Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_832

Experiment: Ying_Others16 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_830 and Pf6N2E2_831 are separated by 57 nucleotidesPf6N2E2_831 and Pf6N2E2_832 are separated by 48 nucleotidesPf6N2E2_832 and Pf6N2E2_833 are separated by 383 nucleotides Pf6N2E2_830 - Long-chain fatty acid transport protein, at 968,049 to 969,320 _830 Pf6N2E2_831 - Ketoacyl reductase hetN (EC 1.3.1.-), at 969,378 to 970,163 _831 Pf6N2E2_832 - Outer membrane component of tripartite multidrug resistance system, at 970,212 to 971,675 _832 Pf6N2E2_833 - Probable Co/Zn/Cd efflux system membrane fusion protein, at 972,059 to 973,003 _833 Position (kb) 970 971 972Strain fitness (log2 ratio) -2 -1 0 1at 969.258 kb on + strandat 969.258 kb on + strandat 969.258 kb on + strandat 969.258 kb on + strandat 969.258 kb on + strandat 969.259 kb on - strandat 969.259 kb on - strandat 969.296 kb on + strandat 969.297 kb on - strandat 969.680 kb on - strand, within Pf6N2E2_831at 969.697 kb on + strand, within Pf6N2E2_831at 969.697 kb on + strand, within Pf6N2E2_831at 969.698 kb on - strand, within Pf6N2E2_831at 969.725 kb on - strand, within Pf6N2E2_831at 970.087 kb on + strandat 970.195 kb on + strandat 970.196 kb on - strandat 970.391 kb on - strand, within Pf6N2E2_832at 970.437 kb on + strand, within Pf6N2E2_832at 970.717 kb on + strand, within Pf6N2E2_832at 970.717 kb on + strand, within Pf6N2E2_832at 970.718 kb on - strand, within Pf6N2E2_832at 970.800 kb on + strand, within Pf6N2E2_832at 970.801 kb on - strand, within Pf6N2E2_832at 970.814 kb on + strand, within Pf6N2E2_832at 970.999 kb on + strand, within Pf6N2E2_832at 970.999 kb on + strand, within Pf6N2E2_832at 970.999 kb on + strand, within Pf6N2E2_832at 971.024 kb on - strand, within Pf6N2E2_832at 971.082 kb on - strand, within Pf6N2E2_832at 971.116 kb on + strand, within Pf6N2E2_832at 971.116 kb on + strand, within Pf6N2E2_832at 971.116 kb on + strand, within Pf6N2E2_832at 971.116 kb on + strand, within Pf6N2E2_832at 971.116 kb on + strand, within Pf6N2E2_832at 971.116 kb on + strand, within Pf6N2E2_832at 971.116 kb on + strand, within Pf6N2E2_832at 971.116 kb on + strand, within Pf6N2E2_832at 971.116 kb on + strand, within Pf6N2E2_832at 971.117 kb on - strand, within Pf6N2E2_832at 971.117 kb on - strand, within Pf6N2E2_832at 971.117 kb on - strand, within Pf6N2E2_832at 971.117 kb on - strand, within Pf6N2E2_832at 971.117 kb on - strand, within Pf6N2E2_832at 971.117 kb on - strand, within Pf6N2E2_832at 971.117 kb on - strand, within Pf6N2E2_832at 971.117 kb on - strand, within Pf6N2E2_832at 971.117 kb on - strand, within Pf6N2E2_832at 971.117 kb on - strand, within Pf6N2E2_832at 971.263 kb on + strand, within Pf6N2E2_832at 971.263 kb on + strand, within Pf6N2E2_832at 971.263 kb on + strand, within Pf6N2E2_832at 971.263 kb on + strand, within Pf6N2E2_832at 971.264 kb on - strand, within Pf6N2E2_832at 971.360 kb on + strand, within Pf6N2E2_832at 971.360 kb on + strand, within Pf6N2E2_832at 971.361 kb on - strand, within Pf6N2E2_832at 971.534 kb on + strandat 971.602 kb on + strandat 971.603 kb on - strandat 971.646 kb on + strandat 971.762 kb on + strandat 971.763 kb on - strandat 971.763 kb on - strandat 971.772 kb on + strandat 971.893 kb on + strandat 971.893 kb on + strandat 971.893 kb on + strandat 971.893 kb on + strandat 971.893 kb on + strandat 971.894 kb on - strandat 971.894 kb on - strandat 971.894 kb on - strandat 971.894 kb on - strandat 971.894 kb on - strandat 971.894 kb on - strandat 971.894 kb on - strandat 971.894 kb on - strandat 972.399 kb on - strand, within Pf6N2E2_833at 972.649 kb on + strand, within Pf6N2E2_833at 972.650 kb on - strand, within Pf6N2E2_833at 972.665 kb on + strand, within Pf6N2E2_833at 972.666 kb on - strand, within Pf6N2E2_833

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2
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969,258 + +0.8
969,258 + -1.0
969,258 + -2.2
969,258 + -0.7
969,258 + +0.8
969,259 - -0.2
969,259 - -0.2
969,296 + -0.9
969,297 - -0.7
969,680 - Pf6N2E2_831 0.38 +0.8
969,697 + Pf6N2E2_831 0.41 -1.1
969,697 + Pf6N2E2_831 0.41 +0.6
969,698 - Pf6N2E2_831 0.41 +0.8
969,725 - Pf6N2E2_831 0.44 +0.0
970,087 + +0.8
970,195 + -0.2
970,196 - +0.8
970,391 - Pf6N2E2_832 0.12 -0.7
970,437 + Pf6N2E2_832 0.15 -0.2
970,717 + Pf6N2E2_832 0.34 -0.2
970,717 + Pf6N2E2_832 0.34 +0.2
970,718 - Pf6N2E2_832 0.35 -0.3
970,800 + Pf6N2E2_832 0.40 -0.5
970,801 - Pf6N2E2_832 0.40 +0.8
970,814 + Pf6N2E2_832 0.41 +0.8
970,999 + Pf6N2E2_832 0.54 -0.2
970,999 + Pf6N2E2_832 0.54 -0.2
970,999 + Pf6N2E2_832 0.54 -0.7
971,024 - Pf6N2E2_832 0.55 -0.2
971,082 - Pf6N2E2_832 0.59 +0.1
971,116 + Pf6N2E2_832 0.62 +0.0
971,116 + Pf6N2E2_832 0.62 -0.7
971,116 + Pf6N2E2_832 0.62 -0.2
971,116 + Pf6N2E2_832 0.62 -0.6
971,116 + Pf6N2E2_832 0.62 +0.8
971,116 + Pf6N2E2_832 0.62 -1.0
971,116 + Pf6N2E2_832 0.62 +0.8
971,116 + Pf6N2E2_832 0.62 +0.8
971,116 + Pf6N2E2_832 0.62 +0.4
971,117 - Pf6N2E2_832 0.62 -0.7
971,117 - Pf6N2E2_832 0.62 +0.8
971,117 - Pf6N2E2_832 0.62 -0.2
971,117 - Pf6N2E2_832 0.62 +0.8
971,117 - Pf6N2E2_832 0.62 +0.8
971,117 - Pf6N2E2_832 0.62 -0.7
971,117 - Pf6N2E2_832 0.62 +0.8
971,117 - Pf6N2E2_832 0.62 -0.2
971,117 - Pf6N2E2_832 0.62 +0.8
971,117 - Pf6N2E2_832 0.62 -0.4
971,263 + Pf6N2E2_832 0.72 -0.2
971,263 + Pf6N2E2_832 0.72 -0.2
971,263 + Pf6N2E2_832 0.72 +0.4
971,263 + Pf6N2E2_832 0.72 +0.8
971,264 - Pf6N2E2_832 0.72 +0.8
971,360 + Pf6N2E2_832 0.78 -0.2
971,360 + Pf6N2E2_832 0.78 +0.8
971,361 - Pf6N2E2_832 0.78 -0.2
971,534 + -1.2
971,602 + -1.3
971,603 - -0.2
971,646 + +0.8
971,762 + +0.8
971,763 - -1.1
971,763 - +0.8
971,772 + -0.7
971,893 + -0.2
971,893 + +0.8
971,893 + -0.5
971,893 + -0.7
971,893 + +0.8
971,894 - -1.1
971,894 - +0.8
971,894 - -0.2
971,894 - -0.5
971,894 - +0.8
971,894 - -0.2
971,894 - +0.8
971,894 - -1.0
972,399 - Pf6N2E2_833 0.36 -0.5
972,649 + Pf6N2E2_833 0.62 +0.8
972,650 - Pf6N2E2_833 0.63 +0.8
972,665 + Pf6N2E2_833 0.64 +0.8
972,666 - Pf6N2E2_833 0.64 -1.7

Or see this region's nucleotide sequence