Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07170 and BWI76_RS07175 are separated by 36 nucleotides BWI76_RS07175 and BWI76_RS07180 are separated by 353 nucleotides
BWI76_RS07170: BWI76_RS07170 - LysR family transcriptional regulator, at 1,506,179 to 1,507,054
_RS07170
BWI76_RS07175: BWI76_RS07175 - GNAT family acetyltransferase, at 1,507,091 to 1,507,957
_RS07175
BWI76_RS07180: BWI76_RS07180 - transcriptional regulator CadC, at 1,508,311 to 1,509,843
_RS07180
Position (kb)
1507
1508 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1506.224 kb on - strand at 1506.570 kb on + strand, within BWI76_RS07170 at 1506.685 kb on + strand, within BWI76_RS07170 at 1506.786 kb on - strand at 1506.791 kb on - strand, within BWI76_RS07170 at 1506.831 kb on - strand, within BWI76_RS07170 at 1506.845 kb on - strand, within BWI76_RS07170 at 1506.866 kb on - strand, within BWI76_RS07170 at 1506.945 kb on + strand, within BWI76_RS07170 at 1507.002 kb on - strand at 1507.069 kb on - strand at 1507.088 kb on + strand at 1507.100 kb on + strand at 1507.102 kb on - strand at 1507.115 kb on + strand at 1507.122 kb on - strand at 1507.190 kb on + strand, within BWI76_RS07175 at 1507.197 kb on - strand, within BWI76_RS07175 at 1507.231 kb on - strand, within BWI76_RS07175 at 1507.231 kb on - strand, within BWI76_RS07175 at 1507.233 kb on + strand, within BWI76_RS07175 at 1507.269 kb on - strand, within BWI76_RS07175 at 1507.313 kb on + strand, within BWI76_RS07175 at 1507.318 kb on + strand, within BWI76_RS07175 at 1507.387 kb on - strand, within BWI76_RS07175 at 1507.408 kb on - strand, within BWI76_RS07175 at 1507.408 kb on - strand, within BWI76_RS07175 at 1507.480 kb on + strand, within BWI76_RS07175 at 1507.558 kb on + strand, within BWI76_RS07175 at 1507.569 kb on - strand, within BWI76_RS07175 at 1507.602 kb on + strand, within BWI76_RS07175 at 1507.610 kb on - strand, within BWI76_RS07175 at 1507.643 kb on - strand, within BWI76_RS07175 at 1507.816 kb on - strand, within BWI76_RS07175 at 1507.822 kb on + strand, within BWI76_RS07175 at 1507.830 kb on - strand, within BWI76_RS07175 at 1507.844 kb on - strand, within BWI76_RS07175 at 1507.853 kb on + strand, within BWI76_RS07175 at 1507.859 kb on + strand, within BWI76_RS07175 at 1507.869 kb on - strand, within BWI76_RS07175 at 1507.894 kb on + strand at 1507.930 kb on + strand at 1507.991 kb on + strand at 1507.991 kb on + strand at 1507.999 kb on - strand at 1508.022 kb on - strand at 1508.030 kb on - strand at 1508.030 kb on - strand at 1508.048 kb on + strand at 1508.081 kb on + strand at 1508.082 kb on - strand at 1508.082 kb on - strand at 1508.084 kb on - strand at 1508.089 kb on - strand at 1508.089 kb on - strand at 1508.089 kb on - strand at 1508.089 kb on - strand at 1508.092 kb on - strand at 1508.129 kb on + strand at 1508.131 kb on - strand at 1508.137 kb on - strand at 1508.266 kb on - strand at 1508.320 kb on + strand at 1508.393 kb on + strand at 1508.403 kb on + strand at 1508.955 kb on + strand, within BWI76_RS07180
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 1,506,224 - -0.2 1,506,570 + BWI76_RS07170 0.45 +0.9 1,506,685 + BWI76_RS07170 0.58 -0.1 1,506,786 - +2.0 1,506,791 - BWI76_RS07170 0.70 -0.1 1,506,831 - BWI76_RS07170 0.74 +0.6 1,506,845 - BWI76_RS07170 0.76 -0.2 1,506,866 - BWI76_RS07170 0.78 -0.6 1,506,945 + BWI76_RS07170 0.87 -0.5 1,507,002 - +0.9 1,507,069 - -3.8 1,507,088 + -1.5 1,507,100 + +0.7 1,507,102 - -1.0 1,507,115 + -1.1 1,507,122 - +0.3 1,507,190 + BWI76_RS07175 0.11 -1.4 1,507,197 - BWI76_RS07175 0.12 +2.8 1,507,231 - BWI76_RS07175 0.16 +0.3 1,507,231 - BWI76_RS07175 0.16 -0.2 1,507,233 + BWI76_RS07175 0.16 -0.9 1,507,269 - BWI76_RS07175 0.21 -2.2 1,507,313 + BWI76_RS07175 0.26 -0.5 1,507,318 + BWI76_RS07175 0.26 -2.2 1,507,387 - BWI76_RS07175 0.34 -0.9 1,507,408 - BWI76_RS07175 0.37 +0.1 1,507,408 - BWI76_RS07175 0.37 -2.5 1,507,480 + BWI76_RS07175 0.45 -0.4 1,507,558 + BWI76_RS07175 0.54 -0.5 1,507,569 - BWI76_RS07175 0.55 -1.0 1,507,602 + BWI76_RS07175 0.59 -1.3 1,507,610 - BWI76_RS07175 0.60 +0.2 1,507,643 - BWI76_RS07175 0.64 +0.3 1,507,816 - BWI76_RS07175 0.84 +0.3 1,507,822 + BWI76_RS07175 0.84 -3.9 1,507,830 - BWI76_RS07175 0.85 +0.3 1,507,844 - BWI76_RS07175 0.87 -0.8 1,507,853 + BWI76_RS07175 0.88 -0.7 1,507,859 + BWI76_RS07175 0.89 -0.9 1,507,869 - BWI76_RS07175 0.90 +0.2 1,507,894 + -0.1 1,507,930 + -0.5 1,507,991 + -2.8 1,507,991 + -0.1 1,507,999 - -1.7 1,508,022 - +1.8 1,508,030 - +1.6 1,508,030 - -0.1 1,508,048 + +0.5 1,508,081 + -1.1 1,508,082 - -0.0 1,508,082 - +1.1 1,508,084 - +0.1 1,508,089 - +0.2 1,508,089 - +1.0 1,508,089 - -2.1 1,508,089 - -1.2 1,508,092 - +0.9 1,508,129 + -1.3 1,508,131 - -0.3 1,508,137 - -0.5 1,508,266 - -0.7 1,508,320 + +0.2 1,508,393 + -1.5 1,508,403 + -1.0 1,508,955 + BWI76_RS07180 0.42 -1.1
Or see this region's nucleotide sequence