Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS26380

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS26375 and BWI76_RS26380 are separated by 117 nucleotidesBWI76_RS26380 and BWI76_RS26385 are separated by 31 nucleotides BWI76_RS26375: BWI76_RS26375 - aspartate aminotransferase family protein, at 5,459,277 to 5,460,542 _RS26375 BWI76_RS26380: BWI76_RS26380 - decarboxylase, at 5,460,660 to 5,462,174 _RS26380 BWI76_RS26385: BWI76_RS26385 - RNA polymerase sigma factor RpoH, at 5,462,206 to 5,463,060 _RS26385 Position (kb) 5460 5461 5462 5463Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5459.669 kb on - strand, within BWI76_RS26375at 5459.786 kb on - strand, within BWI76_RS26375at 5459.788 kb on + strand, within BWI76_RS26375at 5459.835 kb on + strand, within BWI76_RS26375at 5460.070 kb on + strandat 5460.104 kb on + strand, within BWI76_RS26375at 5460.111 kb on + strand, within BWI76_RS26375at 5460.177 kb on - strand, within BWI76_RS26375at 5460.338 kb on - strand, within BWI76_RS26375at 5460.390 kb on - strand, within BWI76_RS26375at 5460.428 kb on + strandat 5460.451 kb on - strandat 5460.493 kb on - strandat 5460.527 kb on + strandat 5460.766 kb on + strandat 5460.954 kb on + strand, within BWI76_RS26380at 5461.234 kb on - strand, within BWI76_RS26380at 5461.245 kb on - strand, within BWI76_RS26380at 5461.283 kb on - strand, within BWI76_RS26380at 5461.500 kb on - strand, within BWI76_RS26380at 5461.615 kb on - strand, within BWI76_RS26380at 5461.639 kb on - strand, within BWI76_RS26380at 5461.687 kb on - strand, within BWI76_RS26380at 5461.819 kb on + strand, within BWI76_RS26380at 5462.048 kb on + strandat 5462.128 kb on + strandat 5462.212 kb on - strandat 5463.135 kb on - strandat 5463.164 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
remove
5,459,669 - BWI76_RS26375 0.31 -1.6
5,459,786 - BWI76_RS26375 0.40 -0.3
5,459,788 + BWI76_RS26375 0.40 +0.8
5,459,835 + BWI76_RS26375 0.44 +1.8
5,460,070 + +1.9
5,460,104 + BWI76_RS26375 0.65 -2.0
5,460,111 + BWI76_RS26375 0.66 -1.0
5,460,177 - BWI76_RS26375 0.71 -3.1
5,460,338 - BWI76_RS26375 0.84 +0.6
5,460,390 - BWI76_RS26375 0.88 +0.3
5,460,428 + +1.5
5,460,451 - -0.4
5,460,493 - +0.6
5,460,527 + +1.6
5,460,766 + -0.7
5,460,954 + BWI76_RS26380 0.19 -0.4
5,461,234 - BWI76_RS26380 0.38 +0.9
5,461,245 - BWI76_RS26380 0.39 -3.8
5,461,283 - BWI76_RS26380 0.41 +0.2
5,461,500 - BWI76_RS26380 0.55 -0.9
5,461,615 - BWI76_RS26380 0.63 -4.0
5,461,639 - BWI76_RS26380 0.65 -0.7
5,461,687 - BWI76_RS26380 0.68 -2.8
5,461,819 + BWI76_RS26380 0.77 -0.0
5,462,048 + -1.2
5,462,128 + +0.7
5,462,212 - +2.3
5,463,135 - -1.2
5,463,164 - +0.1

Or see this region's nucleotide sequence