
3,300,402 - +0.4

Or see this region's nucleotide sequence