Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01260 and BWI76_RS01265 are separated by 43 nucleotides BWI76_RS01265 and BWI76_RS01270 are separated by 88 nucleotides BWI76_RS01270 and BWI76_RS01275 overlap by 113 nucleotides
BWI76_RS01260: BWI76_RS01260 - lysophospholipase L2, at 258,083 to 259,075
_RS01260
BWI76_RS01265: BWI76_RS01265 - sugar/pyridoxal phosphate phosphatase YigL, at 259,119 to 259,919
_RS01265
BWI76_RS01270: BWI76_RS01270 - hypothetical protein, at 260,008 to 260,907
_RS01270
BWI76_RS01275: BWI76_RS01275 - LysR family transcriptional regulator, at 260,795 to 261,748
_RS01275
Position (kb) 259
260 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 258.332 kb on - strand, within BWI76_RS01260 at 258.485 kb on + strand, within BWI76_RS01260 at 258.620 kb on + strand, within BWI76_RS01260 at 258.620 kb on + strand, within BWI76_RS01260 at 258.628 kb on - strand, within BWI76_RS01260 at 258.689 kb on + strand, within BWI76_RS01260 at 258.907 kb on - strand, within BWI76_RS01260 at 258.955 kb on - strand, within BWI76_RS01260 at 258.963 kb on + strand, within BWI76_RS01260 at 259.069 kb on + strand at 259.099 kb on + strand at 259.099 kb on + strand at 259.186 kb on + strand at 259.508 kb on - strand, within BWI76_RS01265 at 259.635 kb on + strand, within BWI76_RS01265 at 259.660 kb on + strand, within BWI76_RS01265 at 259.701 kb on - strand, within BWI76_RS01265 at 259.750 kb on - strand, within BWI76_RS01265 at 259.760 kb on + strand, within BWI76_RS01265 at 259.769 kb on - strand, within BWI76_RS01265 at 259.806 kb on + strand, within BWI76_RS01265 at 259.846 kb on - strand at 260.025 kb on - strand at 260.056 kb on - strand at 260.125 kb on + strand, within BWI76_RS01270 at 260.163 kb on + strand, within BWI76_RS01270 at 260.184 kb on + strand, within BWI76_RS01270 at 260.206 kb on - strand, within BWI76_RS01270 at 260.450 kb on + strand, within BWI76_RS01270 at 260.451 kb on + strand, within BWI76_RS01270 at 260.459 kb on - strand, within BWI76_RS01270 at 260.522 kb on - strand, within BWI76_RS01270 at 260.522 kb on - strand, within BWI76_RS01270 at 260.578 kb on - strand, within BWI76_RS01270
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 258,332 - BWI76_RS01260 0.25 -1.9 258,485 + BWI76_RS01260 0.40 +0.3 258,620 + BWI76_RS01260 0.54 +0.1 258,620 + BWI76_RS01260 0.54 +0.3 258,628 - BWI76_RS01260 0.55 +1.8 258,689 + BWI76_RS01260 0.61 +0.3 258,907 - BWI76_RS01260 0.83 +0.4 258,955 - BWI76_RS01260 0.88 -0.3 258,963 + BWI76_RS01260 0.89 -2.3 259,069 + -3.0 259,099 + -0.0 259,099 + +0.2 259,186 + +0.6 259,508 - BWI76_RS01265 0.49 +0.4 259,635 + BWI76_RS01265 0.64 +0.4 259,660 + BWI76_RS01265 0.68 +0.8 259,701 - BWI76_RS01265 0.73 +1.0 259,750 - BWI76_RS01265 0.79 +0.9 259,760 + BWI76_RS01265 0.80 +1.6 259,769 - BWI76_RS01265 0.81 +1.7 259,806 + BWI76_RS01265 0.86 +0.8 259,846 - -0.4 260,025 - +1.0 260,056 - +3.8 260,125 + BWI76_RS01270 0.13 +0.1 260,163 + BWI76_RS01270 0.17 -1.9 260,184 + BWI76_RS01270 0.20 +0.6 260,206 - BWI76_RS01270 0.22 -2.5 260,450 + BWI76_RS01270 0.49 +0.6 260,451 + BWI76_RS01270 0.49 -3.3 260,459 - BWI76_RS01270 0.50 -1.4 260,522 - BWI76_RS01270 0.57 +1.3 260,522 - BWI76_RS01270 0.57 -0.2 260,578 - BWI76_RS01270 0.63 -0.7
Or see this region's nucleotide sequence