Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3857

Experiment: Ying_Others16 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3855 and Pf6N2E2_3856 are separated by 13 nucleotidesPf6N2E2_3856 and Pf6N2E2_3857 are separated by 78 nucleotidesPf6N2E2_3857 and Pf6N2E2_3858 overlap by 4 nucleotidesPf6N2E2_3858 and Pf6N2E2_3859 overlap by 20 nucleotides Pf6N2E2_3855 - Histidine ABC transporter, ATP-binding protein HisP (TC 3.A.1.3.1), at 4,487,517 to 4,488,290 _3855 Pf6N2E2_3856 - Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1), at 4,488,304 to 4,489,059 _3856 Pf6N2E2_3857 - Arginine ABC transporter, permease protein ArtQ, at 4,489,138 to 4,489,833 _3857 Pf6N2E2_3858 - Amino acid ABC transporter, permease protein, at 4,489,830 to 4,490,519 _3858 Pf6N2E2_3859 - SAM-dependent methyltransferases, at 4,490,500 to 4,491,753 _3859 Position (kb) 4489 4490Strain fitness (log2 ratio) -1 0 1 2at 4488.299 kb on + strandat 4488.299 kb on + strandat 4488.300 kb on - strandat 4488.300 kb on - strandat 4488.300 kb on - strandat 4488.300 kb on - strandat 4488.300 kb on - strandat 4488.300 kb on - strandat 4488.300 kb on - strandat 4488.300 kb on - strandat 4488.300 kb on - strandat 4488.300 kb on - strandat 4488.300 kb on - strandat 4488.300 kb on - strandat 4488.313 kb on + strandat 4488.313 kb on + strandat 4488.313 kb on + strandat 4488.313 kb on + strandat 4488.314 kb on - strandat 4488.314 kb on - strandat 4488.314 kb on - strandat 4488.314 kb on - strandat 4488.628 kb on + strand, within Pf6N2E2_3856at 4488.628 kb on + strand, within Pf6N2E2_3856at 4488.629 kb on - strand, within Pf6N2E2_3856at 4488.724 kb on - strand, within Pf6N2E2_3856at 4488.781 kb on + strand, within Pf6N2E2_3856at 4488.782 kb on - strand, within Pf6N2E2_3856at 4488.850 kb on + strand, within Pf6N2E2_3856at 4488.850 kb on + strand, within Pf6N2E2_3856at 4488.851 kb on - strand, within Pf6N2E2_3856at 4488.851 kb on - strand, within Pf6N2E2_3856at 4488.851 kb on - strand, within Pf6N2E2_3856at 4488.851 kb on - strand, within Pf6N2E2_3856at 4488.851 kb on - strand, within Pf6N2E2_3856at 4488.859 kb on + strand, within Pf6N2E2_3856at 4488.859 kb on + strand, within Pf6N2E2_3856at 4488.859 kb on + strand, within Pf6N2E2_3856at 4488.860 kb on - strand, within Pf6N2E2_3856at 4488.893 kb on - strand, within Pf6N2E2_3856at 4489.011 kb on + strandat 4489.012 kb on - strandat 4489.012 kb on - strandat 4489.012 kb on - strandat 4489.015 kb on + strandat 4489.015 kb on + strandat 4489.015 kb on + strandat 4489.016 kb on - strandat 4489.016 kb on - strandat 4489.016 kb on - strandat 4489.017 kb on + strandat 4489.017 kb on + strandat 4489.017 kb on + strandat 4489.036 kb on + strandat 4489.050 kb on + strandat 4489.050 kb on + strandat 4489.054 kb on + strandat 4489.054 kb on + strandat 4489.054 kb on + strandat 4489.054 kb on + strandat 4489.054 kb on + strandat 4489.054 kb on + strandat 4489.054 kb on + strandat 4489.054 kb on + strandat 4489.054 kb on + strandat 4489.054 kb on + strandat 4489.054 kb on + strandat 4489.054 kb on + strandat 4489.055 kb on - strandat 4489.055 kb on - strandat 4489.055 kb on - strandat 4489.055 kb on - strandat 4489.055 kb on - strandat 4489.055 kb on - strandat 4489.055 kb on - strandat 4489.060 kb on + strandat 4489.060 kb on + strandat 4489.061 kb on - strandat 4489.124 kb on - strandat 4489.270 kb on + strand, within Pf6N2E2_3857at 4489.270 kb on + strand, within Pf6N2E2_3857at 4489.300 kb on + strand, within Pf6N2E2_3857at 4489.300 kb on + strand, within Pf6N2E2_3857at 4489.300 kb on + strand, within Pf6N2E2_3857at 4489.301 kb on - strand, within Pf6N2E2_3857at 4489.351 kb on + strand, within Pf6N2E2_3857at 4489.351 kb on + strand, within Pf6N2E2_3857at 4489.351 kb on + strand, within Pf6N2E2_3857at 4489.351 kb on + strand, within Pf6N2E2_3857at 4489.352 kb on - strand, within Pf6N2E2_3857at 4489.352 kb on - strand, within Pf6N2E2_3857at 4489.352 kb on - strand, within Pf6N2E2_3857at 4489.465 kb on + strand, within Pf6N2E2_3857at 4489.726 kb on + strand, within Pf6N2E2_3857at 4489.726 kb on + strand, within Pf6N2E2_3857at 4489.726 kb on + strand, within Pf6N2E2_3857at 4489.726 kb on + strand, within Pf6N2E2_3857at 4489.726 kb on + strand, within Pf6N2E2_3857at 4489.726 kb on + strand, within Pf6N2E2_3857at 4489.726 kb on + strand, within Pf6N2E2_3857at 4489.726 kb on + strand, within Pf6N2E2_3857at 4489.726 kb on + strand, within Pf6N2E2_3857at 4489.726 kb on + strand, within Pf6N2E2_3857at 4489.726 kb on + strand, within Pf6N2E2_3857at 4489.726 kb on + strand, within Pf6N2E2_3857at 4489.726 kb on + strand, within Pf6N2E2_3857at 4489.726 kb on + strand, within Pf6N2E2_3857at 4489.726 kb on + strand, within Pf6N2E2_3857at 4489.727 kb on - strand, within Pf6N2E2_3857at 4489.727 kb on - strand, within Pf6N2E2_3857at 4489.727 kb on - strand, within Pf6N2E2_3857at 4489.727 kb on - strand, within Pf6N2E2_3857at 4489.727 kb on - strand, within Pf6N2E2_3857at 4489.727 kb on - strand, within Pf6N2E2_3857at 4489.727 kb on - strand, within Pf6N2E2_3857at 4489.727 kb on - strand, within Pf6N2E2_3857at 4489.727 kb on - strand, within Pf6N2E2_3857at 4489.727 kb on - strand, within Pf6N2E2_3857at 4489.727 kb on - strand, within Pf6N2E2_3857at 4489.727 kb on - strand, within Pf6N2E2_3857at 4489.727 kb on - strand, within Pf6N2E2_3857at 4489.727 kb on - strand, within Pf6N2E2_3857at 4489.727 kb on - strand, within Pf6N2E2_3857at 4489.727 kb on - strand, within Pf6N2E2_3857at 4489.727 kb on - strand, within Pf6N2E2_3857at 4489.729 kb on - strand, within Pf6N2E2_3857at 4489.729 kb on - strand, within Pf6N2E2_3857at 4489.747 kb on + strand, within Pf6N2E2_3857at 4489.747 kb on + strand, within Pf6N2E2_3857at 4489.748 kb on - strand, within Pf6N2E2_3857at 4489.748 kb on - strand, within Pf6N2E2_3857at 4489.748 kb on - strand, within Pf6N2E2_3857at 4489.748 kb on - strand, within Pf6N2E2_3857at 4489.824 kb on + strandat 4489.989 kb on + strand, within Pf6N2E2_3858at 4489.990 kb on - strand, within Pf6N2E2_3858at 4489.995 kb on + strand, within Pf6N2E2_3858at 4489.995 kb on + strand, within Pf6N2E2_3858at 4489.995 kb on + strand, within Pf6N2E2_3858at 4489.995 kb on + strand, within Pf6N2E2_3858at 4489.995 kb on + strand, within Pf6N2E2_3858at 4489.995 kb on + strand, within Pf6N2E2_3858at 4489.995 kb on + strand, within Pf6N2E2_3858at 4489.995 kb on + strand, within Pf6N2E2_3858at 4489.995 kb on + strand, within Pf6N2E2_3858at 4489.995 kb on + strand, within Pf6N2E2_3858at 4489.996 kb on - strand, within Pf6N2E2_3858at 4489.996 kb on - strand, within Pf6N2E2_3858at 4489.996 kb on - strand, within Pf6N2E2_3858at 4489.996 kb on - strand, within Pf6N2E2_3858at 4489.996 kb on - strand, within Pf6N2E2_3858at 4489.996 kb on - strand, within Pf6N2E2_3858at 4489.996 kb on - strand, within Pf6N2E2_3858at 4489.996 kb on - strand, within Pf6N2E2_3858at 4489.996 kb on - strand, within Pf6N2E2_3858at 4489.996 kb on - strand, within Pf6N2E2_3858at 4489.996 kb on - strand, within Pf6N2E2_3858at 4489.996 kb on - strand, within Pf6N2E2_3858at 4489.996 kb on - strand, within Pf6N2E2_3858at 4489.996 kb on - strand, within Pf6N2E2_3858at 4490.046 kb on + strand, within Pf6N2E2_3858at 4490.046 kb on + strand, within Pf6N2E2_3858at 4490.047 kb on - strand, within Pf6N2E2_3858at 4490.050 kb on - strand, within Pf6N2E2_3858at 4490.050 kb on - strand, within Pf6N2E2_3858at 4490.154 kb on + strand, within Pf6N2E2_3858at 4490.154 kb on + strand, within Pf6N2E2_3858at 4490.154 kb on + strand, within Pf6N2E2_3858at 4490.154 kb on + strand, within Pf6N2E2_3858at 4490.155 kb on - strand, within Pf6N2E2_3858at 4490.155 kb on - strand, within Pf6N2E2_3858at 4490.155 kb on - strand, within Pf6N2E2_3858at 4490.155 kb on - strand, within Pf6N2E2_3858at 4490.253 kb on + strand, within Pf6N2E2_3858at 4490.253 kb on + strand, within Pf6N2E2_3858at 4490.253 kb on + strand, within Pf6N2E2_3858at 4490.253 kb on + strand, within Pf6N2E2_3858at 4490.253 kb on + strand, within Pf6N2E2_3858at 4490.253 kb on + strand, within Pf6N2E2_3858at 4490.254 kb on - strand, within Pf6N2E2_3858at 4490.254 kb on - strand, within Pf6N2E2_3858at 4490.254 kb on - strand, within Pf6N2E2_3858at 4490.254 kb on - strand, within Pf6N2E2_3858at 4490.397 kb on + strand, within Pf6N2E2_3858at 4490.397 kb on + strand, within Pf6N2E2_3858at 4490.398 kb on - strand, within Pf6N2E2_3858at 4490.436 kb on + strand, within Pf6N2E2_3858at 4490.436 kb on + strand, within Pf6N2E2_3858at 4490.436 kb on + strand, within Pf6N2E2_3858at 4490.437 kb on - strand, within Pf6N2E2_3858at 4490.437 kb on - strand, within Pf6N2E2_3858at 4490.437 kb on - strand, within Pf6N2E2_3858at 4490.437 kb on - strand, within Pf6N2E2_3858at 4490.451 kb on + strandat 4490.451 kb on + strandat 4490.452 kb on - strandat 4490.452 kb on - strandat 4490.455 kb on + strandat 4490.455 kb on + strandat 4490.456 kb on - strandat 4490.456 kb on - strandat 4490.456 kb on - strandat 4490.456 kb on - strandat 4490.456 kb on - strandat 4490.456 kb on - strandat 4490.456 kb on - strandat 4490.572 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2
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4,488,299 + +1.2
4,488,299 + +0.2
4,488,300 - +0.7
4,488,300 - +0.6
4,488,300 - +0.2
4,488,300 - +0.6
4,488,300 - +1.2
4,488,300 - +0.3
4,488,300 - +0.2
4,488,300 - +1.2
4,488,300 - +0.4
4,488,300 - +0.0
4,488,300 - -0.3
4,488,300 - +1.2
4,488,313 + +1.2
4,488,313 + +0.4
4,488,313 + +0.8
4,488,313 + +0.4
4,488,314 - +0.4
4,488,314 - -0.4
4,488,314 - +0.6
4,488,314 - +1.2
4,488,628 + Pf6N2E2_3856 0.43 +1.5
4,488,628 + Pf6N2E2_3856 0.43 +0.5
4,488,629 - Pf6N2E2_3856 0.43 +1.2
4,488,724 - Pf6N2E2_3856 0.56 +1.2
4,488,781 + Pf6N2E2_3856 0.63 +1.2
4,488,782 - Pf6N2E2_3856 0.63 +0.5
4,488,850 + Pf6N2E2_3856 0.72 +0.2
4,488,850 + Pf6N2E2_3856 0.72 +0.9
4,488,851 - Pf6N2E2_3856 0.72 +1.5
4,488,851 - Pf6N2E2_3856 0.72 -1.2
4,488,851 - Pf6N2E2_3856 0.72 +0.6
4,488,851 - Pf6N2E2_3856 0.72 +1.2
4,488,851 - Pf6N2E2_3856 0.72 +1.5
4,488,859 + Pf6N2E2_3856 0.73 +1.9
4,488,859 + Pf6N2E2_3856 0.73 +1.7
4,488,859 + Pf6N2E2_3856 0.73 +1.2
4,488,860 - Pf6N2E2_3856 0.74 +0.5
4,488,893 - Pf6N2E2_3856 0.78 +0.2
4,489,011 + -0.4
4,489,012 - +0.2
4,489,012 - +0.2
4,489,012 - +0.2
4,489,015 + +1.2
4,489,015 + +0.0
4,489,015 + +0.6
4,489,016 - +0.5
4,489,016 - +0.3
4,489,016 - +0.3
4,489,017 + +1.2
4,489,017 + -0.8
4,489,017 + +1.2
4,489,036 + +1.7
4,489,050 + -0.2
4,489,050 + +1.2
4,489,054 + +1.2
4,489,054 + +0.2
4,489,054 + -0.8
4,489,054 + -0.4
4,489,054 + +0.2
4,489,054 + -0.4
4,489,054 + -1.2
4,489,054 + +0.4
4,489,054 + -0.8
4,489,054 + -0.4
4,489,054 + -0.4
4,489,054 + +2.2
4,489,055 - +0.6
4,489,055 - -0.2
4,489,055 - +1.3
4,489,055 - +1.2
4,489,055 - -0.2
4,489,055 - +1.2
4,489,055 - +0.2
4,489,060 + +0.2
4,489,060 + +1.2
4,489,061 - +0.5
4,489,124 - -0.4
4,489,270 + Pf6N2E2_3857 0.19 +0.2
4,489,270 + Pf6N2E2_3857 0.19 +1.2
4,489,300 + Pf6N2E2_3857 0.23 +0.7
4,489,300 + Pf6N2E2_3857 0.23 -0.4
4,489,300 + Pf6N2E2_3857 0.23 +1.2
4,489,301 - Pf6N2E2_3857 0.23 +0.2
4,489,351 + Pf6N2E2_3857 0.31 +1.2
4,489,351 + Pf6N2E2_3857 0.31 +0.2
4,489,351 + Pf6N2E2_3857 0.31 +1.2
4,489,351 + Pf6N2E2_3857 0.31 +0.2
4,489,352 - Pf6N2E2_3857 0.31 +0.3
4,489,352 - Pf6N2E2_3857 0.31 +1.2
4,489,352 - Pf6N2E2_3857 0.31 -0.4
4,489,465 + Pf6N2E2_3857 0.47 -0.2
4,489,726 + Pf6N2E2_3857 0.84 +0.6
4,489,726 + Pf6N2E2_3857 0.84 +1.2
4,489,726 + Pf6N2E2_3857 0.84 +1.2
4,489,726 + Pf6N2E2_3857 0.84 +0.2
4,489,726 + Pf6N2E2_3857 0.84 +1.2
4,489,726 + Pf6N2E2_3857 0.84 -0.8
4,489,726 + Pf6N2E2_3857 0.84 +1.2
4,489,726 + Pf6N2E2_3857 0.84 +0.8
4,489,726 + Pf6N2E2_3857 0.84 +1.2
4,489,726 + Pf6N2E2_3857 0.84 +0.2
4,489,726 + Pf6N2E2_3857 0.84 +1.2
4,489,726 + Pf6N2E2_3857 0.84 +0.5
4,489,726 + Pf6N2E2_3857 0.84 +0.6
4,489,726 + Pf6N2E2_3857 0.84 -1.5
4,489,726 + Pf6N2E2_3857 0.84 -1.5
4,489,727 - Pf6N2E2_3857 0.85 +0.0
4,489,727 - Pf6N2E2_3857 0.85 +1.2
4,489,727 - Pf6N2E2_3857 0.85 +1.2
4,489,727 - Pf6N2E2_3857 0.85 +0.1
4,489,727 - Pf6N2E2_3857 0.85 +0.2
4,489,727 - Pf6N2E2_3857 0.85 +0.4
4,489,727 - Pf6N2E2_3857 0.85 +1.2
4,489,727 - Pf6N2E2_3857 0.85 +0.4
4,489,727 - Pf6N2E2_3857 0.85 +1.2
4,489,727 - Pf6N2E2_3857 0.85 +1.2
4,489,727 - Pf6N2E2_3857 0.85 -0.4
4,489,727 - Pf6N2E2_3857 0.85 +1.2
4,489,727 - Pf6N2E2_3857 0.85 +0.2
4,489,727 - Pf6N2E2_3857 0.85 +1.2
4,489,727 - Pf6N2E2_3857 0.85 +1.2
4,489,727 - Pf6N2E2_3857 0.85 -0.4
4,489,727 - Pf6N2E2_3857 0.85 -0.4
4,489,729 - Pf6N2E2_3857 0.85 +1.2
4,489,729 - Pf6N2E2_3857 0.85 -1.0
4,489,747 + Pf6N2E2_3857 0.88 +1.2
4,489,747 + Pf6N2E2_3857 0.88 +1.2
4,489,748 - Pf6N2E2_3857 0.88 +0.6
4,489,748 - Pf6N2E2_3857 0.88 +0.2
4,489,748 - Pf6N2E2_3857 0.88 +0.2
4,489,748 - Pf6N2E2_3857 0.88 -0.4
4,489,824 + -0.8
4,489,989 + Pf6N2E2_3858 0.23 +0.4
4,489,990 - Pf6N2E2_3858 0.23 +0.7
4,489,995 + Pf6N2E2_3858 0.24 +1.2
4,489,995 + Pf6N2E2_3858 0.24 +0.2
4,489,995 + Pf6N2E2_3858 0.24 -0.1
4,489,995 + Pf6N2E2_3858 0.24 +1.2
4,489,995 + Pf6N2E2_3858 0.24 +1.2
4,489,995 + Pf6N2E2_3858 0.24 +0.2
4,489,995 + Pf6N2E2_3858 0.24 +0.2
4,489,995 + Pf6N2E2_3858 0.24 +1.2
4,489,995 + Pf6N2E2_3858 0.24 +1.2
4,489,995 + Pf6N2E2_3858 0.24 +1.2
4,489,996 - Pf6N2E2_3858 0.24 -0.4
4,489,996 - Pf6N2E2_3858 0.24 +0.7
4,489,996 - Pf6N2E2_3858 0.24 +0.2
4,489,996 - Pf6N2E2_3858 0.24 -0.0
4,489,996 - Pf6N2E2_3858 0.24 -0.3
4,489,996 - Pf6N2E2_3858 0.24 -0.3
4,489,996 - Pf6N2E2_3858 0.24 +0.4
4,489,996 - Pf6N2E2_3858 0.24 -0.8
4,489,996 - Pf6N2E2_3858 0.24 +1.2
4,489,996 - Pf6N2E2_3858 0.24 -0.4
4,489,996 - Pf6N2E2_3858 0.24 +0.5
4,489,996 - Pf6N2E2_3858 0.24 +0.2
4,489,996 - Pf6N2E2_3858 0.24 +0.2
4,489,996 - Pf6N2E2_3858 0.24 +0.2
4,490,046 + Pf6N2E2_3858 0.31 +1.2
4,490,046 + Pf6N2E2_3858 0.31 +0.8
4,490,047 - Pf6N2E2_3858 0.31 +0.2
4,490,050 - Pf6N2E2_3858 0.32 +0.1
4,490,050 - Pf6N2E2_3858 0.32 -0.8
4,490,154 + Pf6N2E2_3858 0.47 +0.2
4,490,154 + Pf6N2E2_3858 0.47 +0.2
4,490,154 + Pf6N2E2_3858 0.47 +0.3
4,490,154 + Pf6N2E2_3858 0.47 -0.4
4,490,155 - Pf6N2E2_3858 0.47 -0.4
4,490,155 - Pf6N2E2_3858 0.47 +1.2
4,490,155 - Pf6N2E2_3858 0.47 +0.6
4,490,155 - Pf6N2E2_3858 0.47 +1.2
4,490,253 + Pf6N2E2_3858 0.61 +1.2
4,490,253 + Pf6N2E2_3858 0.61 +0.2
4,490,253 + Pf6N2E2_3858 0.61 -0.9
4,490,253 + Pf6N2E2_3858 0.61 -0.3
4,490,253 + Pf6N2E2_3858 0.61 +0.2
4,490,253 + Pf6N2E2_3858 0.61 -0.4
4,490,254 - Pf6N2E2_3858 0.61 -0.4
4,490,254 - Pf6N2E2_3858 0.61 -1.2
4,490,254 - Pf6N2E2_3858 0.61 -0.8
4,490,254 - Pf6N2E2_3858 0.61 +0.2
4,490,397 + Pf6N2E2_3858 0.82 +1.2
4,490,397 + Pf6N2E2_3858 0.82 -0.2
4,490,398 - Pf6N2E2_3858 0.82 -0.4
4,490,436 + Pf6N2E2_3858 0.88 -0.4
4,490,436 + Pf6N2E2_3858 0.88 -0.8
4,490,436 + Pf6N2E2_3858 0.88 -0.4
4,490,437 - Pf6N2E2_3858 0.88 +0.5
4,490,437 - Pf6N2E2_3858 0.88 +0.3
4,490,437 - Pf6N2E2_3858 0.88 +1.2
4,490,437 - Pf6N2E2_3858 0.88 +1.2
4,490,451 + +2.7
4,490,451 + +0.7
4,490,452 - +1.2
4,490,452 - +0.2
4,490,455 + +0.3
4,490,455 + +0.4
4,490,456 - +1.2
4,490,456 - +1.2
4,490,456 - +0.3
4,490,456 - +0.2
4,490,456 - +0.1
4,490,456 - -0.4
4,490,456 - -0.0
4,490,572 - +1.2

Or see this region's nucleotide sequence