Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03705 and BWI76_RS03710 overlap by 11 nucleotides BWI76_RS03710 and BWI76_RS03715 are separated by 2 nucleotides
BWI76_RS03705: BWI76_RS03705 - secretion protein, at 768,883 to 769,950
_RS03705
BWI76_RS03710: BWI76_RS03710 - hypothetical protein, at 769,940 to 771,004
_RS03710
BWI76_RS03715: BWI76_RS03715 - hypothetical protein, at 771,007 to 771,921
_RS03715
Position (kb) 769
770
771
772 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 768.950 kb on - strand at 769.219 kb on - strand, within BWI76_RS03705 at 769.228 kb on + strand, within BWI76_RS03705 at 769.228 kb on + strand, within BWI76_RS03705 at 769.228 kb on + strand, within BWI76_RS03705 at 769.236 kb on - strand, within BWI76_RS03705 at 769.247 kb on + strand, within BWI76_RS03705 at 769.317 kb on - strand, within BWI76_RS03705 at 769.529 kb on + strand, within BWI76_RS03705 at 769.532 kb on - strand, within BWI76_RS03705 at 769.532 kb on - strand, within BWI76_RS03705 at 769.537 kb on + strand, within BWI76_RS03705 at 769.640 kb on - strand, within BWI76_RS03705 at 769.732 kb on - strand, within BWI76_RS03705 at 769.869 kb on - strand at 769.877 kb on - strand at 769.930 kb on + strand at 769.971 kb on - strand at 770.171 kb on + strand, within BWI76_RS03710 at 770.210 kb on + strand, within BWI76_RS03710 at 770.372 kb on + strand, within BWI76_RS03710 at 770.372 kb on + strand, within BWI76_RS03710 at 770.380 kb on - strand, within BWI76_RS03710 at 770.380 kb on - strand, within BWI76_RS03710 at 770.672 kb on - strand, within BWI76_RS03710 at 770.677 kb on - strand, within BWI76_RS03710 at 770.677 kb on - strand, within BWI76_RS03710 at 770.732 kb on - strand, within BWI76_RS03710 at 770.768 kb on - strand, within BWI76_RS03710 at 770.813 kb on + strand, within BWI76_RS03710 at 770.978 kb on - strand at 771.005 kb on + strand at 771.090 kb on + strand at 771.103 kb on - strand, within BWI76_RS03715 at 771.120 kb on - strand, within BWI76_RS03715 at 771.329 kb on - strand, within BWI76_RS03715 at 771.424 kb on + strand, within BWI76_RS03715 at 771.432 kb on - strand, within BWI76_RS03715 at 771.432 kb on - strand, within BWI76_RS03715 at 771.432 kb on - strand, within BWI76_RS03715 at 771.561 kb on + strand, within BWI76_RS03715 at 771.561 kb on + strand, within BWI76_RS03715 at 771.566 kb on + strand, within BWI76_RS03715 at 771.586 kb on + strand, within BWI76_RS03715 at 771.600 kb on + strand, within BWI76_RS03715 at 771.616 kb on - strand, within BWI76_RS03715 at 771.661 kb on + strand, within BWI76_RS03715 at 771.805 kb on - strand, within BWI76_RS03715 at 771.842 kb on - strand at 771.873 kb on + strand at 771.901 kb on - strand at 771.931 kb on + strand at 771.933 kb on + strand at 771.941 kb on - strand at 771.946 kb on - strand at 771.949 kb on + strand at 771.962 kb on - strand at 771.962 kb on - strand at 771.970 kb on - strand at 771.970 kb on - strand at 771.972 kb on + strand at 771.980 kb on - strand at 771.992 kb on - strand at 772.000 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 768,950 - -0.2 769,219 - BWI76_RS03705 0.31 +0.1 769,228 + BWI76_RS03705 0.32 -0.3 769,228 + BWI76_RS03705 0.32 +0.7 769,228 + BWI76_RS03705 0.32 -2.1 769,236 - BWI76_RS03705 0.33 -0.3 769,247 + BWI76_RS03705 0.34 -2.0 769,317 - BWI76_RS03705 0.41 -1.1 769,529 + BWI76_RS03705 0.60 +1.3 769,532 - BWI76_RS03705 0.61 +0.4 769,532 - BWI76_RS03705 0.61 -2.4 769,537 + BWI76_RS03705 0.61 -0.7 769,640 - BWI76_RS03705 0.71 +1.2 769,732 - BWI76_RS03705 0.79 -0.1 769,869 - -1.0 769,877 - +0.4 769,930 + -0.4 769,971 - +1.2 770,171 + BWI76_RS03710 0.22 -0.6 770,210 + BWI76_RS03710 0.25 +0.6 770,372 + BWI76_RS03710 0.41 +0.7 770,372 + BWI76_RS03710 0.41 +0.6 770,380 - BWI76_RS03710 0.41 +1.1 770,380 - BWI76_RS03710 0.41 +3.0 770,672 - BWI76_RS03710 0.69 +0.9 770,677 - BWI76_RS03710 0.69 +0.1 770,677 - BWI76_RS03710 0.69 -0.4 770,732 - BWI76_RS03710 0.74 +1.1 770,768 - BWI76_RS03710 0.78 +0.0 770,813 + BWI76_RS03710 0.82 +2.0 770,978 - +1.0 771,005 + +1.5 771,090 + -1.8 771,103 - BWI76_RS03715 0.10 -0.4 771,120 - BWI76_RS03715 0.12 +0.5 771,329 - BWI76_RS03715 0.35 -0.8 771,424 + BWI76_RS03715 0.46 +0.9 771,432 - BWI76_RS03715 0.46 -1.2 771,432 - BWI76_RS03715 0.46 -0.3 771,432 - BWI76_RS03715 0.46 +0.8 771,561 + BWI76_RS03715 0.61 -3.5 771,561 + BWI76_RS03715 0.61 -0.2 771,566 + BWI76_RS03715 0.61 +1.3 771,586 + BWI76_RS03715 0.63 +0.1 771,600 + BWI76_RS03715 0.65 -0.1 771,616 - BWI76_RS03715 0.67 -0.7 771,661 + BWI76_RS03715 0.71 -1.0 771,805 - BWI76_RS03715 0.87 -4.2 771,842 - -0.9 771,873 + +2.1 771,901 - -3.0 771,931 + -0.9 771,933 + -2.1 771,941 - +1.0 771,946 - -2.1 771,949 + -0.9 771,962 - +0.5 771,962 - +0.4 771,970 - +0.7 771,970 - +0.3 771,972 + +1.6 771,980 - -3.5 771,992 - +1.2 772,000 - -1.7
Or see this region's nucleotide sequence