Experiment: Ying_Others16 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5145 and Pf6N2E2_5146 are separated by 258 nucleotides Pf6N2E2_5146 and Pf6N2E2_5147 are separated by 0 nucleotides
Pf6N2E2_5145 - Mobile element protein, at 5,928,758 to 5,929,705
_5145
Pf6N2E2_5146 - FIG00953066: hypothetical protein, at 5,929,964 to 5,930,260
_5146
Pf6N2E2_5147 - putative exported protein, at 5,930,261 to 5,933,194
_5147
Position (kb) 5929
5930
5931 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5929.901 kb on + strand at 5929.901 kb on + strand at 5929.901 kb on + strand at 5929.906 kb on + strand at 5929.906 kb on + strand at 5929.906 kb on + strand at 5929.906 kb on + strand at 5929.906 kb on + strand at 5929.906 kb on + strand at 5929.936 kb on + strand at 5929.936 kb on + strand at 5929.936 kb on + strand at 5929.937 kb on - strand at 5929.937 kb on - strand at 5929.937 kb on - strand at 5929.937 kb on - strand at 5930.019 kb on + strand, within Pf6N2E2_5146 at 5930.019 kb on + strand, within Pf6N2E2_5146 at 5930.020 kb on - strand, within Pf6N2E2_5146 at 5930.025 kb on + strand, within Pf6N2E2_5146 at 5930.025 kb on + strand, within Pf6N2E2_5146 at 5930.025 kb on + strand, within Pf6N2E2_5146 at 5930.025 kb on + strand, within Pf6N2E2_5146 at 5930.025 kb on + strand, within Pf6N2E2_5146 at 5930.026 kb on - strand, within Pf6N2E2_5146 at 5930.026 kb on - strand, within Pf6N2E2_5146 at 5930.026 kb on - strand, within Pf6N2E2_5146 at 5930.026 kb on - strand, within Pf6N2E2_5146 at 5930.026 kb on - strand, within Pf6N2E2_5146 at 5930.026 kb on - strand, within Pf6N2E2_5146 at 5930.026 kb on - strand, within Pf6N2E2_5146 at 5930.026 kb on - strand, within Pf6N2E2_5146 at 5930.026 kb on - strand, within Pf6N2E2_5146 at 5930.026 kb on - strand, within Pf6N2E2_5146 at 5930.026 kb on - strand, within Pf6N2E2_5146 at 5930.026 kb on - strand, within Pf6N2E2_5146 at 5930.046 kb on + strand, within Pf6N2E2_5146 at 5930.047 kb on - strand, within Pf6N2E2_5146 at 5930.098 kb on - strand, within Pf6N2E2_5146 at 5930.098 kb on - strand, within Pf6N2E2_5146 at 5930.262 kb on + strand at 5930.263 kb on - strand at 5930.263 kb on - strand at 5930.337 kb on + strand at 5930.338 kb on - strand at 5930.338 kb on - strand at 5930.338 kb on - strand at 5930.390 kb on - strand at 5930.485 kb on + strand at 5930.535 kb on + strand at 5930.536 kb on - strand at 5930.536 kb on - strand at 5930.536 kb on - strand at 5930.580 kb on - strand, within Pf6N2E2_5147 at 5930.580 kb on - strand, within Pf6N2E2_5147 at 5930.580 kb on - strand, within Pf6N2E2_5147 at 5930.632 kb on - strand, within Pf6N2E2_5147 at 5930.632 kb on - strand, within Pf6N2E2_5147 at 5930.632 kb on - strand, within Pf6N2E2_5147 at 5930.632 kb on - strand, within Pf6N2E2_5147 at 5930.632 kb on - strand, within Pf6N2E2_5147 at 5930.632 kb on - strand, within Pf6N2E2_5147 at 5930.634 kb on + strand, within Pf6N2E2_5147 at 5930.634 kb on + strand, within Pf6N2E2_5147 at 5930.634 kb on + strand, within Pf6N2E2_5147 at 5930.634 kb on + strand, within Pf6N2E2_5147 at 5930.634 kb on + strand, within Pf6N2E2_5147 at 5930.635 kb on - strand, within Pf6N2E2_5147 at 5930.635 kb on - strand, within Pf6N2E2_5147 at 5930.640 kb on + strand, within Pf6N2E2_5147 at 5930.640 kb on + strand, within Pf6N2E2_5147 at 5930.640 kb on + strand, within Pf6N2E2_5147 at 5930.640 kb on + strand, within Pf6N2E2_5147 at 5930.640 kb on + strand, within Pf6N2E2_5147 at 5930.641 kb on - strand, within Pf6N2E2_5147 at 5930.646 kb on + strand, within Pf6N2E2_5147 at 5930.646 kb on + strand, within Pf6N2E2_5147 at 5930.776 kb on + strand, within Pf6N2E2_5147 at 5930.776 kb on + strand, within Pf6N2E2_5147 at 5930.861 kb on - strand, within Pf6N2E2_5147 at 5930.888 kb on + strand, within Pf6N2E2_5147 at 5930.888 kb on + strand, within Pf6N2E2_5147 at 5930.966 kb on + strand, within Pf6N2E2_5147 at 5930.967 kb on - strand, within Pf6N2E2_5147
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 2 remove 5,929,901 + +1.1 5,929,901 + -0.9 5,929,901 + +1.1 5,929,906 + -0.5 5,929,906 + +1.1 5,929,906 + -0.3 5,929,906 + +1.1 5,929,906 + +1.1 5,929,906 + +0.1 5,929,936 + +1.1 5,929,936 + +1.1 5,929,936 + -1.1 5,929,937 - -1.3 5,929,937 - +0.1 5,929,937 - +1.1 5,929,937 - -0.5 5,930,019 + Pf6N2E2_5146 0.19 -1.5 5,930,019 + Pf6N2E2_5146 0.19 -1.0 5,930,020 - Pf6N2E2_5146 0.19 +0.1 5,930,025 + Pf6N2E2_5146 0.21 +0.1 5,930,025 + Pf6N2E2_5146 0.21 +0.1 5,930,025 + Pf6N2E2_5146 0.21 +1.1 5,930,025 + Pf6N2E2_5146 0.21 +0.1 5,930,025 + Pf6N2E2_5146 0.21 -0.5 5,930,026 - Pf6N2E2_5146 0.21 +0.1 5,930,026 - Pf6N2E2_5146 0.21 -0.5 5,930,026 - Pf6N2E2_5146 0.21 +1.1 5,930,026 - Pf6N2E2_5146 0.21 +1.1 5,930,026 - Pf6N2E2_5146 0.21 -0.3 5,930,026 - Pf6N2E2_5146 0.21 +1.1 5,930,026 - Pf6N2E2_5146 0.21 -0.3 5,930,026 - Pf6N2E2_5146 0.21 -1.0 5,930,026 - Pf6N2E2_5146 0.21 -0.9 5,930,026 - Pf6N2E2_5146 0.21 -0.5 5,930,026 - Pf6N2E2_5146 0.21 +0.1 5,930,026 - Pf6N2E2_5146 0.21 -0.5 5,930,046 + Pf6N2E2_5146 0.28 +1.1 5,930,047 - Pf6N2E2_5146 0.28 +0.1 5,930,098 - Pf6N2E2_5146 0.45 +1.1 5,930,098 - Pf6N2E2_5146 0.45 -2.0 5,930,262 + -1.5 5,930,263 - +1.1 5,930,263 - -1.3 5,930,337 + +0.1 5,930,338 - +1.1 5,930,338 - +1.8 5,930,338 - -0.8 5,930,390 - -0.9 5,930,485 + +0.1 5,930,535 + -0.2 5,930,536 - +2.1 5,930,536 - +0.1 5,930,536 - -1.9 5,930,580 - Pf6N2E2_5147 0.11 -0.4 5,930,580 - Pf6N2E2_5147 0.11 -0.5 5,930,580 - Pf6N2E2_5147 0.11 -0.5 5,930,632 - Pf6N2E2_5147 0.13 +1.1 5,930,632 - Pf6N2E2_5147 0.13 +1.1 5,930,632 - Pf6N2E2_5147 0.13 -0.2 5,930,632 - Pf6N2E2_5147 0.13 +0.5 5,930,632 - Pf6N2E2_5147 0.13 -1.7 5,930,632 - Pf6N2E2_5147 0.13 +0.1 5,930,634 + Pf6N2E2_5147 0.13 +1.1 5,930,634 + Pf6N2E2_5147 0.13 +0.1 5,930,634 + Pf6N2E2_5147 0.13 +1.1 5,930,634 + Pf6N2E2_5147 0.13 -1.4 5,930,634 + Pf6N2E2_5147 0.13 -0.9 5,930,635 - Pf6N2E2_5147 0.13 +1.1 5,930,635 - Pf6N2E2_5147 0.13 +1.1 5,930,640 + Pf6N2E2_5147 0.13 +0.1 5,930,640 + Pf6N2E2_5147 0.13 -1.1 5,930,640 + Pf6N2E2_5147 0.13 +0.1 5,930,640 + Pf6N2E2_5147 0.13 +1.1 5,930,640 + Pf6N2E2_5147 0.13 -0.5 5,930,641 - Pf6N2E2_5147 0.13 -0.6 5,930,646 + Pf6N2E2_5147 0.13 +1.1 5,930,646 + Pf6N2E2_5147 0.13 +0.1 5,930,776 + Pf6N2E2_5147 0.18 +0.7 5,930,776 + Pf6N2E2_5147 0.18 +0.1 5,930,861 - Pf6N2E2_5147 0.20 +0.4 5,930,888 + Pf6N2E2_5147 0.21 +1.1 5,930,888 + Pf6N2E2_5147 0.21 -1.9 5,930,966 + Pf6N2E2_5147 0.24 +1.1 5,930,967 - Pf6N2E2_5147 0.24 +1.1
Or see this region's nucleotide sequence