Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13715 and BWI76_RS13720 are separated by 9 nucleotides BWI76_RS13720 and BWI76_RS13725 overlap by 4 nucleotides BWI76_RS13725 and BWI76_RS13730 overlap by 59 nucleotides
BWI76_RS13715: BWI76_RS13715 - 2-chlorobenzoate 1 2-dioxygenase electron transfer subunit, at 2,861,436 to 2,862,452
_RS13715
BWI76_RS13720: BWI76_RS13720 - 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase, at 2,862,462 to 2,863,235
_RS13720
BWI76_RS13725: BWI76_RS13725 - aromatic amino acid exporter, at 2,863,232 to 2,864,110
_RS13725
BWI76_RS13730: BWI76_RS13730 - hypothetical protein, at 2,864,052 to 2,864,235
_RS13730
Position (kb)
2862
2863
2864 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 2861.740 kb on - strand, within BWI76_RS13715 at 2861.740 kb on - strand, within BWI76_RS13715 at 2861.740 kb on - strand, within BWI76_RS13715 at 2861.815 kb on - strand, within BWI76_RS13715 at 2861.902 kb on + strand, within BWI76_RS13715 at 2862.617 kb on - strand, within BWI76_RS13720 at 2862.897 kb on + strand, within BWI76_RS13720 at 2862.897 kb on + strand, within BWI76_RS13720 at 2862.949 kb on + strand at 2863.137 kb on - strand, within BWI76_RS13720 at 2863.254 kb on - strand at 2863.258 kb on + strand at 2863.322 kb on - strand, within BWI76_RS13725 at 2863.322 kb on - strand, within BWI76_RS13725 at 2863.424 kb on + strand, within BWI76_RS13725 at 2863.437 kb on + strand, within BWI76_RS13725 at 2863.475 kb on + strand, within BWI76_RS13725 at 2863.475 kb on + strand, within BWI76_RS13725 at 2863.483 kb on - strand, within BWI76_RS13725 at 2863.483 kb on - strand, within BWI76_RS13725 at 2863.483 kb on - strand, within BWI76_RS13725 at 2863.522 kb on + strand, within BWI76_RS13725 at 2863.523 kb on + strand, within BWI76_RS13725 at 2863.530 kb on - strand at 2863.535 kb on + strand, within BWI76_RS13725 at 2863.549 kb on + strand, within BWI76_RS13725 at 2863.590 kb on + strand, within BWI76_RS13725 at 2863.677 kb on + strand, within BWI76_RS13725 at 2863.702 kb on + strand, within BWI76_RS13725 at 2863.797 kb on + strand, within BWI76_RS13725 at 2863.826 kb on + strand, within BWI76_RS13725 at 2863.830 kb on + strand, within BWI76_RS13725 at 2863.836 kb on - strand, within BWI76_RS13725 at 2863.840 kb on + strand, within BWI76_RS13725 at 2863.840 kb on + strand, within BWI76_RS13725 at 2863.852 kb on + strand, within BWI76_RS13725 at 2863.855 kb on - strand, within BWI76_RS13725 at 2863.883 kb on - strand, within BWI76_RS13725 at 2863.959 kb on + strand, within BWI76_RS13725 at 2863.991 kb on + strand, within BWI76_RS13725 at 2863.994 kb on - strand, within BWI76_RS13725 at 2864.012 kb on - strand, within BWI76_RS13725 at 2864.020 kb on + strand, within BWI76_RS13725 at 2864.034 kb on + strand at 2864.063 kb on + strand at 2864.063 kb on + strand at 2864.065 kb on + strand at 2864.065 kb on + strand at 2864.071 kb on - strand at 2864.071 kb on - strand at 2864.071 kb on - strand at 2864.071 kb on - strand at 2864.073 kb on - strand at 2864.087 kb on - strand at 2864.190 kb on + strand, within BWI76_RS13730 at 2864.198 kb on - strand, within BWI76_RS13730
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 2,861,740 - BWI76_RS13715 0.30 +2.0 2,861,740 - BWI76_RS13715 0.30 -0.2 2,861,740 - BWI76_RS13715 0.30 +0.4 2,861,815 - BWI76_RS13715 0.37 +2.0 2,861,902 + BWI76_RS13715 0.46 +1.5 2,862,617 - BWI76_RS13720 0.20 -0.7 2,862,897 + BWI76_RS13720 0.56 +1.2 2,862,897 + BWI76_RS13720 0.56 +0.5 2,862,949 + +5.0 2,863,137 - BWI76_RS13720 0.87 +0.5 2,863,254 - -0.7 2,863,258 + +1.4 2,863,322 - BWI76_RS13725 0.10 -0.9 2,863,322 - BWI76_RS13725 0.10 +0.0 2,863,424 + BWI76_RS13725 0.22 +0.3 2,863,437 + BWI76_RS13725 0.23 -0.9 2,863,475 + BWI76_RS13725 0.28 -0.1 2,863,475 + BWI76_RS13725 0.28 -2.0 2,863,483 - BWI76_RS13725 0.29 +0.7 2,863,483 - BWI76_RS13725 0.29 +0.6 2,863,483 - BWI76_RS13725 0.29 -0.6 2,863,522 + BWI76_RS13725 0.33 +1.4 2,863,523 + BWI76_RS13725 0.33 -1.0 2,863,530 - +4.9 2,863,535 + BWI76_RS13725 0.34 -0.2 2,863,549 + BWI76_RS13725 0.36 +0.8 2,863,590 + BWI76_RS13725 0.41 +0.1 2,863,677 + BWI76_RS13725 0.51 +2.1 2,863,702 + BWI76_RS13725 0.53 +1.7 2,863,797 + BWI76_RS13725 0.64 -0.1 2,863,826 + BWI76_RS13725 0.68 +0.1 2,863,830 + BWI76_RS13725 0.68 -0.2 2,863,836 - BWI76_RS13725 0.69 -1.2 2,863,840 + BWI76_RS13725 0.69 -2.0 2,863,840 + BWI76_RS13725 0.69 +0.3 2,863,852 + BWI76_RS13725 0.71 +1.1 2,863,855 - BWI76_RS13725 0.71 -0.9 2,863,883 - BWI76_RS13725 0.74 +0.9 2,863,959 + BWI76_RS13725 0.83 +0.6 2,863,991 + BWI76_RS13725 0.86 -0.5 2,863,994 - BWI76_RS13725 0.87 +1.0 2,864,012 - BWI76_RS13725 0.89 +0.9 2,864,020 + BWI76_RS13725 0.90 +0.1 2,864,034 + +0.2 2,864,063 + +1.1 2,864,063 + -0.9 2,864,065 + +0.7 2,864,065 + +0.1 2,864,071 - +0.2 2,864,071 - +0.6 2,864,071 - +0.1 2,864,071 - +0.6 2,864,073 - +1.1 2,864,087 - +0.6 2,864,190 + BWI76_RS13730 0.75 +2.1 2,864,198 - BWI76_RS13730 0.79 -2.0
Or see this region's nucleotide sequence