Experiment: Taped volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS15830 and BWI76_RS15835 are separated by 7 nucleotides BWI76_RS15835 and BWI76_RS15840 are separated by 151 nucleotides BWI76_RS15840 and BWI76_RS15845 overlap by 17 nucleotides
BWI76_RS15830: BWI76_RS15830 - hypothetical protein, at 3,290,662 to 3,291,666
_RS15830
BWI76_RS15835: BWI76_RS15835 - hypothetical protein, at 3,291,674 to 3,291,871
_RS15835
BWI76_RS15840: BWI76_RS15840 - prophage protein, at 3,292,023 to 3,292,805
_RS15840
BWI76_RS15845: BWI76_RS15845 - hypothetical protein, at 3,292,789 to 3,293,079
_RS15845
Position (kb)
3291
3292 Strain fitness (log2 ratio)
-10
-9
-8
-7
-6
-5
-4
-3
-2
-1
0
1
2
3 at 3290.743 kb on + strand at 3290.827 kb on + strand, within BWI76_RS15830 at 3290.862 kb on - strand, within BWI76_RS15830 at 3290.869 kb on + strand, within BWI76_RS15830 at 3290.869 kb on + strand, within BWI76_RS15830 at 3290.877 kb on - strand, within BWI76_RS15830 at 3290.889 kb on + strand, within BWI76_RS15830 at 3291.006 kb on + strand, within BWI76_RS15830 at 3291.068 kb on - strand, within BWI76_RS15830 at 3291.241 kb on + strand, within BWI76_RS15830 at 3291.274 kb on - strand, within BWI76_RS15830 at 3291.377 kb on - strand, within BWI76_RS15830 at 3291.400 kb on + strand, within BWI76_RS15830 at 3291.535 kb on - strand, within BWI76_RS15830 at 3291.559 kb on - strand, within BWI76_RS15830 at 3291.559 kb on - strand, within BWI76_RS15830 at 3291.589 kb on - strand at 3291.708 kb on - strand, within BWI76_RS15835 at 3291.716 kb on - strand, within BWI76_RS15835 at 3291.801 kb on + strand, within BWI76_RS15835 at 3291.830 kb on + strand, within BWI76_RS15835 at 3292.119 kb on + strand, within BWI76_RS15840 at 3292.119 kb on + strand, within BWI76_RS15840 at 3292.126 kb on - strand, within BWI76_RS15840 at 3292.127 kb on - strand, within BWI76_RS15840 at 3292.295 kb on + strand, within BWI76_RS15840 at 3292.349 kb on + strand, within BWI76_RS15840 at 3292.349 kb on - strand, within BWI76_RS15840 at 3292.520 kb on + strand, within BWI76_RS15840 at 3292.520 kb on + strand, within BWI76_RS15840 at 3292.520 kb on + strand, within BWI76_RS15840 at 3292.528 kb on - strand, within BWI76_RS15840 at 3292.528 kb on - strand, within BWI76_RS15840 at 3292.674 kb on - strand, within BWI76_RS15840 at 3292.787 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Taped volatile agar plate with Trichoderma atroviridae IMI remove 3,290,743 + -1.7 3,290,827 + BWI76_RS15830 0.16 -10.1 3,290,862 - BWI76_RS15830 0.20 -1.2 3,290,869 + BWI76_RS15830 0.21 -8.7 3,290,869 + BWI76_RS15830 0.21 -7.3 3,290,877 - BWI76_RS15830 0.21 +0.1 3,290,889 + BWI76_RS15830 0.23 -7.5 3,291,006 + BWI76_RS15830 0.34 -4.1 3,291,068 - BWI76_RS15830 0.40 -0.0 3,291,241 + BWI76_RS15830 0.58 -8.9 3,291,274 - BWI76_RS15830 0.61 +0.6 3,291,377 - BWI76_RS15830 0.71 -3.3 3,291,400 + BWI76_RS15830 0.73 -4.4 3,291,535 - BWI76_RS15830 0.87 +0.6 3,291,559 - BWI76_RS15830 0.89 +0.9 3,291,559 - BWI76_RS15830 0.89 -1.3 3,291,589 - -2.2 3,291,708 - BWI76_RS15835 0.17 +0.4 3,291,716 - BWI76_RS15835 0.21 +3.4 3,291,801 + BWI76_RS15835 0.64 -4.6 3,291,830 + BWI76_RS15835 0.79 -6.1 3,292,119 + BWI76_RS15840 0.12 -9.4 3,292,119 + BWI76_RS15840 0.12 -3.3 3,292,126 - BWI76_RS15840 0.13 -1.6 3,292,127 - BWI76_RS15840 0.13 -0.6 3,292,295 + BWI76_RS15840 0.35 -7.6 3,292,349 + BWI76_RS15840 0.42 -0.2 3,292,349 - BWI76_RS15840 0.42 -0.8 3,292,520 + BWI76_RS15840 0.63 -5.8 3,292,520 + BWI76_RS15840 0.63 -1.1 3,292,520 + BWI76_RS15840 0.63 -2.6 3,292,528 - BWI76_RS15840 0.64 -3.8 3,292,528 - BWI76_RS15840 0.64 +0.2 3,292,674 - BWI76_RS15840 0.83 +0.1 3,292,787 - -0.3
Or see this region's nucleotide sequence