Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS15835

Experiment: Taped volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS15830 and BWI76_RS15835 are separated by 7 nucleotidesBWI76_RS15835 and BWI76_RS15840 are separated by 151 nucleotidesBWI76_RS15840 and BWI76_RS15845 overlap by 17 nucleotides BWI76_RS15830: BWI76_RS15830 - hypothetical protein, at 3,290,662 to 3,291,666 _RS15830 BWI76_RS15835: BWI76_RS15835 - hypothetical protein, at 3,291,674 to 3,291,871 _RS15835 BWI76_RS15840: BWI76_RS15840 - prophage protein, at 3,292,023 to 3,292,805 _RS15840 BWI76_RS15845: BWI76_RS15845 - hypothetical protein, at 3,292,789 to 3,293,079 _RS15845 Position (kb) 3291 3292Strain fitness (log2 ratio) -10 -9 -8 -7 -6 -5 -4 -3 -2 -1 0 1 2 3at 3290.743 kb on + strandat 3290.827 kb on + strand, within BWI76_RS15830at 3290.862 kb on - strand, within BWI76_RS15830at 3290.869 kb on + strand, within BWI76_RS15830at 3290.869 kb on + strand, within BWI76_RS15830at 3290.877 kb on - strand, within BWI76_RS15830at 3290.889 kb on + strand, within BWI76_RS15830at 3291.006 kb on + strand, within BWI76_RS15830at 3291.068 kb on - strand, within BWI76_RS15830at 3291.241 kb on + strand, within BWI76_RS15830at 3291.274 kb on - strand, within BWI76_RS15830at 3291.377 kb on - strand, within BWI76_RS15830at 3291.400 kb on + strand, within BWI76_RS15830at 3291.535 kb on - strand, within BWI76_RS15830at 3291.559 kb on - strand, within BWI76_RS15830at 3291.559 kb on - strand, within BWI76_RS15830at 3291.589 kb on - strandat 3291.708 kb on - strand, within BWI76_RS15835at 3291.716 kb on - strand, within BWI76_RS15835at 3291.801 kb on + strand, within BWI76_RS15835at 3291.830 kb on + strand, within BWI76_RS15835at 3292.119 kb on + strand, within BWI76_RS15840at 3292.119 kb on + strand, within BWI76_RS15840at 3292.126 kb on - strand, within BWI76_RS15840at 3292.127 kb on - strand, within BWI76_RS15840at 3292.295 kb on + strand, within BWI76_RS15840at 3292.349 kb on + strand, within BWI76_RS15840at 3292.349 kb on - strand, within BWI76_RS15840at 3292.520 kb on + strand, within BWI76_RS15840at 3292.520 kb on + strand, within BWI76_RS15840at 3292.520 kb on + strand, within BWI76_RS15840at 3292.528 kb on - strand, within BWI76_RS15840at 3292.528 kb on - strand, within BWI76_RS15840at 3292.674 kb on - strand, within BWI76_RS15840at 3292.787 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Taped volatile agar plate with Trichoderma atroviridae IMI
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3,290,743 + -1.7
3,290,827 + BWI76_RS15830 0.16 -10.1
3,290,862 - BWI76_RS15830 0.20 -1.2
3,290,869 + BWI76_RS15830 0.21 -8.7
3,290,869 + BWI76_RS15830 0.21 -7.3
3,290,877 - BWI76_RS15830 0.21 +0.1
3,290,889 + BWI76_RS15830 0.23 -7.5
3,291,006 + BWI76_RS15830 0.34 -4.1
3,291,068 - BWI76_RS15830 0.40 -0.0
3,291,241 + BWI76_RS15830 0.58 -8.9
3,291,274 - BWI76_RS15830 0.61 +0.6
3,291,377 - BWI76_RS15830 0.71 -3.3
3,291,400 + BWI76_RS15830 0.73 -4.4
3,291,535 - BWI76_RS15830 0.87 +0.6
3,291,559 - BWI76_RS15830 0.89 +0.9
3,291,559 - BWI76_RS15830 0.89 -1.3
3,291,589 - -2.2
3,291,708 - BWI76_RS15835 0.17 +0.4
3,291,716 - BWI76_RS15835 0.21 +3.4
3,291,801 + BWI76_RS15835 0.64 -4.6
3,291,830 + BWI76_RS15835 0.79 -6.1
3,292,119 + BWI76_RS15840 0.12 -9.4
3,292,119 + BWI76_RS15840 0.12 -3.3
3,292,126 - BWI76_RS15840 0.13 -1.6
3,292,127 - BWI76_RS15840 0.13 -0.6
3,292,295 + BWI76_RS15840 0.35 -7.6
3,292,349 + BWI76_RS15840 0.42 -0.2
3,292,349 - BWI76_RS15840 0.42 -0.8
3,292,520 + BWI76_RS15840 0.63 -5.8
3,292,520 + BWI76_RS15840 0.63 -1.1
3,292,520 + BWI76_RS15840 0.63 -2.6
3,292,528 - BWI76_RS15840 0.64 -3.8
3,292,528 - BWI76_RS15840 0.64 +0.2
3,292,674 - BWI76_RS15840 0.83 +0.1
3,292,787 - -0.3

Or see this region's nucleotide sequence