Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS05715

Experiment: Taped volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS05705 and BWI76_RS05710 are separated by 88 nucleotidesBWI76_RS05710 and BWI76_RS05715 are separated by 68 nucleotidesBWI76_RS05715 and BWI76_RS05720 overlap by 4 nucleotides BWI76_RS05705: BWI76_RS05705 - transporter, at 1,199,394 to 1,199,666 _RS05705 BWI76_RS05710: BWI76_RS05710 - TetR family transcriptional regulator, at 1,199,755 to 1,200,375 _RS05710 BWI76_RS05715: BWI76_RS05715 - RND family efflux transporter MFP subunit, at 1,200,444 to 1,201,553 _RS05715 BWI76_RS05720: BWI76_RS05720 - cation/multidrug efflux pump, at 1,201,550 to 1,204,639 _RS05720 Position (kb) 1200 1201 1202Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1199.642 kb on + strandat 1199.662 kb on + strandat 1199.873 kb on + strand, within BWI76_RS05710at 1200.078 kb on + strand, within BWI76_RS05710at 1200.170 kb on + strand, within BWI76_RS05710at 1200.178 kb on - strand, within BWI76_RS05710at 1200.270 kb on + strand, within BWI76_RS05710at 1200.336 kb on + strandat 1200.474 kb on - strandat 1200.679 kb on - strand, within BWI76_RS05715at 1200.866 kb on + strand, within BWI76_RS05715at 1200.944 kb on + strand, within BWI76_RS05715at 1200.944 kb on + strand, within BWI76_RS05715at 1201.006 kb on + strand, within BWI76_RS05715at 1201.021 kb on - strand, within BWI76_RS05715at 1201.220 kb on + strand, within BWI76_RS05715at 1201.401 kb on - strand, within BWI76_RS05715at 1201.482 kb on - strandat 1201.515 kb on + strandat 1201.523 kb on - strandat 1201.627 kb on - strandat 1201.686 kb on + strandat 1201.808 kb on + strandat 1201.816 kb on - strandat 1201.828 kb on + strandat 1201.828 kb on + strandat 1201.828 kb on + strandat 1201.829 kb on + strandat 1201.836 kb on - strandat 1201.881 kb on - strand, within BWI76_RS05720at 1201.893 kb on - strand, within BWI76_RS05720at 1202.227 kb on + strand, within BWI76_RS05720at 1202.353 kb on + strand, within BWI76_RS05720at 1202.450 kb on - strand, within BWI76_RS05720at 1202.518 kb on - strand, within BWI76_RS05720

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Per-strain Table

Position Strand Gene LocusTag Fraction Taped volatile agar plate with Trichoderma atroviridae IMI
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1,199,642 + -0.2
1,199,662 + +1.3
1,199,873 + BWI76_RS05710 0.19 +0.5
1,200,078 + BWI76_RS05710 0.52 -0.1
1,200,170 + BWI76_RS05710 0.67 +0.4
1,200,178 - BWI76_RS05710 0.68 -0.6
1,200,270 + BWI76_RS05710 0.83 -3.4
1,200,336 + -1.2
1,200,474 - -0.2
1,200,679 - BWI76_RS05715 0.21 +1.3
1,200,866 + BWI76_RS05715 0.38 +1.5
1,200,944 + BWI76_RS05715 0.45 +0.2
1,200,944 + BWI76_RS05715 0.45 +0.6
1,201,006 + BWI76_RS05715 0.51 +2.0
1,201,021 - BWI76_RS05715 0.52 +0.4
1,201,220 + BWI76_RS05715 0.70 +0.7
1,201,401 - BWI76_RS05715 0.86 -2.0
1,201,482 - +0.8
1,201,515 + -0.7
1,201,523 - +1.2
1,201,627 - +1.5
1,201,686 + -1.7
1,201,808 + -1.6
1,201,816 - +0.9
1,201,828 + -0.3
1,201,828 + -0.3
1,201,828 + +1.0
1,201,829 + -3.2
1,201,836 - -0.2
1,201,881 - BWI76_RS05720 0.11 -0.2
1,201,893 - BWI76_RS05720 0.11 +0.4
1,202,227 + BWI76_RS05720 0.22 +0.1
1,202,353 + BWI76_RS05720 0.26 -0.2
1,202,450 - BWI76_RS05720 0.29 +0.5
1,202,518 - BWI76_RS05720 0.31 -0.2

Or see this region's nucleotide sequence