Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2957 and Pf6N2E2_2958 are separated by 362 nucleotides Pf6N2E2_2958 and Pf6N2E2_2959 are separated by 58 nucleotides Pf6N2E2_2959 and Pf6N2E2_2960 overlap by 4 nucleotides
Pf6N2E2_2957 - ATP-dependent DNA ligase (EC 6.5.1.1) LigC, at 3,448,001 to 3,449,689
_2957
Pf6N2E2_2958 - ABC transporter for L-Lysine, periplasmic substrate-binding component (from data) , at 3,450,052 to 3,450,834
_2958
Pf6N2E2_2959 - ABC transporter for L-Lysine, permease component 1 (from data) , at 3,450,893 to 3,451,621
_2959
Pf6N2E2_2960 - ABC transporter for L-Lysine, permease component 2 (from data) , at 3,451,618 to 3,452,328
_2960
Position (kb)
3450
3451 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 3449.243 kb on + strand, within Pf6N2E2_2957 at 3449.324 kb on + strand, within Pf6N2E2_2957 at 3449.325 kb on - strand, within Pf6N2E2_2957 at 3449.325 kb on - strand, within Pf6N2E2_2957 at 3449.361 kb on - strand, within Pf6N2E2_2957 at 3449.370 kb on - strand, within Pf6N2E2_2957 at 3449.438 kb on + strand, within Pf6N2E2_2957 at 3449.439 kb on - strand, within Pf6N2E2_2957 at 3449.636 kb on - strand at 3449.656 kb on + strand at 3449.657 kb on - strand at 3449.657 kb on - strand at 3449.657 kb on - strand at 3449.657 kb on - strand at 3449.657 kb on - strand at 3449.687 kb on + strand at 3449.687 kb on + strand at 3449.687 kb on + strand at 3449.876 kb on + strand at 3449.876 kb on + strand at 3449.876 kb on + strand at 3449.877 kb on - strand at 3449.877 kb on - strand at 3449.877 kb on - strand at 3449.877 kb on - strand at 3449.877 kb on - strand at 3449.877 kb on - strand at 3449.877 kb on - strand at 3449.877 kb on - strand at 3449.877 kb on - strand at 3449.877 kb on - strand at 3449.877 kb on - strand at 3449.965 kb on - strand at 3449.970 kb on + strand at 3449.970 kb on + strand at 3449.970 kb on + strand at 3449.980 kb on + strand at 3449.981 kb on - strand at 3450.007 kb on + strand at 3450.007 kb on + strand at 3450.007 kb on + strand at 3450.007 kb on + strand at 3450.007 kb on + strand at 3450.007 kb on + strand at 3450.007 kb on + strand at 3450.008 kb on - strand at 3450.008 kb on - strand at 3450.008 kb on - strand at 3450.008 kb on - strand at 3450.008 kb on - strand at 3450.008 kb on - strand at 3450.011 kb on + strand at 3450.012 kb on - strand at 3450.012 kb on - strand at 3450.031 kb on - strand at 3450.031 kb on - strand at 3450.039 kb on + strand at 3450.050 kb on + strand at 3450.124 kb on + strand at 3450.124 kb on + strand at 3450.124 kb on + strand at 3450.124 kb on + strand at 3450.124 kb on + strand at 3450.124 kb on + strand at 3450.125 kb on - strand at 3450.125 kb on - strand at 3450.158 kb on - strand, within Pf6N2E2_2958 at 3450.303 kb on + strand, within Pf6N2E2_2958 at 3450.303 kb on + strand, within Pf6N2E2_2958 at 3450.397 kb on + strand, within Pf6N2E2_2958 at 3450.397 kb on + strand, within Pf6N2E2_2958 at 3450.397 kb on + strand, within Pf6N2E2_2958 at 3450.397 kb on + strand, within Pf6N2E2_2958 at 3450.397 kb on + strand, within Pf6N2E2_2958 at 3450.397 kb on + strand, within Pf6N2E2_2958 at 3450.397 kb on + strand, within Pf6N2E2_2958 at 3450.398 kb on - strand, within Pf6N2E2_2958 at 3450.398 kb on - strand, within Pf6N2E2_2958 at 3450.490 kb on + strand, within Pf6N2E2_2958 at 3450.490 kb on + strand, within Pf6N2E2_2958 at 3450.491 kb on - strand, within Pf6N2E2_2958 at 3450.556 kb on + strand, within Pf6N2E2_2958 at 3450.649 kb on + strand, within Pf6N2E2_2958 at 3450.717 kb on + strand, within Pf6N2E2_2958 at 3450.717 kb on + strand, within Pf6N2E2_2958 at 3450.718 kb on - strand, within Pf6N2E2_2958 at 3450.744 kb on + strand, within Pf6N2E2_2958 at 3450.745 kb on - strand, within Pf6N2E2_2958 at 3450.750 kb on + strand, within Pf6N2E2_2958 at 3450.750 kb on + strand, within Pf6N2E2_2958 at 3450.750 kb on + strand, within Pf6N2E2_2958 at 3450.751 kb on - strand, within Pf6N2E2_2958 at 3450.761 kb on + strand at 3450.778 kb on + strand at 3450.821 kb on - strand at 3450.832 kb on + strand at 3450.832 kb on + strand at 3450.833 kb on - strand at 3450.833 kb on - strand at 3450.833 kb on - strand at 3450.991 kb on - strand, within Pf6N2E2_2959 at 3450.999 kb on + strand, within Pf6N2E2_2959 at 3451.000 kb on - strand, within Pf6N2E2_2959 at 3451.000 kb on - strand, within Pf6N2E2_2959 at 3451.088 kb on + strand, within Pf6N2E2_2959 at 3451.088 kb on + strand, within Pf6N2E2_2959 at 3451.088 kb on + strand, within Pf6N2E2_2959 at 3451.088 kb on + strand, within Pf6N2E2_2959 at 3451.089 kb on - strand, within Pf6N2E2_2959 at 3451.142 kb on + strand, within Pf6N2E2_2959 at 3451.143 kb on - strand, within Pf6N2E2_2959 at 3451.143 kb on - strand, within Pf6N2E2_2959 at 3451.194 kb on - strand, within Pf6N2E2_2959 at 3451.194 kb on - strand, within Pf6N2E2_2959 at 3451.194 kb on - strand, within Pf6N2E2_2959 at 3451.244 kb on + strand, within Pf6N2E2_2959 at 3451.244 kb on + strand, within Pf6N2E2_2959 at 3451.244 kb on + strand, within Pf6N2E2_2959 at 3451.244 kb on + strand, within Pf6N2E2_2959 at 3451.245 kb on - strand, within Pf6N2E2_2959 at 3451.245 kb on - strand, within Pf6N2E2_2959 at 3451.253 kb on + strand, within Pf6N2E2_2959 at 3451.254 kb on - strand, within Pf6N2E2_2959 at 3451.254 kb on - strand, within Pf6N2E2_2959 at 3451.496 kb on + strand, within Pf6N2E2_2959 at 3451.497 kb on - strand, within Pf6N2E2_2959 at 3451.497 kb on - strand, within Pf6N2E2_2959 at 3451.508 kb on + strand, within Pf6N2E2_2959 at 3451.535 kb on + strand, within Pf6N2E2_2959 at 3451.535 kb on + strand, within Pf6N2E2_2959 at 3451.535 kb on + strand, within Pf6N2E2_2959 at 3451.535 kb on + strand, within Pf6N2E2_2959 at 3451.536 kb on - strand, within Pf6N2E2_2959 at 3451.639 kb on + strand at 3451.639 kb on + strand at 3451.777 kb on + strand, within Pf6N2E2_2960 at 3451.777 kb on + strand, within Pf6N2E2_2960 at 3451.777 kb on + strand, within Pf6N2E2_2960 at 3451.778 kb on - strand, within Pf6N2E2_2960 at 3451.801 kb on + strand, within Pf6N2E2_2960 at 3451.801 kb on + strand, within Pf6N2E2_2960 at 3451.802 kb on - strand, within Pf6N2E2_2960 at 3451.802 kb on - strand, within Pf6N2E2_2960 at 3451.802 kb on - strand, within Pf6N2E2_2960 at 3451.802 kb on - strand, within Pf6N2E2_2960 at 3451.807 kb on + strand, within Pf6N2E2_2960 at 3451.807 kb on + strand, within Pf6N2E2_2960 at 3451.807 kb on + strand, within Pf6N2E2_2960 at 3451.807 kb on + strand, within Pf6N2E2_2960 at 3451.808 kb on - strand, within Pf6N2E2_2960 at 3451.808 kb on - strand, within Pf6N2E2_2960 at 3451.808 kb on - strand, within Pf6N2E2_2960 at 3451.808 kb on - strand, within Pf6N2E2_2960 at 3451.808 kb on - strand, within Pf6N2E2_2960 at 3451.808 kb on - strand, within Pf6N2E2_2960 at 3451.831 kb on + strand, within Pf6N2E2_2960 at 3451.831 kb on + strand, within Pf6N2E2_2960 at 3451.831 kb on + strand, within Pf6N2E2_2960 at 3451.831 kb on + strand, within Pf6N2E2_2960 at 3451.831 kb on + strand, within Pf6N2E2_2960 at 3451.832 kb on - strand, within Pf6N2E2_2960 at 3451.832 kb on - strand, within Pf6N2E2_2960 at 3451.832 kb on - strand, within Pf6N2E2_2960 at 3451.832 kb on - strand, within Pf6N2E2_2960 at 3451.832 kb on - strand, within Pf6N2E2_2960 at 3451.832 kb on - strand, within Pf6N2E2_2960 at 3451.832 kb on - strand, within Pf6N2E2_2960 at 3451.832 kb on - strand, within Pf6N2E2_2960 at 3451.832 kb on - strand, within Pf6N2E2_2960 at 3451.832 kb on - strand, within Pf6N2E2_2960
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 3,449,243 + Pf6N2E2_2957 0.74 +1.0 3,449,324 + Pf6N2E2_2957 0.78 +1.0 3,449,325 - Pf6N2E2_2957 0.78 +1.0 3,449,325 - Pf6N2E2_2957 0.78 +1.0 3,449,361 - Pf6N2E2_2957 0.81 +1.0 3,449,370 - Pf6N2E2_2957 0.81 +1.0 3,449,438 + Pf6N2E2_2957 0.85 -0.6 3,449,439 - Pf6N2E2_2957 0.85 -0.6 3,449,636 - +0.0 3,449,656 + +1.0 3,449,657 - +1.0 3,449,657 - +1.0 3,449,657 - -1.0 3,449,657 - +0.0 3,449,657 - +0.0 3,449,687 + +1.0 3,449,687 + -1.5 3,449,687 + -1.9 3,449,876 + +0.0 3,449,876 + +1.0 3,449,876 + +1.0 3,449,877 - +0.4 3,449,877 - +0.5 3,449,877 - -1.0 3,449,877 - +1.0 3,449,877 - +1.0 3,449,877 - +1.0 3,449,877 - +0.0 3,449,877 - -0.6 3,449,877 - -0.6 3,449,877 - +0.0 3,449,877 - -1.0 3,449,965 - -1.0 3,449,970 + +1.0 3,449,970 + +0.0 3,449,970 + -1.3 3,449,980 + -5.3 3,449,981 - -0.5 3,450,007 + -1.0 3,450,007 + -1.8 3,450,007 + +1.0 3,450,007 + -1.6 3,450,007 + +0.0 3,450,007 + +1.0 3,450,007 + +1.0 3,450,008 - +0.4 3,450,008 - +0.2 3,450,008 - +0.0 3,450,008 - +1.0 3,450,008 - +1.0 3,450,008 - +0.0 3,450,011 + -1.0 3,450,012 - +1.0 3,450,012 - +0.5 3,450,031 - -0.6 3,450,031 - -0.6 3,450,039 + +1.0 3,450,050 + +1.0 3,450,124 + +1.0 3,450,124 + +1.0 3,450,124 + -0.6 3,450,124 + +0.0 3,450,124 + +1.0 3,450,124 + +0.0 3,450,125 - -0.6 3,450,125 - -1.0 3,450,158 - Pf6N2E2_2958 0.14 -0.2 3,450,303 + Pf6N2E2_2958 0.32 +0.8 3,450,303 + Pf6N2E2_2958 0.32 -1.0 3,450,397 + Pf6N2E2_2958 0.44 -1.6 3,450,397 + Pf6N2E2_2958 0.44 +1.0 3,450,397 + Pf6N2E2_2958 0.44 -0.0 3,450,397 + Pf6N2E2_2958 0.44 -0.6 3,450,397 + Pf6N2E2_2958 0.44 -0.6 3,450,397 + Pf6N2E2_2958 0.44 +0.4 3,450,397 + Pf6N2E2_2958 0.44 +0.0 3,450,398 - Pf6N2E2_2958 0.44 +1.0 3,450,398 - Pf6N2E2_2958 0.44 +0.0 3,450,490 + Pf6N2E2_2958 0.56 +1.0 3,450,490 + Pf6N2E2_2958 0.56 +1.0 3,450,491 - Pf6N2E2_2958 0.56 -3.0 3,450,556 + Pf6N2E2_2958 0.64 +0.1 3,450,649 + Pf6N2E2_2958 0.76 +1.0 3,450,717 + Pf6N2E2_2958 0.85 +1.4 3,450,717 + Pf6N2E2_2958 0.85 +1.0 3,450,718 - Pf6N2E2_2958 0.85 +0.0 3,450,744 + Pf6N2E2_2958 0.88 -0.6 3,450,745 - Pf6N2E2_2958 0.89 +1.0 3,450,750 + Pf6N2E2_2958 0.89 +0.0 3,450,750 + Pf6N2E2_2958 0.89 +1.0 3,450,750 + Pf6N2E2_2958 0.89 -1.0 3,450,751 - Pf6N2E2_2958 0.89 +0.0 3,450,761 + +0.0 3,450,778 + +0.2 3,450,821 - +0.0 3,450,832 + +0.0 3,450,832 + +0.0 3,450,833 - +1.0 3,450,833 - +1.0 3,450,833 - +1.0 3,450,991 - Pf6N2E2_2959 0.13 -0.6 3,450,999 + Pf6N2E2_2959 0.15 +1.0 3,451,000 - Pf6N2E2_2959 0.15 -0.3 3,451,000 - Pf6N2E2_2959 0.15 +0.0 3,451,088 + Pf6N2E2_2959 0.27 +1.0 3,451,088 + Pf6N2E2_2959 0.27 -1.0 3,451,088 + Pf6N2E2_2959 0.27 +1.0 3,451,088 + Pf6N2E2_2959 0.27 +1.0 3,451,089 - Pf6N2E2_2959 0.27 +1.0 3,451,142 + Pf6N2E2_2959 0.34 +0.0 3,451,143 - Pf6N2E2_2959 0.34 +1.0 3,451,143 - Pf6N2E2_2959 0.34 -0.6 3,451,194 - Pf6N2E2_2959 0.41 -1.0 3,451,194 - Pf6N2E2_2959 0.41 +1.0 3,451,194 - Pf6N2E2_2959 0.41 +0.5 3,451,244 + Pf6N2E2_2959 0.48 +1.0 3,451,244 + Pf6N2E2_2959 0.48 -0.4 3,451,244 + Pf6N2E2_2959 0.48 +0.0 3,451,244 + Pf6N2E2_2959 0.48 +0.4 3,451,245 - Pf6N2E2_2959 0.48 +1.0 3,451,245 - Pf6N2E2_2959 0.48 -0.7 3,451,253 + Pf6N2E2_2959 0.49 +1.0 3,451,254 - Pf6N2E2_2959 0.50 +1.0 3,451,254 - Pf6N2E2_2959 0.50 -0.6 3,451,496 + Pf6N2E2_2959 0.83 +1.0 3,451,497 - Pf6N2E2_2959 0.83 -0.6 3,451,497 - Pf6N2E2_2959 0.83 +1.0 3,451,508 + Pf6N2E2_2959 0.84 +1.0 3,451,535 + Pf6N2E2_2959 0.88 -0.6 3,451,535 + Pf6N2E2_2959 0.88 +0.0 3,451,535 + Pf6N2E2_2959 0.88 +0.1 3,451,535 + Pf6N2E2_2959 0.88 +1.0 3,451,536 - Pf6N2E2_2959 0.88 +1.0 3,451,639 + -0.6 3,451,639 + +1.0 3,451,777 + Pf6N2E2_2960 0.22 +1.0 3,451,777 + Pf6N2E2_2960 0.22 +1.0 3,451,777 + Pf6N2E2_2960 0.22 +0.0 3,451,778 - Pf6N2E2_2960 0.23 +0.0 3,451,801 + Pf6N2E2_2960 0.26 -0.6 3,451,801 + Pf6N2E2_2960 0.26 +0.0 3,451,802 - Pf6N2E2_2960 0.26 +0.0 3,451,802 - Pf6N2E2_2960 0.26 +0.0 3,451,802 - Pf6N2E2_2960 0.26 +0.2 3,451,802 - Pf6N2E2_2960 0.26 +1.0 3,451,807 + Pf6N2E2_2960 0.27 +0.0 3,451,807 + Pf6N2E2_2960 0.27 +1.0 3,451,807 + Pf6N2E2_2960 0.27 -0.6 3,451,807 + Pf6N2E2_2960 0.27 -1.7 3,451,808 - Pf6N2E2_2960 0.27 -0.8 3,451,808 - Pf6N2E2_2960 0.27 +1.0 3,451,808 - Pf6N2E2_2960 0.27 +0.0 3,451,808 - Pf6N2E2_2960 0.27 -0.8 3,451,808 - Pf6N2E2_2960 0.27 +0.0 3,451,808 - Pf6N2E2_2960 0.27 -0.1 3,451,831 + Pf6N2E2_2960 0.30 +0.0 3,451,831 + Pf6N2E2_2960 0.30 +1.0 3,451,831 + Pf6N2E2_2960 0.30 +1.0 3,451,831 + Pf6N2E2_2960 0.30 +1.0 3,451,831 + Pf6N2E2_2960 0.30 -1.0 3,451,832 - Pf6N2E2_2960 0.30 -1.3 3,451,832 - Pf6N2E2_2960 0.30 +0.3 3,451,832 - Pf6N2E2_2960 0.30 +1.0 3,451,832 - Pf6N2E2_2960 0.30 -0.8 3,451,832 - Pf6N2E2_2960 0.30 +0.6 3,451,832 - Pf6N2E2_2960 0.30 +0.0 3,451,832 - Pf6N2E2_2960 0.30 +1.0 3,451,832 - Pf6N2E2_2960 0.30 +0.0 3,451,832 - Pf6N2E2_2960 0.30 +0.0 3,451,832 - Pf6N2E2_2960 0.30 +1.0
Or see this region's nucleotide sequence