Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06530

Experiment: Taped volatile agar plate with Trichoderma atroviridae IMI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS06525 and BWI76_RS06530 are separated by 132 nucleotidesBWI76_RS06530 and BWI76_RS06535 are separated by 183 nucleotides BWI76_RS06525: BWI76_RS06525 - ATP-dependent Clp protease proteolytic subunit, at 1,370,487 to 1,371,110 _RS06525 BWI76_RS06530: BWI76_RS06530 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 1,371,243 to 1,372,517 _RS06530 BWI76_RS06535: BWI76_RS06535 - endopeptidase La, at 1,372,701 to 1,375,055 _RS06535 Position (kb) 1371 1372 1373Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4 5at 1370.369 kb on + strandat 1370.379 kb on - strandat 1370.397 kb on - strandat 1370.402 kb on - strandat 1370.523 kb on + strandat 1370.651 kb on + strand, within BWI76_RS06525at 1370.854 kb on - strand, within BWI76_RS06525at 1370.987 kb on - strand, within BWI76_RS06525at 1371.000 kb on + strand, within BWI76_RS06525at 1371.007 kb on + strand, within BWI76_RS06525at 1371.232 kb on + strandat 1371.276 kb on + strandat 1371.435 kb on - strand, within BWI76_RS06530at 1371.570 kb on - strand, within BWI76_RS06530at 1371.705 kb on + strand, within BWI76_RS06530at 1371.748 kb on - strand, within BWI76_RS06530at 1372.140 kb on - strand, within BWI76_RS06530at 1372.382 kb on + strand, within BWI76_RS06530at 1372.590 kb on + strandat 1372.827 kb on + strandat 1372.968 kb on + strand, within BWI76_RS06535at 1373.007 kb on - strand, within BWI76_RS06535at 1373.007 kb on - strand, within BWI76_RS06535

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Taped volatile agar plate with Trichoderma atroviridae IMI
remove
1,370,369 + -0.7
1,370,379 - -0.6
1,370,397 - -1.3
1,370,402 - -1.5
1,370,523 + +5.4
1,370,651 + BWI76_RS06525 0.26 +4.3
1,370,854 - BWI76_RS06525 0.59 +5.1
1,370,987 - BWI76_RS06525 0.80 +3.8
1,371,000 + BWI76_RS06525 0.82 +3.3
1,371,007 + BWI76_RS06525 0.83 +5.2
1,371,232 + +4.8
1,371,276 + +2.8
1,371,435 - BWI76_RS06530 0.15 +2.9
1,371,570 - BWI76_RS06530 0.26 +3.8
1,371,705 + BWI76_RS06530 0.36 +3.6
1,371,748 - BWI76_RS06530 0.40 +4.5
1,372,140 - BWI76_RS06530 0.70 +2.3
1,372,382 + BWI76_RS06530 0.89 +3.2
1,372,590 + +0.2
1,372,827 + -3.2
1,372,968 + BWI76_RS06535 0.11 -5.5
1,373,007 - BWI76_RS06535 0.13 -2.7
1,373,007 - BWI76_RS06535 0.13 -2.8

Or see this region's nucleotide sequence