Experiment: Taped volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS05705 and BWI76_RS05710 are separated by 88 nucleotides BWI76_RS05710 and BWI76_RS05715 are separated by 68 nucleotides BWI76_RS05715 and BWI76_RS05720 overlap by 4 nucleotides
BWI76_RS05705: BWI76_RS05705 - transporter, at 1,199,394 to 1,199,666
_RS05705
BWI76_RS05710: BWI76_RS05710 - TetR family transcriptional regulator, at 1,199,755 to 1,200,375
_RS05710
BWI76_RS05715: BWI76_RS05715 - RND family efflux transporter MFP subunit, at 1,200,444 to 1,201,553
_RS05715
BWI76_RS05720: BWI76_RS05720 - cation/multidrug efflux pump, at 1,201,550 to 1,204,639
_RS05720
Position (kb)
1200
1201
1202 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1199.642 kb on + strand at 1199.662 kb on + strand at 1199.873 kb on + strand, within BWI76_RS05710 at 1200.078 kb on + strand, within BWI76_RS05710 at 1200.170 kb on + strand, within BWI76_RS05710 at 1200.178 kb on - strand, within BWI76_RS05710 at 1200.270 kb on + strand, within BWI76_RS05710 at 1200.336 kb on + strand at 1200.474 kb on - strand at 1200.679 kb on - strand, within BWI76_RS05715 at 1200.866 kb on + strand, within BWI76_RS05715 at 1200.944 kb on + strand, within BWI76_RS05715 at 1200.944 kb on + strand, within BWI76_RS05715 at 1201.006 kb on + strand, within BWI76_RS05715 at 1201.021 kb on - strand, within BWI76_RS05715 at 1201.220 kb on + strand, within BWI76_RS05715 at 1201.401 kb on - strand, within BWI76_RS05715 at 1201.482 kb on - strand at 1201.515 kb on + strand at 1201.523 kb on - strand at 1201.627 kb on - strand at 1201.686 kb on + strand at 1201.808 kb on + strand at 1201.816 kb on - strand at 1201.828 kb on + strand at 1201.828 kb on + strand at 1201.828 kb on + strand at 1201.829 kb on + strand at 1201.836 kb on - strand at 1201.881 kb on - strand, within BWI76_RS05720 at 1201.893 kb on - strand, within BWI76_RS05720 at 1202.227 kb on + strand, within BWI76_RS05720 at 1202.353 kb on + strand, within BWI76_RS05720 at 1202.450 kb on - strand, within BWI76_RS05720 at 1202.518 kb on - strand, within BWI76_RS05720
Per-strain Table
Position Strand Gene LocusTag Fraction Taped volatile agar plate with Trichoderma atroviridae IMI remove 1,199,642 + -0.2 1,199,662 + +1.3 1,199,873 + BWI76_RS05710 0.19 +0.5 1,200,078 + BWI76_RS05710 0.52 -0.1 1,200,170 + BWI76_RS05710 0.67 +0.4 1,200,178 - BWI76_RS05710 0.68 -0.6 1,200,270 + BWI76_RS05710 0.83 -3.4 1,200,336 + -1.2 1,200,474 - -0.2 1,200,679 - BWI76_RS05715 0.21 +1.3 1,200,866 + BWI76_RS05715 0.38 +1.5 1,200,944 + BWI76_RS05715 0.45 +0.2 1,200,944 + BWI76_RS05715 0.45 +0.6 1,201,006 + BWI76_RS05715 0.51 +2.0 1,201,021 - BWI76_RS05715 0.52 +0.4 1,201,220 + BWI76_RS05715 0.70 +0.7 1,201,401 - BWI76_RS05715 0.86 -2.0 1,201,482 - +0.8 1,201,515 + -0.7 1,201,523 - +1.2 1,201,627 - +1.5 1,201,686 + -1.7 1,201,808 + -1.6 1,201,816 - +0.9 1,201,828 + -0.3 1,201,828 + -0.3 1,201,828 + +1.0 1,201,829 + -3.2 1,201,836 - -0.2 1,201,881 - BWI76_RS05720 0.11 -0.2 1,201,893 - BWI76_RS05720 0.11 +0.4 1,202,227 + BWI76_RS05720 0.22 +0.1 1,202,353 + BWI76_RS05720 0.26 -0.2 1,202,450 - BWI76_RS05720 0.29 +0.5 1,202,518 - BWI76_RS05720 0.31 -0.2
Or see this region's nucleotide sequence