Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2908

Experiment: Ying_Others16 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep C; time point 2
3,399,584	+		Pf6N2E2_2907	0.35	+0.0
3,399,584	+		Pf6N2E2_2907	0.35	+0.0
3,399,585	-		Pf6N2E2_2907	0.35	+1.0
3,399,585	-		Pf6N2E2_2907	0.35	+1.0
3,399,585	-		Pf6N2E2_2907	0.35	+1.0
3,399,606	-		Pf6N2E2_2907	0.36	-0.9
3,399,625	-		Pf6N2E2_2907	0.38	+0.0
3,399,639	+		Pf6N2E2_2907	0.39	+0.0
3,399,768	+		Pf6N2E2_2907	0.48	-0.6
3,399,768	+		Pf6N2E2_2907	0.48	+1.0
3,399,769	-		Pf6N2E2_2907	0.48	+0.0
3,399,809	+		Pf6N2E2_2907	0.50	-0.9
3,399,809	+		Pf6N2E2_2907	0.50	-0.4
3,399,810	-		Pf6N2E2_2907	0.51	+1.0
3,399,810	-		Pf6N2E2_2907	0.51	+0.0
3,399,810	-		Pf6N2E2_2907	0.51	-1.3
3,399,810	-		Pf6N2E2_2907	0.51	+1.0
3,399,824	+		Pf6N2E2_2907	0.52	-0.6
3,400,073	+		Pf6N2E2_2907	0.69	-0.6
3,400,150	+		Pf6N2E2_2907	0.74	-1.0
3,400,150	+		Pf6N2E2_2907	0.74	-0.6
3,400,150	+		Pf6N2E2_2907	0.74	-0.2
3,400,150	+		Pf6N2E2_2907	0.74	+1.0
3,400,151	-		Pf6N2E2_2907	0.74	+0.0
3,400,151	-		Pf6N2E2_2907	0.74	+1.0
3,400,165	+		Pf6N2E2_2907	0.75	+0.0
3,400,166	-		Pf6N2E2_2907	0.75	+1.0
3,400,195	+		Pf6N2E2_2907	0.78	+1.0
3,400,213	+		Pf6N2E2_2907	0.79	+1.0
3,400,214	-		Pf6N2E2_2907	0.79	-0.7
3,400,246	+		Pf6N2E2_2907	0.81	+0.0
3,400,246	+		Pf6N2E2_2907	0.81	+1.0
3,400,246	+		Pf6N2E2_2907	0.81	+1.0
3,400,247	-		Pf6N2E2_2907	0.81	+1.0
3,400,247	-		Pf6N2E2_2907	0.81	+0.0
3,400,247	-		Pf6N2E2_2907	0.81	+1.0
3,400,306	+		Pf6N2E2_2907	0.85	+1.0
3,400,306	+		Pf6N2E2_2907	0.85	+0.0
3,400,306	+		Pf6N2E2_2907	0.85	+1.0
3,400,324	+		Pf6N2E2_2907	0.87	+1.0
3,400,324	+		Pf6N2E2_2907	0.87	+1.0
3,400,324	+		Pf6N2E2_2907	0.87	-0.3
3,400,325	-		Pf6N2E2_2907	0.87	-2.1
3,400,342	+		Pf6N2E2_2907	0.88	-0.6
3,400,342	+		Pf6N2E2_2907	0.88	-1.0
3,400,343	-		Pf6N2E2_2907	0.88	+1.0
3,400,343	-		Pf6N2E2_2907	0.88	-0.6
3,400,343	-		Pf6N2E2_2907	0.88	+0.0
3,400,343	-		Pf6N2E2_2907	0.88	-0.6
3,400,366	+		Pf6N2E2_2907	0.89	+0.0
3,400,366	+		Pf6N2E2_2907	0.89	-1.8
3,400,513	+				+0.0
3,400,513	+				-0.6
3,400,513	+				+1.0
3,400,513	+				+1.0
3,400,513	+				+1.0
3,400,513	+				+1.0
3,400,514	-				+0.0
3,400,514	-				+1.0
3,400,514	-				-1.0
3,400,514	-				+0.0
3,400,530	+				-0.4
3,400,531	-				+0.0
3,400,531	-				-0.6
3,400,531	-				+1.0
3,400,531	-				+1.0
3,400,545	+				+1.0
3,400,545	+				+0.0
3,400,546	-				-0.9
3,400,601	-				+1.0
3,401,060	+		Pf6N2E2_2908	0.41	+0.4
3,401,087	+		Pf6N2E2_2908	0.43	+0.0
3,401,087	+		Pf6N2E2_2908	0.43	-0.6
3,401,087	+		Pf6N2E2_2908	0.43	+0.0
3,401,087	+		Pf6N2E2_2908	0.43	+1.0
3,401,087	+		Pf6N2E2_2908	0.43	+0.0
3,401,088	-		Pf6N2E2_2908	0.43	+1.0
3,401,088	-		Pf6N2E2_2908	0.43	+1.0
3,401,132	+		Pf6N2E2_2908	0.47	+0.0
3,401,133	-		Pf6N2E2_2908	0.47	-0.8
3,401,628	+		Pf6N2E2_2908	0.86	+1.0
3,401,628	+		Pf6N2E2_2908	0.86	+1.0
3,401,629	-		Pf6N2E2_2908	0.86	+1.0
3,401,629	-		Pf6N2E2_2908	0.86	-1.3
3,401,675	+		Pf6N2E2_2908	0.90	+0.0
3,401,872	-				-1.0
3,401,980	+		Pf6N2E2_2909	0.10	+1.0
3,402,103	+		Pf6N2E2_2909	0.23	+0.0
3,402,103	+		Pf6N2E2_2909	0.23	+1.0
3,402,103	+		Pf6N2E2_2909	0.23	-0.6
3,402,103	+		Pf6N2E2_2909	0.23	+0.0
3,402,103	+		Pf6N2E2_2909	0.23	+1.0
3,402,104	-		Pf6N2E2_2909	0.23	-2.9
3,402,104	-		Pf6N2E2_2909	0.23	+0.0
3,402,104	-		Pf6N2E2_2909	0.23	-0.6
3,402,193	+		Pf6N2E2_2909	0.31	+0.0
3,402,349	+		Pf6N2E2_2909	0.47	+1.0
3,402,350	-		Pf6N2E2_2909	0.47	-0.6
3,402,355	+		Pf6N2E2_2909	0.47	-1.1
3,402,356	-		Pf6N2E2_2909	0.48	-1.2
3,402,374	-		Pf6N2E2_2909	0.49	+1.0
3,402,374	-		Pf6N2E2_2909	0.49	-1.0
3,402,374	-		Pf6N2E2_2909	0.49	+1.0