Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01950 and BWI76_RS01955 are separated by 246 nucleotides BWI76_RS01955 and BWI76_RS01960 are separated by 86 nucleotides BWI76_RS01960 and BWI76_RS01965 are separated by 606 nucleotides
BWI76_RS01950: BWI76_RS01950 - excinuclease ABC subunit A, at 395,886 to 398,711
_RS01950
BWI76_RS01955: BWI76_RS01955 - ssDNA-binding protein, at 398,958 to 399,485
_RS01955
BWI76_RS01960: BWI76_RS01960 - lytic transglycosylase F, at 399,572 to 401,098
_RS01960
BWI76_RS01965: BWI76_RS01965 - TonB-dependent siderophore receptor, at 401,705 to 403,966
_RS01965
Position (kb) 399
400
401
402 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 398.591 kb on - strand at 398.606 kb on - strand at 398.695 kb on + strand at 399.518 kb on - strand at 399.728 kb on - strand, within BWI76_RS01960 at 399.851 kb on + strand, within BWI76_RS01960 at 399.867 kb on + strand, within BWI76_RS01960 at 399.867 kb on - strand, within BWI76_RS01960 at 399.886 kb on - strand, within BWI76_RS01960 at 399.931 kb on + strand, within BWI76_RS01960 at 399.939 kb on - strand, within BWI76_RS01960 at 399.955 kb on - strand, within BWI76_RS01960 at 399.960 kb on - strand, within BWI76_RS01960 at 400.004 kb on + strand, within BWI76_RS01960 at 400.016 kb on - strand, within BWI76_RS01960 at 400.016 kb on - strand, within BWI76_RS01960 at 400.030 kb on + strand, within BWI76_RS01960 at 400.033 kb on + strand, within BWI76_RS01960 at 400.040 kb on + strand, within BWI76_RS01960 at 400.040 kb on + strand, within BWI76_RS01960 at 400.048 kb on - strand, within BWI76_RS01960 at 400.048 kb on - strand, within BWI76_RS01960 at 400.165 kb on + strand, within BWI76_RS01960 at 400.165 kb on + strand, within BWI76_RS01960 at 400.173 kb on - strand, within BWI76_RS01960 at 400.173 kb on - strand, within BWI76_RS01960 at 400.173 kb on - strand, within BWI76_RS01960 at 400.173 kb on - strand, within BWI76_RS01960 at 400.173 kb on - strand, within BWI76_RS01960 at 400.196 kb on - strand, within BWI76_RS01960 at 400.196 kb on - strand, within BWI76_RS01960 at 400.249 kb on + strand, within BWI76_RS01960 at 400.334 kb on + strand, within BWI76_RS01960 at 400.382 kb on + strand, within BWI76_RS01960 at 400.390 kb on - strand, within BWI76_RS01960 at 400.400 kb on - strand, within BWI76_RS01960 at 400.567 kb on + strand, within BWI76_RS01960 at 400.611 kb on + strand, within BWI76_RS01960 at 400.613 kb on + strand, within BWI76_RS01960 at 400.619 kb on - strand, within BWI76_RS01960 at 400.624 kb on + strand, within BWI76_RS01960 at 400.625 kb on + strand, within BWI76_RS01960 at 400.632 kb on - strand, within BWI76_RS01960 at 400.632 kb on - strand, within BWI76_RS01960 at 400.667 kb on - strand, within BWI76_RS01960 at 400.674 kb on - strand at 400.707 kb on + strand, within BWI76_RS01960 at 400.715 kb on - strand, within BWI76_RS01960 at 400.715 kb on - strand at 400.717 kb on + strand, within BWI76_RS01960 at 400.725 kb on - strand, within BWI76_RS01960 at 400.740 kb on - strand, within BWI76_RS01960 at 400.750 kb on + strand, within BWI76_RS01960 at 400.758 kb on - strand, within BWI76_RS01960 at 400.773 kb on + strand, within BWI76_RS01960 at 400.795 kb on + strand, within BWI76_RS01960 at 400.795 kb on + strand, within BWI76_RS01960 at 400.795 kb on + strand, within BWI76_RS01960 at 400.795 kb on + strand, within BWI76_RS01960 at 400.795 kb on + strand, within BWI76_RS01960 at 400.803 kb on - strand, within BWI76_RS01960 at 400.803 kb on - strand, within BWI76_RS01960 at 400.803 kb on - strand, within BWI76_RS01960 at 400.806 kb on + strand, within BWI76_RS01960 at 400.852 kb on - strand, within BWI76_RS01960 at 400.852 kb on - strand, within BWI76_RS01960 at 400.929 kb on + strand, within BWI76_RS01960 at 400.940 kb on + strand, within BWI76_RS01960 at 400.948 kb on - strand at 400.953 kb on + strand at 400.965 kb on + strand at 400.975 kb on - strand at 400.975 kb on - strand at 400.992 kb on - strand at 401.031 kb on + strand at 401.032 kb on + strand at 401.039 kb on - strand at 401.039 kb on - strand at 401.071 kb on + strand at 401.079 kb on - strand at 401.079 kb on - strand at 401.079 kb on - strand at 401.079 kb on - strand at 401.079 kb on - strand at 401.085 kb on + strand at 401.089 kb on - strand at 401.091 kb on + strand at 401.091 kb on - strand at 401.101 kb on - strand at 401.105 kb on + strand at 401.105 kb on + strand at 401.105 kb on + strand at 401.105 kb on + strand at 401.105 kb on + strand at 401.107 kb on + strand at 401.107 kb on + strand at 401.113 kb on - strand at 401.115 kb on + strand at 401.115 kb on - strand at 401.118 kb on - strand at 401.120 kb on - strand at 401.123 kb on + strand at 401.123 kb on + strand at 401.125 kb on - strand at 401.130 kb on - strand at 401.138 kb on + strand at 401.151 kb on + strand at 401.169 kb on - strand at 401.169 kb on - strand at 401.179 kb on - strand at 401.200 kb on - strand at 401.450 kb on + strand at 401.450 kb on + strand at 401.453 kb on - strand at 401.457 kb on + strand at 401.458 kb on - strand at 401.462 kb on + strand at 401.472 kb on + strand at 401.483 kb on - strand at 401.486 kb on + strand at 401.492 kb on + strand at 401.492 kb on + strand at 401.500 kb on - strand at 401.587 kb on + strand at 401.587 kb on + strand at 401.588 kb on + strand at 401.588 kb on + strand at 401.595 kb on - strand at 401.595 kb on - strand at 401.599 kb on + strand at 401.609 kb on + strand at 401.609 kb on + strand at 401.609 kb on + strand at 401.612 kb on + strand at 401.612 kb on + strand at 401.617 kb on - strand at 401.617 kb on - strand at 401.617 kb on - strand at 401.619 kb on - strand at 401.640 kb on + strand at 401.655 kb on + strand at 401.667 kb on - strand at 401.668 kb on + strand at 401.668 kb on + strand at 401.672 kb on - strand at 401.676 kb on - strand at 401.725 kb on + strand at 401.760 kb on - strand at 401.760 kb on - strand at 401.760 kb on - strand at 401.774 kb on + strand at 401.804 kb on - strand at 401.884 kb on - strand at 401.904 kb on + strand at 401.904 kb on + strand at 401.934 kb on + strand, within BWI76_RS01965 at 401.968 kb on - strand, within BWI76_RS01965 at 401.989 kb on + strand, within BWI76_RS01965 at 402.065 kb on + strand, within BWI76_RS01965 at 402.087 kb on + strand, within BWI76_RS01965
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 398,591 - +1.1 398,606 - -2.9 398,695 + -1.5 399,518 - +0.6 399,728 - BWI76_RS01960 0.10 +1.7 399,851 + BWI76_RS01960 0.18 -1.7 399,867 + BWI76_RS01960 0.19 -3.1 399,867 - BWI76_RS01960 0.19 +0.5 399,886 - BWI76_RS01960 0.21 +0.6 399,931 + BWI76_RS01960 0.24 +0.1 399,939 - BWI76_RS01960 0.24 +0.3 399,955 - BWI76_RS01960 0.25 +0.9 399,960 - BWI76_RS01960 0.25 +0.0 400,004 + BWI76_RS01960 0.28 -1.0 400,016 - BWI76_RS01960 0.29 -0.5 400,016 - BWI76_RS01960 0.29 -3.0 400,030 + BWI76_RS01960 0.30 -1.6 400,033 + BWI76_RS01960 0.30 -0.1 400,040 + BWI76_RS01960 0.31 -0.6 400,040 + BWI76_RS01960 0.31 -0.8 400,048 - BWI76_RS01960 0.31 +1.3 400,048 - BWI76_RS01960 0.31 -0.5 400,165 + BWI76_RS01960 0.39 -1.0 400,165 + BWI76_RS01960 0.39 -2.0 400,173 - BWI76_RS01960 0.39 -0.1 400,173 - BWI76_RS01960 0.39 +1.5 400,173 - BWI76_RS01960 0.39 -0.9 400,173 - BWI76_RS01960 0.39 +0.1 400,173 - BWI76_RS01960 0.39 -1.1 400,196 - BWI76_RS01960 0.41 +1.3 400,196 - BWI76_RS01960 0.41 +0.7 400,249 + BWI76_RS01960 0.44 +1.3 400,334 + BWI76_RS01960 0.50 +0.7 400,382 + BWI76_RS01960 0.53 +0.8 400,390 - BWI76_RS01960 0.54 -1.6 400,400 - BWI76_RS01960 0.54 -0.1 400,567 + BWI76_RS01960 0.65 -2.8 400,611 + BWI76_RS01960 0.68 -0.1 400,613 + BWI76_RS01960 0.68 -0.6 400,619 - BWI76_RS01960 0.69 -1.6 400,624 + BWI76_RS01960 0.69 +0.8 400,625 + BWI76_RS01960 0.69 -3.5 400,632 - BWI76_RS01960 0.69 -0.5 400,632 - BWI76_RS01960 0.69 +1.3 400,667 - BWI76_RS01960 0.72 +1.1 400,674 - +0.3 400,707 + BWI76_RS01960 0.74 +0.5 400,715 - BWI76_RS01960 0.75 -3.4 400,715 - +1.3 400,717 + BWI76_RS01960 0.75 -0.1 400,725 - BWI76_RS01960 0.76 -0.1 400,740 - BWI76_RS01960 0.76 -0.6 400,750 + BWI76_RS01960 0.77 -0.9 400,758 - BWI76_RS01960 0.78 -1.2 400,773 + BWI76_RS01960 0.79 -0.9 400,795 + BWI76_RS01960 0.80 -1.6 400,795 + BWI76_RS01960 0.80 +2.9 400,795 + BWI76_RS01960 0.80 +1.2 400,795 + BWI76_RS01960 0.80 -2.5 400,795 + BWI76_RS01960 0.80 -1.9 400,803 - BWI76_RS01960 0.81 -2.5 400,803 - BWI76_RS01960 0.81 -0.2 400,803 - BWI76_RS01960 0.81 +0.3 400,806 + BWI76_RS01960 0.81 +2.3 400,852 - BWI76_RS01960 0.84 -0.1 400,852 - BWI76_RS01960 0.84 -0.4 400,929 + BWI76_RS01960 0.89 +0.1 400,940 + BWI76_RS01960 0.90 +0.9 400,948 - -0.4 400,953 + +0.2 400,965 + -0.3 400,975 - +3.3 400,975 - -1.6 400,992 - +1.8 401,031 + -0.5 401,032 + +0.7 401,039 - -1.5 401,039 - -0.1 401,071 + -0.6 401,079 - -0.8 401,079 - +0.2 401,079 - +0.8 401,079 - -2.6 401,079 - -1.0 401,085 + +2.9 401,089 - +0.1 401,091 + -1.4 401,091 - -2.3 401,101 - -4.0 401,105 + -2.6 401,105 + +0.8 401,105 + +0.3 401,105 + -0.7 401,105 + +1.3 401,107 + -1.3 401,107 + +0.3 401,113 - +1.2 401,115 + -0.1 401,115 - -1.6 401,118 - +2.6 401,120 - -0.0 401,123 + -3.2 401,123 + -0.2 401,125 - -2.9 401,130 - -1.8 401,138 + -1.6 401,151 + -3.0 401,169 - +0.5 401,169 - +1.7 401,179 - +3.1 401,200 - +1.0 401,450 + +1.2 401,450 + -2.6 401,453 - +0.9 401,457 + -2.6 401,458 - -0.3 401,462 + -0.1 401,472 + -1.8 401,483 - -3.2 401,486 + +0.2 401,492 + +1.0 401,492 + +0.7 401,500 - +2.2 401,587 + -0.2 401,587 + +2.1 401,588 + +1.5 401,588 + -3.5 401,595 - -1.0 401,595 - -3.4 401,599 + -0.2 401,609 + -3.0 401,609 + -3.5 401,609 + -2.2 401,612 + -0.8 401,612 + +1.9 401,617 - -0.6 401,617 - +0.2 401,617 - +0.3 401,619 - +0.5 401,640 + +1.3 401,655 + -2.1 401,667 - -1.7 401,668 + +2.9 401,668 + +0.6 401,672 - -0.3 401,676 - -3.4 401,725 + -1.9 401,760 - -1.9 401,760 - -1.0 401,760 - -0.4 401,774 + -2.5 401,804 - -1.2 401,884 - -0.1 401,904 + +1.3 401,904 + -1.5 401,934 + BWI76_RS01965 0.10 +1.1 401,968 - BWI76_RS01965 0.12 +0.0 401,989 + BWI76_RS01965 0.13 -0.1 402,065 + BWI76_RS01965 0.16 -1.6 402,087 + BWI76_RS01965 0.17 -1.5
Or see this region's nucleotide sequence