Experiment: Taped volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS15240 and BWI76_RS15245 are separated by 18 nucleotides BWI76_RS15245 and BWI76_RS15250 are separated by 111 nucleotides BWI76_RS15250 and BWI76_RS15255 are separated by 28 nucleotides
BWI76_RS15240: BWI76_RS15240 - alcohol dehydrogenase, at 3,194,208 to 3,195,353
_RS15240
BWI76_RS15245: BWI76_RS15245 - dihydrodipicolinate synthase family protein, at 3,195,372 to 3,196,256
_RS15245
BWI76_RS15250: BWI76_RS15250 - tellurium resistance protein TerC, at 3,196,368 to 3,197,129
_RS15250
BWI76_RS15255: BWI76_RS15255 - hypothetical protein, at 3,197,158 to 3,198,330
_RS15255
Position (kb)
3195
3196
3197 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3194.389 kb on - strand, within BWI76_RS15240 at 3194.419 kb on - strand, within BWI76_RS15240 at 3194.522 kb on - strand, within BWI76_RS15240 at 3194.658 kb on - strand, within BWI76_RS15240 at 3195.052 kb on + strand, within BWI76_RS15240 at 3195.225 kb on + strand, within BWI76_RS15240 at 3195.356 kb on - strand at 3195.623 kb on - strand, within BWI76_RS15245 at 3195.702 kb on - strand, within BWI76_RS15245 at 3195.736 kb on - strand, within BWI76_RS15245 at 3195.892 kb on - strand, within BWI76_RS15245 at 3195.930 kb on - strand, within BWI76_RS15245 at 3195.962 kb on + strand, within BWI76_RS15245 at 3196.052 kb on + strand, within BWI76_RS15245 at 3196.074 kb on - strand, within BWI76_RS15245 at 3196.077 kb on + strand, within BWI76_RS15245 at 3196.077 kb on + strand, within BWI76_RS15245 at 3196.077 kb on + strand, within BWI76_RS15245 at 3196.077 kb on + strand, within BWI76_RS15245 at 3196.077 kb on + strand, within BWI76_RS15245 at 3196.085 kb on - strand, within BWI76_RS15245 at 3196.088 kb on - strand, within BWI76_RS15245 at 3196.098 kb on - strand, within BWI76_RS15245 at 3196.173 kb on - strand at 3196.173 kb on - strand at 3196.186 kb on + strand at 3196.191 kb on + strand at 3196.194 kb on - strand at 3196.197 kb on + strand at 3196.198 kb on + strand at 3196.199 kb on - strand at 3196.204 kb on + strand at 3196.205 kb on - strand at 3196.205 kb on - strand at 3196.205 kb on - strand at 3196.212 kb on - strand at 3196.212 kb on - strand at 3196.212 kb on - strand at 3196.351 kb on + strand at 3196.533 kb on + strand, within BWI76_RS15250 at 3197.100 kb on + strand at 3197.199 kb on + strand at 3197.205 kb on + strand at 3197.213 kb on - strand at 3197.224 kb on + strand at 3197.232 kb on + strand at 3197.232 kb on + strand at 3197.237 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Taped volatile agar plate with Trichoderma atroviridae IMI remove 3,194,389 - BWI76_RS15240 0.16 +0.3 3,194,419 - BWI76_RS15240 0.18 -0.8 3,194,522 - BWI76_RS15240 0.27 -1.5 3,194,658 - BWI76_RS15240 0.39 +1.6 3,195,052 + BWI76_RS15240 0.74 +1.0 3,195,225 + BWI76_RS15240 0.89 -1.7 3,195,356 - +0.0 3,195,623 - BWI76_RS15245 0.28 +0.9 3,195,702 - BWI76_RS15245 0.37 +0.2 3,195,736 - BWI76_RS15245 0.41 -3.0 3,195,892 - BWI76_RS15245 0.59 +0.5 3,195,930 - BWI76_RS15245 0.63 -0.1 3,195,962 + BWI76_RS15245 0.67 -0.4 3,196,052 + BWI76_RS15245 0.77 -0.6 3,196,074 - BWI76_RS15245 0.79 -2.8 3,196,077 + BWI76_RS15245 0.80 -1.7 3,196,077 + BWI76_RS15245 0.80 -1.1 3,196,077 + BWI76_RS15245 0.80 -0.2 3,196,077 + BWI76_RS15245 0.80 -2.1 3,196,077 + BWI76_RS15245 0.80 +0.7 3,196,085 - BWI76_RS15245 0.81 -2.2 3,196,088 - BWI76_RS15245 0.81 +0.3 3,196,098 - BWI76_RS15245 0.82 -0.7 3,196,173 - -0.8 3,196,173 - -0.9 3,196,186 + -1.9 3,196,191 + -2.7 3,196,194 - -1.7 3,196,197 + -1.0 3,196,198 + -1.1 3,196,199 - -0.9 3,196,204 + -0.9 3,196,205 - +0.2 3,196,205 - -0.3 3,196,205 - -0.4 3,196,212 - -1.2 3,196,212 - -1.0 3,196,212 - -2.0 3,196,351 + +2.8 3,196,533 + BWI76_RS15250 0.22 -1.0 3,197,100 + +0.1 3,197,199 + -2.0 3,197,205 + -0.4 3,197,213 - +0.2 3,197,224 + -1.1 3,197,232 + +0.2 3,197,232 + +0.5 3,197,237 + -0.3
Or see this region's nucleotide sequence