Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS26220

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS26215 and BWI76_RS26220 are separated by 247 nucleotidesBWI76_RS26220 and BWI76_RS26225 are separated by 358 nucleotides BWI76_RS26215: BWI76_RS26215 - glycogen-branching enzyme, at 5,424,237 to 5,426,423 _RS26215 BWI76_RS26220: BWI76_RS26220 - aspartate-semialdehyde dehydrogenase, at 5,426,671 to 5,427,777 _RS26220 BWI76_RS26225: BWI76_RS26225 - DNA processing protein DprA, at 5,428,136 to 5,429,341 _RS26225 Position (kb) 5426 5427 5428Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5425.943 kb on + strand, within BWI76_RS26215at 5426.125 kb on - strand, within BWI76_RS26215at 5426.334 kb on + strandat 5426.413 kb on + strandat 5426.489 kb on - strandat 5426.501 kb on - strandat 5426.513 kb on - strandat 5426.535 kb on - strandat 5426.572 kb on + strandat 5427.801 kb on - strandat 5427.826 kb on - strandat 5427.836 kb on - strandat 5428.144 kb on + strandat 5428.152 kb on - strandat 5428.152 kb on - strandat 5428.184 kb on + strandat 5428.200 kb on - strandat 5428.206 kb on + strandat 5428.206 kb on + strandat 5428.206 kb on + strandat 5428.206 kb on + strandat 5428.206 kb on + strandat 5428.206 kb on + strandat 5428.206 kb on + strandat 5428.206 kb on + strandat 5428.214 kb on - strandat 5428.214 kb on - strandat 5428.214 kb on - strandat 5428.214 kb on - strandat 5428.214 kb on - strandat 5428.214 kb on - strandat 5428.228 kb on + strandat 5428.228 kb on + strandat 5428.228 kb on + strandat 5428.228 kb on + strandat 5428.228 kb on + strandat 5428.228 kb on + strandat 5428.236 kb on - strandat 5428.388 kb on + strand, within BWI76_RS26225at 5428.407 kb on + strand, within BWI76_RS26225at 5428.530 kb on - strand, within BWI76_RS26225at 5428.569 kb on - strand, within BWI76_RS26225at 5428.714 kb on - strand, within BWI76_RS26225

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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5,425,943 + BWI76_RS26215 0.78 -2.8
5,426,125 - BWI76_RS26215 0.86 -0.1
5,426,334 + +0.7
5,426,413 + +1.2
5,426,489 - +2.3
5,426,501 - +1.0
5,426,513 - -0.3
5,426,535 - -0.9
5,426,572 + +1.2
5,427,801 - -0.5
5,427,826 - -0.7
5,427,836 - +1.4
5,428,144 + -0.2
5,428,152 - -3.1
5,428,152 - -0.5
5,428,184 + -2.2
5,428,200 - +1.7
5,428,206 + -3.1
5,428,206 + -0.5
5,428,206 + -0.3
5,428,206 + -2.7
5,428,206 + -2.0
5,428,206 + +0.4
5,428,206 + +1.4
5,428,206 + +2.2
5,428,214 - -2.1
5,428,214 - +0.1
5,428,214 - -0.7
5,428,214 - +2.4
5,428,214 - +1.0
5,428,214 - -0.2
5,428,228 + +1.9
5,428,228 + +0.1
5,428,228 + +0.1
5,428,228 + +3.1
5,428,228 + +0.2
5,428,228 + -3.4
5,428,236 - -0.7
5,428,388 + BWI76_RS26225 0.21 -2.5
5,428,407 + BWI76_RS26225 0.22 +1.3
5,428,530 - BWI76_RS26225 0.33 -0.1
5,428,569 - BWI76_RS26225 0.36 +0.3
5,428,714 - BWI76_RS26225 0.48 -0.8

Or see this region's nucleotide sequence