Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5664 and Pf6N2E2_5665 are separated by 410 nucleotides Pf6N2E2_5665 and Pf6N2E2_5666 are separated by 249 nucleotides
Pf6N2E2_5664 - Arginine pathway regulatory protein ArgR, repressor of arg regulon, at 6,475,791 to 6,476,771
_5664
Pf6N2E2_5665 - Succinylornithine transaminase (EC 2.6.1.81), at 6,477,182 to 6,478,402
_5665
Pf6N2E2_5666 - Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109), at 6,478,652 to 6,479,671
_5666
Position (kb)
6477
6478
6479 Strain fitness (log2 ratio)
-8
-7
-6
-5
-4
-3
-2
-1
0
1 at 6476.210 kb on + strand, within Pf6N2E2_5664 at 6476.497 kb on + strand, within Pf6N2E2_5664 at 6476.498 kb on - strand, within Pf6N2E2_5664 at 6476.532 kb on + strand, within Pf6N2E2_5664 at 6476.533 kb on - strand, within Pf6N2E2_5664 at 6476.533 kb on - strand, within Pf6N2E2_5664 at 6476.533 kb on - strand, within Pf6N2E2_5664 at 6476.556 kb on + strand, within Pf6N2E2_5664 at 6476.556 kb on + strand, within Pf6N2E2_5664 at 6476.556 kb on + strand, within Pf6N2E2_5664 at 6476.557 kb on - strand, within Pf6N2E2_5664 at 6476.557 kb on - strand, within Pf6N2E2_5664 at 6476.559 kb on + strand, within Pf6N2E2_5664 at 6476.560 kb on - strand, within Pf6N2E2_5664 at 6476.560 kb on - strand, within Pf6N2E2_5664 at 6476.802 kb on + strand at 6476.802 kb on + strand at 6476.803 kb on - strand at 6476.976 kb on + strand at 6476.976 kb on + strand at 6476.976 kb on + strand at 6476.976 kb on + strand at 6476.976 kb on + strand at 6476.976 kb on + strand at 6476.976 kb on + strand at 6476.977 kb on - strand at 6476.977 kb on - strand at 6477.034 kb on - strand at 6477.051 kb on - strand at 6477.081 kb on - strand at 6477.081 kb on - strand at 6477.081 kb on - strand at 6477.125 kb on + strand at 6477.125 kb on + strand at 6477.126 kb on - strand at 6477.126 kb on - strand at 6477.126 kb on - strand at 6477.134 kb on + strand at 6477.205 kb on - strand at 6477.242 kb on + strand at 6477.242 kb on + strand at 6477.242 kb on + strand at 6477.242 kb on + strand at 6477.242 kb on + strand at 6477.242 kb on + strand at 6477.242 kb on + strand at 6477.242 kb on + strand at 6477.242 kb on + strand at 6477.242 kb on + strand at 6477.243 kb on - strand at 6477.243 kb on - strand at 6477.243 kb on - strand at 6477.243 kb on - strand at 6477.243 kb on - strand at 6477.243 kb on - strand at 6477.243 kb on - strand at 6477.243 kb on - strand at 6477.243 kb on - strand at 6477.243 kb on - strand at 6477.420 kb on + strand, within Pf6N2E2_5665 at 6477.421 kb on - strand, within Pf6N2E2_5665 at 6477.421 kb on - strand, within Pf6N2E2_5665 at 6477.421 kb on - strand, within Pf6N2E2_5665 at 6477.454 kb on + strand, within Pf6N2E2_5665 at 6477.454 kb on + strand, within Pf6N2E2_5665 at 6477.455 kb on - strand, within Pf6N2E2_5665 at 6477.455 kb on - strand, within Pf6N2E2_5665 at 6477.575 kb on + strand, within Pf6N2E2_5665 at 6477.575 kb on + strand, within Pf6N2E2_5665 at 6477.575 kb on + strand, within Pf6N2E2_5665 at 6477.598 kb on + strand, within Pf6N2E2_5665 at 6477.598 kb on + strand, within Pf6N2E2_5665 at 6477.599 kb on - strand, within Pf6N2E2_5665 at 6477.614 kb on - strand, within Pf6N2E2_5665 at 6477.614 kb on - strand, within Pf6N2E2_5665 at 6477.651 kb on - strand, within Pf6N2E2_5665 at 6477.676 kb on + strand, within Pf6N2E2_5665 at 6477.676 kb on + strand, within Pf6N2E2_5665 at 6477.676 kb on + strand, within Pf6N2E2_5665 at 6477.676 kb on + strand, within Pf6N2E2_5665 at 6477.698 kb on + strand, within Pf6N2E2_5665 at 6477.699 kb on - strand, within Pf6N2E2_5665 at 6477.699 kb on - strand, within Pf6N2E2_5665 at 6477.804 kb on - strand, within Pf6N2E2_5665 at 6477.902 kb on + strand, within Pf6N2E2_5665 at 6477.902 kb on + strand, within Pf6N2E2_5665 at 6477.903 kb on - strand, within Pf6N2E2_5665 at 6477.903 kb on - strand, within Pf6N2E2_5665 at 6477.903 kb on - strand, within Pf6N2E2_5665 at 6477.903 kb on - strand, within Pf6N2E2_5665 at 6477.903 kb on - strand, within Pf6N2E2_5665 at 6477.903 kb on - strand, within Pf6N2E2_5665 at 6477.903 kb on - strand, within Pf6N2E2_5665 at 6478.035 kb on - strand, within Pf6N2E2_5665 at 6478.167 kb on - strand, within Pf6N2E2_5665 at 6478.185 kb on + strand, within Pf6N2E2_5665 at 6478.186 kb on - strand, within Pf6N2E2_5665 at 6478.400 kb on + strand at 6478.401 kb on - strand at 6478.401 kb on - strand at 6478.401 kb on - strand at 6478.603 kb on + strand at 6478.629 kb on - strand at 6478.662 kb on + strand at 6478.695 kb on + strand at 6478.695 kb on + strand at 6478.696 kb on - strand at 6478.696 kb on - strand at 6478.696 kb on - strand at 6478.826 kb on + strand, within Pf6N2E2_5666 at 6478.827 kb on - strand, within Pf6N2E2_5666 at 6478.827 kb on - strand, within Pf6N2E2_5666 at 6478.913 kb on + strand, within Pf6N2E2_5666 at 6478.913 kb on + strand, within Pf6N2E2_5666 at 6478.914 kb on - strand, within Pf6N2E2_5666 at 6478.914 kb on - strand, within Pf6N2E2_5666 at 6479.030 kb on + strand, within Pf6N2E2_5666 at 6479.030 kb on + strand, within Pf6N2E2_5666 at 6479.030 kb on + strand, within Pf6N2E2_5666 at 6479.030 kb on + strand, within Pf6N2E2_5666 at 6479.031 kb on - strand, within Pf6N2E2_5666 at 6479.031 kb on - strand, within Pf6N2E2_5666 at 6479.031 kb on - strand, within Pf6N2E2_5666 at 6479.031 kb on - strand, within Pf6N2E2_5666 at 6479.217 kb on - strand, within Pf6N2E2_5666 at 6479.291 kb on + strand, within Pf6N2E2_5666 at 6479.291 kb on + strand, within Pf6N2E2_5666 at 6479.291 kb on + strand, within Pf6N2E2_5666 at 6479.291 kb on + strand, within Pf6N2E2_5666 at 6479.292 kb on - strand, within Pf6N2E2_5666 at 6479.295 kb on + strand, within Pf6N2E2_5666 at 6479.399 kb on + strand, within Pf6N2E2_5666 at 6479.399 kb on + strand, within Pf6N2E2_5666 at 6479.399 kb on + strand, within Pf6N2E2_5666 at 6479.399 kb on + strand, within Pf6N2E2_5666
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 6,476,210 + Pf6N2E2_5664 0.43 +1.0 6,476,497 + Pf6N2E2_5664 0.72 +0.0 6,476,498 - Pf6N2E2_5664 0.72 +1.0 6,476,532 + Pf6N2E2_5664 0.76 -0.6 6,476,533 - Pf6N2E2_5664 0.76 +0.0 6,476,533 - Pf6N2E2_5664 0.76 +0.0 6,476,533 - Pf6N2E2_5664 0.76 +0.0 6,476,556 + Pf6N2E2_5664 0.78 +1.0 6,476,556 + Pf6N2E2_5664 0.78 +1.0 6,476,556 + Pf6N2E2_5664 0.78 +1.0 6,476,557 - Pf6N2E2_5664 0.78 +1.0 6,476,557 - Pf6N2E2_5664 0.78 +1.0 6,476,559 + Pf6N2E2_5664 0.78 +1.0 6,476,560 - Pf6N2E2_5664 0.78 +1.0 6,476,560 - Pf6N2E2_5664 0.78 +0.0 6,476,802 + +1.0 6,476,802 + +1.0 6,476,803 - +0.0 6,476,976 + +0.6 6,476,976 + +1.0 6,476,976 + +0.7 6,476,976 + -0.6 6,476,976 + +1.0 6,476,976 + +0.0 6,476,976 + +1.0 6,476,977 - -0.8 6,476,977 - -0.6 6,477,034 - +1.0 6,477,051 - +1.0 6,477,081 - +0.0 6,477,081 - +0.0 6,477,081 - +0.0 6,477,125 + +1.4 6,477,125 + +0.6 6,477,126 - -6.2 6,477,126 - -6.7 6,477,126 - +1.0 6,477,134 + -2.3 6,477,205 - +1.0 6,477,242 + -1.3 6,477,242 + +0.0 6,477,242 + +0.0 6,477,242 + +0.0 6,477,242 + -1.0 6,477,242 + +1.0 6,477,242 + -1.8 6,477,242 + -5.5 6,477,242 + -6.1 6,477,242 + +0.0 6,477,243 - -1.0 6,477,243 - -3.5 6,477,243 - -4.5 6,477,243 - -4.8 6,477,243 - -1.3 6,477,243 - +0.0 6,477,243 - -0.6 6,477,243 - -5.0 6,477,243 - +0.0 6,477,243 - +0.0 6,477,420 + Pf6N2E2_5665 0.19 +1.0 6,477,421 - Pf6N2E2_5665 0.20 +1.0 6,477,421 - Pf6N2E2_5665 0.20 +1.0 6,477,421 - Pf6N2E2_5665 0.20 +1.0 6,477,454 + Pf6N2E2_5665 0.22 -2.2 6,477,454 + Pf6N2E2_5665 0.22 +0.0 6,477,455 - Pf6N2E2_5665 0.22 +0.0 6,477,455 - Pf6N2E2_5665 0.22 +1.0 6,477,575 + Pf6N2E2_5665 0.32 -2.8 6,477,575 + Pf6N2E2_5665 0.32 -1.0 6,477,575 + Pf6N2E2_5665 0.32 -2.2 6,477,598 + Pf6N2E2_5665 0.34 -5.3 6,477,598 + Pf6N2E2_5665 0.34 +1.0 6,477,599 - Pf6N2E2_5665 0.34 -0.6 6,477,614 - Pf6N2E2_5665 0.35 -8.0 6,477,614 - Pf6N2E2_5665 0.35 +1.0 6,477,651 - Pf6N2E2_5665 0.38 +1.0 6,477,676 + Pf6N2E2_5665 0.40 -0.6 6,477,676 + Pf6N2E2_5665 0.40 +1.0 6,477,676 + Pf6N2E2_5665 0.40 +0.0 6,477,676 + Pf6N2E2_5665 0.40 -4.4 6,477,698 + Pf6N2E2_5665 0.42 +1.0 6,477,699 - Pf6N2E2_5665 0.42 +1.0 6,477,699 - Pf6N2E2_5665 0.42 -2.6 6,477,804 - Pf6N2E2_5665 0.51 +1.0 6,477,902 + Pf6N2E2_5665 0.59 -1.6 6,477,902 + Pf6N2E2_5665 0.59 +1.0 6,477,903 - Pf6N2E2_5665 0.59 -0.6 6,477,903 - Pf6N2E2_5665 0.59 +1.0 6,477,903 - Pf6N2E2_5665 0.59 +1.0 6,477,903 - Pf6N2E2_5665 0.59 -0.6 6,477,903 - Pf6N2E2_5665 0.59 +1.0 6,477,903 - Pf6N2E2_5665 0.59 +1.0 6,477,903 - Pf6N2E2_5665 0.59 -1.0 6,478,035 - Pf6N2E2_5665 0.70 +1.0 6,478,167 - Pf6N2E2_5665 0.81 +1.0 6,478,185 + Pf6N2E2_5665 0.82 +1.0 6,478,186 - Pf6N2E2_5665 0.82 +1.0 6,478,400 + +0.0 6,478,401 - +1.0 6,478,401 - +1.0 6,478,401 - -4.6 6,478,603 + +0.0 6,478,629 - +1.0 6,478,662 + +1.0 6,478,695 + +0.0 6,478,695 + +1.0 6,478,696 - +1.0 6,478,696 - -2.3 6,478,696 - +1.0 6,478,826 + Pf6N2E2_5666 0.17 +0.0 6,478,827 - Pf6N2E2_5666 0.17 +0.0 6,478,827 - Pf6N2E2_5666 0.17 +1.0 6,478,913 + Pf6N2E2_5666 0.26 +0.0 6,478,913 + Pf6N2E2_5666 0.26 +1.0 6,478,914 - Pf6N2E2_5666 0.26 +0.0 6,478,914 - Pf6N2E2_5666 0.26 +0.0 6,479,030 + Pf6N2E2_5666 0.37 +1.0 6,479,030 + Pf6N2E2_5666 0.37 +1.0 6,479,030 + Pf6N2E2_5666 0.37 +1.0 6,479,030 + Pf6N2E2_5666 0.37 +0.0 6,479,031 - Pf6N2E2_5666 0.37 +1.0 6,479,031 - Pf6N2E2_5666 0.37 +1.0 6,479,031 - Pf6N2E2_5666 0.37 -1.3 6,479,031 - Pf6N2E2_5666 0.37 +1.0 6,479,217 - Pf6N2E2_5666 0.55 +1.0 6,479,291 + Pf6N2E2_5666 0.63 -1.0 6,479,291 + Pf6N2E2_5666 0.63 +1.0 6,479,291 + Pf6N2E2_5666 0.63 -4.3 6,479,291 + Pf6N2E2_5666 0.63 -0.6 6,479,292 - Pf6N2E2_5666 0.63 -0.6 6,479,295 + Pf6N2E2_5666 0.63 -3.0 6,479,399 + Pf6N2E2_5666 0.73 -3.2 6,479,399 + Pf6N2E2_5666 0.73 -4.5 6,479,399 + Pf6N2E2_5666 0.73 -3.3 6,479,399 + Pf6N2E2_5666 0.73 +0.0
Or see this region's nucleotide sequence