Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS10260

Experiment: Taped volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS10250 and BWI76_RS10255 overlap by 17 nucleotidesBWI76_RS10255 and BWI76_RS10260 are separated by 10 nucleotidesBWI76_RS10260 and BWI76_RS10265 overlap by 14 nucleotides BWI76_RS10250: BWI76_RS10250 - glutamine amidotransferase, at 2,170,877 to 2,171,974 _RS10250 BWI76_RS10255: BWI76_RS10255 - dihydrodipicolinate synthase family protein, at 2,171,958 to 2,172,881 _RS10255 BWI76_RS10260: BWI76_RS10260 - creatinase, at 2,172,892 to 2,174,061 _RS10260 BWI76_RS10265: BWI76_RS10265 - mandelate racemase/muconate lactonizing protein, at 2,174,048 to 2,175,148 _RS10265 Position (kb) 2172 2173 2174 2175Strain fitness (log2 ratio) -2 -1 0 1 2at 2171.900 kb on - strandat 2172.023 kb on - strandat 2172.023 kb on - strandat 2172.023 kb on - strandat 2172.668 kb on - strand, within BWI76_RS10255at 2172.750 kb on + strand, within BWI76_RS10255at 2172.750 kb on + strand, within BWI76_RS10255at 2173.688 kb on + strand, within BWI76_RS10260at 2173.696 kb on - strand, within BWI76_RS10260at 2173.966 kb on + strandat 2173.974 kb on - strandat 2173.974 kb on - strandat 2174.069 kb on - strandat 2174.399 kb on + strand, within BWI76_RS10265at 2174.485 kb on - strand, within BWI76_RS10265at 2174.485 kb on - strand, within BWI76_RS10265at 2174.799 kb on - strand, within BWI76_RS10265at 2174.854 kb on - strand, within BWI76_RS10265at 2174.904 kb on - strand, within BWI76_RS10265

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Per-strain Table

Position Strand Gene LocusTag Fraction Taped volatile agar plate with Trichoderma atroviridae IMI
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2,171,900 - +1.3
2,172,023 - +1.1
2,172,023 - +0.3
2,172,023 - +1.1
2,172,668 - BWI76_RS10255 0.77 +1.3
2,172,750 + BWI76_RS10255 0.86 +0.1
2,172,750 + BWI76_RS10255 0.86 +0.7
2,173,688 + BWI76_RS10260 0.68 -1.9
2,173,696 - BWI76_RS10260 0.69 +0.4
2,173,966 + -0.2
2,173,974 - +2.4
2,173,974 - +0.6
2,174,069 - +1.6
2,174,399 + BWI76_RS10265 0.32 -0.6
2,174,485 - BWI76_RS10265 0.40 -1.0
2,174,485 - BWI76_RS10265 0.40 +0.4
2,174,799 - BWI76_RS10265 0.68 -0.5
2,174,854 - BWI76_RS10265 0.73 +1.0
2,174,904 - BWI76_RS10265 0.78 +0.2

Or see this region's nucleotide sequence