Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5849 and Pf6N2E2_5850 are separated by 288 nucleotides Pf6N2E2_5850 and Pf6N2E2_5851 are separated by 482 nucleotides Pf6N2E2_5851 and Pf6N2E2_5852 overlap by 7 nucleotides
Pf6N2E2_5849 - large component of pyruvate transporter (actP-like) (from data) , at 6,664,670 to 6,666,328
_5849
Pf6N2E2_5850 - Citrate synthase (si) (EC 2.3.3.1), at 6,666,617 to 6,667,906
_5850
Pf6N2E2_5851 - Succinate dehydrogenase cytochrome b-556 subunit, at 6,668,389 to 6,668,646
_5851
Pf6N2E2_5852 - Succinate dehydrogenase hydrophobic membrane anchor protein, at 6,668,640 to 6,669,008
_5852
Position (kb)
6666
6667
6668 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 6665.837 kb on + strand, within Pf6N2E2_5849 at 6665.838 kb on - strand, within Pf6N2E2_5849 at 6666.032 kb on + strand, within Pf6N2E2_5849 at 6666.032 kb on + strand, within Pf6N2E2_5849 at 6666.362 kb on + strand at 6666.404 kb on - strand at 6666.527 kb on + strand at 6666.527 kb on + strand at 6666.528 kb on - strand at 6666.561 kb on + strand at 6666.561 kb on + strand at 6666.561 kb on + strand at 6666.561 kb on + strand at 6666.561 kb on + strand at 6666.561 kb on + strand at 6666.561 kb on + strand at 6666.561 kb on + strand at 6666.561 kb on + strand at 6666.561 kb on + strand at 6666.561 kb on + strand at 6666.562 kb on - strand at 6666.562 kb on - strand at 6666.562 kb on - strand at 6666.562 kb on - strand at 6666.562 kb on - strand at 6666.562 kb on - strand at 6666.563 kb on + strand at 6666.563 kb on + strand at 6666.563 kb on + strand at 6666.563 kb on + strand at 6666.563 kb on + strand at 6666.564 kb on - strand at 6666.564 kb on - strand at 6666.564 kb on - strand at 6666.564 kb on - strand at 6666.564 kb on - strand at 6666.564 kb on - strand at 6666.564 kb on - strand at 6666.564 kb on - strand at 6666.564 kb on - strand at 6666.565 kb on + strand at 6666.565 kb on + strand at 6666.565 kb on + strand at 6666.565 kb on + strand at 6666.565 kb on + strand at 6666.566 kb on - strand at 6666.566 kb on - strand at 6666.566 kb on - strand at 6666.566 kb on - strand at 6666.566 kb on - strand at 6666.566 kb on - strand at 6666.587 kb on + strand at 6666.588 kb on - strand at 6666.618 kb on + strand at 6666.618 kb on + strand at 6666.618 kb on + strand at 6666.618 kb on + strand at 6666.619 kb on - strand at 6667.917 kb on - strand at 6667.920 kb on - strand at 6667.920 kb on - strand at 6667.920 kb on - strand at 6667.968 kb on - strand at 6668.086 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 6,665,837 + Pf6N2E2_5849 0.70 +3.3 6,665,838 - Pf6N2E2_5849 0.70 -0.6 6,666,032 + Pf6N2E2_5849 0.82 -0.0 6,666,032 + Pf6N2E2_5849 0.82 -1.0 6,666,362 + +1.0 6,666,404 - +0.6 6,666,527 + -1.1 6,666,527 + -0.0 6,666,528 - +1.0 6,666,561 + -2.5 6,666,561 + -0.8 6,666,561 + -0.4 6,666,561 + +1.0 6,666,561 + -0.0 6,666,561 + -0.6 6,666,561 + -1.6 6,666,561 + +1.0 6,666,561 + +0.5 6,666,561 + +1.0 6,666,561 + +1.0 6,666,562 - -1.8 6,666,562 - -1.6 6,666,562 - -1.6 6,666,562 - +1.0 6,666,562 - +1.0 6,666,562 - -1.5 6,666,563 + -0.6 6,666,563 + -2.5 6,666,563 + -0.6 6,666,563 + +1.0 6,666,563 + -1.4 6,666,564 - -0.8 6,666,564 - -2.4 6,666,564 - +1.0 6,666,564 - -0.6 6,666,564 - -2.8 6,666,564 - -1.4 6,666,564 - +1.0 6,666,564 - -0.6 6,666,564 - +1.0 6,666,565 + -0.0 6,666,565 + -0.6 6,666,565 + -0.4 6,666,565 + +1.0 6,666,565 + +1.0 6,666,566 - -0.2 6,666,566 - -0.0 6,666,566 - +1.0 6,666,566 - -0.6 6,666,566 - -1.8 6,666,566 - +1.0 6,666,587 + -2.3 6,666,588 - -1.8 6,666,618 + +1.0 6,666,618 + -0.9 6,666,618 + -1.0 6,666,618 + -0.8 6,666,619 - -0.0 6,667,917 - +1.0 6,667,920 - +0.5 6,667,920 - +1.0 6,667,920 - -2.0 6,667,968 - -0.0 6,668,086 + -0.0
Or see this region's nucleotide sequence