Experiment: Ying_Others16 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_694 and Pf6N2E2_695 are separated by 99 nucleotides Pf6N2E2_695 and Pf6N2E2_696 overlap by 4 nucleotides Pf6N2E2_696 and Pf6N2E2_697 are separated by 40 nucleotides
Pf6N2E2_694 - Outer membrane protein (porin), at 800,120 to 801,415
_694
Pf6N2E2_695 - Nitrite reductase associated c-type cytochorome NirN, at 801,515 to 803,011
_695
Pf6N2E2_696 - Uroporphyrinogen-III methyltransferase (EC 2.1.1.107), at 803,008 to 803,850
_696
Pf6N2E2_697 - Heme d1 biosynthesis protein NirJ, at 803,891 to 805,069
_697
Position (kb) 801
802
803
804 Strain fitness (log2 ratio) -2
-1
0
1 at 800.814 kb on - strand, within Pf6N2E2_694 at 800.843 kb on + strand, within Pf6N2E2_694 at 800.843 kb on + strand, within Pf6N2E2_694 at 800.844 kb on - strand, within Pf6N2E2_694 at 800.844 kb on - strand, within Pf6N2E2_694 at 800.844 kb on - strand, within Pf6N2E2_694 at 800.864 kb on + strand, within Pf6N2E2_694 at 800.925 kb on - strand, within Pf6N2E2_694 at 801.051 kb on - strand, within Pf6N2E2_694 at 801.068 kb on + strand, within Pf6N2E2_694 at 801.068 kb on + strand, within Pf6N2E2_694 at 801.068 kb on + strand, within Pf6N2E2_694 at 801.485 kb on + strand at 801.561 kb on + strand at 801.561 kb on + strand at 801.562 kb on - strand at 801.562 kb on - strand at 801.562 kb on - strand at 801.807 kb on + strand, within Pf6N2E2_695 at 801.957 kb on + strand, within Pf6N2E2_695 at 801.958 kb on - strand, within Pf6N2E2_695 at 802.124 kb on - strand, within Pf6N2E2_695 at 802.224 kb on + strand, within Pf6N2E2_695 at 802.432 kb on - strand, within Pf6N2E2_695 at 802.726 kb on - strand, within Pf6N2E2_695 at 802.917 kb on + strand at 802.917 kb on + strand at 802.917 kb on + strand at 802.917 kb on + strand at 802.918 kb on - strand at 802.918 kb on - strand at 802.982 kb on + strand at 802.982 kb on + strand at 802.983 kb on - strand at 802.985 kb on + strand at 802.985 kb on + strand at 802.985 kb on + strand at 802.986 kb on - strand at 802.986 kb on - strand at 802.986 kb on - strand at 803.232 kb on + strand, within Pf6N2E2_696 at 803.232 kb on + strand, within Pf6N2E2_696 at 803.297 kb on + strand, within Pf6N2E2_696 at 803.297 kb on + strand, within Pf6N2E2_696 at 803.297 kb on + strand, within Pf6N2E2_696 at 803.297 kb on + strand, within Pf6N2E2_696 at 803.429 kb on + strand, within Pf6N2E2_696 at 803.429 kb on + strand, within Pf6N2E2_696 at 803.430 kb on - strand, within Pf6N2E2_696 at 803.430 kb on - strand, within Pf6N2E2_696 at 803.499 kb on - strand, within Pf6N2E2_696 at 803.646 kb on - strand, within Pf6N2E2_696 at 803.705 kb on + strand, within Pf6N2E2_696 at 803.706 kb on - strand, within Pf6N2E2_696 at 803.706 kb on - strand, within Pf6N2E2_696 at 803.706 kb on - strand, within Pf6N2E2_696
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 2 remove 800,814 - Pf6N2E2_694 0.54 -0.8 800,843 + Pf6N2E2_694 0.56 +0.8 800,843 + Pf6N2E2_694 0.56 -0.8 800,844 - Pf6N2E2_694 0.56 +0.8 800,844 - Pf6N2E2_694 0.56 +0.8 800,844 - Pf6N2E2_694 0.56 +0.8 800,864 + Pf6N2E2_694 0.57 -2.6 800,925 - Pf6N2E2_694 0.62 +0.8 801,051 - Pf6N2E2_694 0.72 -0.5 801,068 + Pf6N2E2_694 0.73 -0.2 801,068 + Pf6N2E2_694 0.73 +0.8 801,068 + Pf6N2E2_694 0.73 -0.9 801,485 + +0.2 801,561 + +0.8 801,561 + +0.8 801,562 - +0.8 801,562 - +0.8 801,562 - -0.2 801,807 + Pf6N2E2_695 0.20 +0.8 801,957 + Pf6N2E2_695 0.30 -0.2 801,958 - Pf6N2E2_695 0.30 -0.8 802,124 - Pf6N2E2_695 0.41 +0.8 802,224 + Pf6N2E2_695 0.47 +0.8 802,432 - Pf6N2E2_695 0.61 +0.8 802,726 - Pf6N2E2_695 0.81 -0.8 802,917 + -0.2 802,917 + +0.3 802,917 + +0.8 802,917 + +0.8 802,918 - +0.8 802,918 - +0.8 802,982 + -0.2 802,982 + +0.8 802,983 - +0.8 802,985 + +0.8 802,985 + -0.2 802,985 + +0.8 802,986 - +0.8 802,986 - +0.8 802,986 - +0.8 803,232 + Pf6N2E2_696 0.27 +0.4 803,232 + Pf6N2E2_696 0.27 +0.8 803,297 + Pf6N2E2_696 0.34 -1.0 803,297 + Pf6N2E2_696 0.34 +0.8 803,297 + Pf6N2E2_696 0.34 +0.8 803,297 + Pf6N2E2_696 0.34 -0.2 803,429 + Pf6N2E2_696 0.50 -0.2 803,429 + Pf6N2E2_696 0.50 +0.8 803,430 - Pf6N2E2_696 0.50 +0.8 803,430 - Pf6N2E2_696 0.50 +0.8 803,499 - Pf6N2E2_696 0.58 -0.9 803,646 - Pf6N2E2_696 0.76 +0.8 803,705 + Pf6N2E2_696 0.83 -0.1 803,706 - Pf6N2E2_696 0.83 -0.2 803,706 - Pf6N2E2_696 0.83 -1.0 803,706 - Pf6N2E2_696 0.83 +0.8
Or see this region's nucleotide sequence