Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS15885

Experiment: Taped volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS15870 and BWI76_RS15875 are separated by 95 nucleotidesBWI76_RS15875 and BWI76_RS15880 are separated by 26 nucleotidesBWI76_RS15880 and BWI76_RS15885 are separated by 36 nucleotidesBWI76_RS15885 and BWI76_RS15890 are separated by 177 nucleotides BWI76_RS15870: BWI76_RS15870 - hypothetical protein, at 3,294,329 to 3,295,048 _RS15870 BWI76_RS15875: BWI76_RS15875 - hypothetical protein, at 3,295,144 to 3,295,383 _RS15875 BWI76_RS15880: BWI76_RS15880 - DNA-binding protein, at 3,295,410 to 3,295,679 _RS15880 BWI76_RS15885: BWI76_RS15885 - putative phage integrase, at 3,295,716 to 3,296,996 _RS15885 BWI76_RS15890: BWI76_RS15890 - Zn-dependent oxidoreductase, at 3,297,174 to 3,298,190 _RS15890 Position (kb) 3295 3296 3297Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3295.027 kb on + strandat 3295.798 kb on - strandat 3295.912 kb on + strand, within BWI76_RS15885at 3295.928 kb on + strand, within BWI76_RS15885at 3295.949 kb on - strand, within BWI76_RS15885at 3296.151 kb on + strand, within BWI76_RS15885at 3296.153 kb on + strand, within BWI76_RS15885at 3296.176 kb on - strand, within BWI76_RS15885at 3296.305 kb on - strand, within BWI76_RS15885at 3296.433 kb on - strand, within BWI76_RS15885at 3296.434 kb on - strand, within BWI76_RS15885at 3296.445 kb on - strand, within BWI76_RS15885at 3296.596 kb on - strand, within BWI76_RS15885at 3296.677 kb on - strand, within BWI76_RS15885at 3296.682 kb on - strand, within BWI76_RS15885at 3296.701 kb on + strand, within BWI76_RS15885at 3296.708 kb on - strand, within BWI76_RS15885at 3296.722 kb on + strandat 3296.814 kb on + strand, within BWI76_RS15885at 3296.818 kb on + strandat 3296.934 kb on - strandat 3297.047 kb on + strandat 3297.047 kb on + strandat 3297.060 kb on - strandat 3297.065 kb on - strandat 3297.079 kb on - strandat 3297.145 kb on + strandat 3297.153 kb on - strandat 3297.157 kb on + strandat 3297.185 kb on - strandat 3297.202 kb on - strandat 3297.235 kb on - strandat 3297.238 kb on + strandat 3297.248 kb on + strandat 3297.268 kb on + strandat 3297.319 kb on + strand, within BWI76_RS15890at 3297.371 kb on + strand, within BWI76_RS15890at 3297.400 kb on - strand, within BWI76_RS15890at 3297.597 kb on - strand, within BWI76_RS15890at 3297.619 kb on + strand, within BWI76_RS15890at 3297.637 kb on - strandat 3297.688 kb on + strand, within BWI76_RS15890at 3297.696 kb on - strand, within BWI76_RS15890at 3297.875 kb on + strand, within BWI76_RS15890at 3297.880 kb on + strand, within BWI76_RS15890at 3297.943 kb on + strand, within BWI76_RS15890

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Per-strain Table

Position Strand Gene LocusTag Fraction Taped volatile agar plate with Trichoderma atroviridae IMI
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3,295,027 + +0.1
3,295,798 - +0.1
3,295,912 + BWI76_RS15885 0.15 -1.0
3,295,928 + BWI76_RS15885 0.17 +1.6
3,295,949 - BWI76_RS15885 0.18 +1.2
3,296,151 + BWI76_RS15885 0.34 -1.2
3,296,153 + BWI76_RS15885 0.34 +0.2
3,296,176 - BWI76_RS15885 0.36 +2.2
3,296,305 - BWI76_RS15885 0.46 -0.5
3,296,433 - BWI76_RS15885 0.56 -1.8
3,296,434 - BWI76_RS15885 0.56 +0.8
3,296,445 - BWI76_RS15885 0.57 -1.0
3,296,596 - BWI76_RS15885 0.69 +0.3
3,296,677 - BWI76_RS15885 0.75 -0.1
3,296,682 - BWI76_RS15885 0.75 -0.6
3,296,701 + BWI76_RS15885 0.77 -1.6
3,296,708 - BWI76_RS15885 0.77 -0.4
3,296,722 + -2.1
3,296,814 + BWI76_RS15885 0.86 -1.0
3,296,818 + +1.2
3,296,934 - -2.1
3,297,047 + +2.5
3,297,047 + -1.8
3,297,060 - +0.5
3,297,065 - +1.0
3,297,079 - -1.2
3,297,145 + -0.4
3,297,153 - +0.3
3,297,157 + -0.8
3,297,185 - -1.1
3,297,202 - +0.6
3,297,235 - +0.5
3,297,238 + +1.7
3,297,248 + -0.1
3,297,268 + +2.7
3,297,319 + BWI76_RS15890 0.14 -0.6
3,297,371 + BWI76_RS15890 0.19 -1.9
3,297,400 - BWI76_RS15890 0.22 -2.1
3,297,597 - BWI76_RS15890 0.42 -1.8
3,297,619 + BWI76_RS15890 0.44 -0.6
3,297,637 - -1.5
3,297,688 + BWI76_RS15890 0.51 -0.4
3,297,696 - BWI76_RS15890 0.51 -2.2
3,297,875 + BWI76_RS15890 0.69 -3.2
3,297,880 + BWI76_RS15890 0.69 +1.2
3,297,943 + BWI76_RS15890 0.76 +0.0

Or see this region's nucleotide sequence