Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4702

Experiment: Ying_Others16 rep B; time point 2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_4700 and Pf6N2E2_4701 are separated by 80 nucleotidesPf6N2E2_4701 and Pf6N2E2_4702 are separated by 15 nucleotidesPf6N2E2_4702 and Pf6N2E2_4703 are separated by 66 nucleotidesPf6N2E2_4703 and Pf6N2E2_4704 are separated by 27 nucleotides Pf6N2E2_4700 - Microsomal dipeptidase (EC 3.4.13.19), at 5,432,268 to 5,433,245 _4700 Pf6N2E2_4701 - FIG00953113: hypothetical protein, at 5,433,326 to 5,433,856 _4701 Pf6N2E2_4702 - DgcA Dimethylglycine demethylase subunit A, at 5,433,872 to 5,435,932 _4702 Pf6N2E2_4703 - hypothetical protein, at 5,435,999 to 5,436,112 _4703 Pf6N2E2_4704 - Dimethylglycine dehydrogenase (ferredoxin), FeS subunit DgcB (EC 1.5.7.-) (from data), at 5,436,140 to 5,438,089 _4704 Position (kb) 5433 5434 5435 5436Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 5432.968 kb on - strand, within Pf6N2E2_4700at 5433.070 kb on - strand, within Pf6N2E2_4700at 5433.270 kb on + strandat 5433.298 kb on + strandat 5433.352 kb on + strandat 5433.407 kb on + strand, within Pf6N2E2_4701at 5433.407 kb on + strand, within Pf6N2E2_4701at 5433.407 kb on + strand, within Pf6N2E2_4701at 5433.408 kb on - strand, within Pf6N2E2_4701at 5433.473 kb on + strand, within Pf6N2E2_4701at 5433.489 kb on - strand, within Pf6N2E2_4701at 5433.489 kb on - strand, within Pf6N2E2_4701at 5433.575 kb on + strand, within Pf6N2E2_4701at 5433.575 kb on + strand, within Pf6N2E2_4701at 5433.575 kb on + strand, within Pf6N2E2_4701at 5433.575 kb on + strand, within Pf6N2E2_4701at 5433.575 kb on + strand, within Pf6N2E2_4701at 5433.575 kb on + strand, within Pf6N2E2_4701at 5433.576 kb on - strand, within Pf6N2E2_4701at 5433.576 kb on - strand, within Pf6N2E2_4701at 5433.576 kb on - strand, within Pf6N2E2_4701at 5433.576 kb on - strand, within Pf6N2E2_4701at 5433.577 kb on + strand, within Pf6N2E2_4701at 5433.577 kb on + strand, within Pf6N2E2_4701at 5433.578 kb on - strand, within Pf6N2E2_4701at 5433.578 kb on - strand, within Pf6N2E2_4701at 5433.578 kb on - strand, within Pf6N2E2_4701at 5433.578 kb on - strand, within Pf6N2E2_4701at 5433.578 kb on - strand, within Pf6N2E2_4701at 5433.578 kb on - strand, within Pf6N2E2_4701at 5433.578 kb on - strand, within Pf6N2E2_4701at 5433.680 kb on + strand, within Pf6N2E2_4701at 5433.680 kb on + strand, within Pf6N2E2_4701at 5433.680 kb on + strand, within Pf6N2E2_4701at 5433.681 kb on - strand, within Pf6N2E2_4701at 5433.681 kb on - strand, within Pf6N2E2_4701at 5433.681 kb on - strand, within Pf6N2E2_4701at 5433.687 kb on - strand, within Pf6N2E2_4701at 5433.687 kb on - strand, within Pf6N2E2_4701at 5433.713 kb on + strand, within Pf6N2E2_4701at 5433.713 kb on + strand, within Pf6N2E2_4701at 5433.713 kb on + strand, within Pf6N2E2_4701at 5433.713 kb on + strand, within Pf6N2E2_4701at 5433.713 kb on + strand, within Pf6N2E2_4701at 5433.714 kb on - strand, within Pf6N2E2_4701at 5433.714 kb on - strand, within Pf6N2E2_4701at 5433.800 kb on + strand, within Pf6N2E2_4701at 5433.800 kb on + strand, within Pf6N2E2_4701at 5433.854 kb on + strandat 5433.854 kb on + strandat 5433.959 kb on + strandat 5433.959 kb on + strandat 5433.959 kb on + strandat 5433.960 kb on - strandat 5434.001 kb on + strandat 5434.001 kb on + strandat 5434.002 kb on - strandat 5434.002 kb on - strandat 5434.325 kb on + strand, within Pf6N2E2_4702at 5434.325 kb on + strand, within Pf6N2E2_4702at 5434.325 kb on + strand, within Pf6N2E2_4702at 5434.326 kb on - strand, within Pf6N2E2_4702at 5434.326 kb on - strand, within Pf6N2E2_4702at 5434.326 kb on - strand, within Pf6N2E2_4702at 5434.326 kb on - strand, within Pf6N2E2_4702at 5434.326 kb on - strand, within Pf6N2E2_4702at 5434.604 kb on + strand, within Pf6N2E2_4702at 5434.604 kb on + strand, within Pf6N2E2_4702at 5434.604 kb on + strand, within Pf6N2E2_4702at 5434.604 kb on + strand, within Pf6N2E2_4702at 5434.605 kb on - strand, within Pf6N2E2_4702at 5434.608 kb on - strand, within Pf6N2E2_4702at 5434.608 kb on - strand, within Pf6N2E2_4702at 5434.608 kb on - strand, within Pf6N2E2_4702at 5434.608 kb on - strand, within Pf6N2E2_4702at 5434.608 kb on - strand, within Pf6N2E2_4702at 5434.608 kb on - strand, within Pf6N2E2_4702at 5434.700 kb on + strand, within Pf6N2E2_4702at 5434.701 kb on - strand, within Pf6N2E2_4702at 5434.820 kb on + strand, within Pf6N2E2_4702at 5434.821 kb on - strand, within Pf6N2E2_4702at 5434.928 kb on + strand, within Pf6N2E2_4702at 5434.928 kb on + strand, within Pf6N2E2_4702at 5434.928 kb on + strand, within Pf6N2E2_4702at 5434.928 kb on + strand, within Pf6N2E2_4702at 5434.928 kb on + strand, within Pf6N2E2_4702at 5434.928 kb on + strand, within Pf6N2E2_4702at 5434.928 kb on + strand, within Pf6N2E2_4702at 5434.928 kb on + strand, within Pf6N2E2_4702at 5434.928 kb on + strand, within Pf6N2E2_4702at 5434.928 kb on + strand, within Pf6N2E2_4702at 5434.929 kb on - strand, within Pf6N2E2_4702at 5434.929 kb on - strand, within Pf6N2E2_4702at 5434.929 kb on - strand, within Pf6N2E2_4702at 5434.929 kb on - strand, within Pf6N2E2_4702at 5434.929 kb on - strand, within Pf6N2E2_4702at 5434.947 kb on - strand, within Pf6N2E2_4702at 5434.947 kb on - strand, within Pf6N2E2_4702at 5434.997 kb on + strand, within Pf6N2E2_4702at 5434.997 kb on + strand, within Pf6N2E2_4702at 5434.997 kb on + strand, within Pf6N2E2_4702at 5434.998 kb on - strand, within Pf6N2E2_4702at 5434.998 kb on - strand, within Pf6N2E2_4702at 5435.201 kb on - strand, within Pf6N2E2_4702at 5435.290 kb on - strand, within Pf6N2E2_4702at 5435.290 kb on - strand, within Pf6N2E2_4702at 5435.432 kb on + strand, within Pf6N2E2_4702at 5435.432 kb on + strand, within Pf6N2E2_4702at 5435.561 kb on + strand, within Pf6N2E2_4702at 5435.561 kb on + strand, within Pf6N2E2_4702at 5435.561 kb on + strand, within Pf6N2E2_4702at 5435.561 kb on + strand, within Pf6N2E2_4702at 5435.561 kb on + strand, within Pf6N2E2_4702at 5435.562 kb on - strand, within Pf6N2E2_4702at 5435.562 kb on - strand, within Pf6N2E2_4702at 5435.576 kb on + strand, within Pf6N2E2_4702at 5435.576 kb on + strand, within Pf6N2E2_4702at 5435.577 kb on - strand, within Pf6N2E2_4702at 5435.577 kb on - strand, within Pf6N2E2_4702at 5435.624 kb on + strand, within Pf6N2E2_4702at 5435.625 kb on - strand, within Pf6N2E2_4702at 5435.625 kb on - strand, within Pf6N2E2_4702at 5435.666 kb on + strand, within Pf6N2E2_4702at 5435.666 kb on + strand, within Pf6N2E2_4702at 5435.666 kb on + strand, within Pf6N2E2_4702at 5435.666 kb on + strand, within Pf6N2E2_4702at 5435.742 kb on - strandat 5435.744 kb on + strandat 5435.745 kb on - strandat 5435.881 kb on + strandat 5435.881 kb on + strandat 5435.882 kb on - strandat 5435.882 kb on - strandat 5435.882 kb on - strandat 5435.882 kb on - strandat 5435.882 kb on - strandat 5435.882 kb on - strandat 5435.882 kb on - strandat 5435.884 kb on + strandat 5435.885 kb on - strandat 5435.900 kb on + strandat 5435.901 kb on - strandat 5435.901 kb on - strandat 5435.947 kb on + strandat 5435.947 kb on + strandat 5435.948 kb on - strandat 5435.948 kb on - strandat 5435.948 kb on - strandat 5435.948 kb on - strandat 5436.083 kb on + strand, within Pf6N2E2_4703at 5436.083 kb on + strand, within Pf6N2E2_4703at 5436.083 kb on + strand, within Pf6N2E2_4703at 5436.083 kb on + strand, within Pf6N2E2_4703at 5436.083 kb on + strand, within Pf6N2E2_4703at 5436.083 kb on + strand, within Pf6N2E2_4703at 5436.083 kb on + strand, within Pf6N2E2_4703at 5436.084 kb on - strand, within Pf6N2E2_4703at 5436.084 kb on - strand, within Pf6N2E2_4703at 5436.084 kb on - strand, within Pf6N2E2_4703at 5436.084 kb on - strand, within Pf6N2E2_4703at 5436.084 kb on - strand, within Pf6N2E2_4703at 5436.139 kb on + strandat 5436.139 kb on + strandat 5436.139 kb on + strandat 5436.139 kb on + strandat 5436.140 kb on - strandat 5436.140 kb on - strandat 5436.140 kb on - strandat 5436.140 kb on - strandat 5436.140 kb on - strandat 5436.140 kb on - strandat 5436.161 kb on - strandat 5436.217 kb on + strandat 5436.217 kb on + strandat 5436.217 kb on + strandat 5436.217 kb on + strandat 5436.217 kb on + strandat 5436.217 kb on + strandat 5436.218 kb on - strandat 5436.218 kb on - strandat 5436.218 kb on - strandat 5436.218 kb on - strandat 5436.218 kb on - strandat 5436.218 kb on - strandat 5436.218 kb on - strandat 5436.218 kb on - strandat 5436.218 kb on - strandat 5436.284 kb on + strandat 5436.284 kb on + strandat 5436.284 kb on + strandat 5436.284 kb on + strandat 5436.284 kb on + strandat 5436.284 kb on + strandat 5436.284 kb on + strandat 5436.285 kb on - strandat 5436.323 kb on + strandat 5436.323 kb on + strandat 5436.323 kb on + strandat 5436.323 kb on + strandat 5436.323 kb on + strandat 5436.323 kb on + strandat 5436.324 kb on - strandat 5436.324 kb on - strandat 5436.324 kb on - strandat 5436.324 kb on - strandat 5436.324 kb on - strandat 5436.324 kb on - strandat 5436.324 kb on - strandat 5436.476 kb on + strand, within Pf6N2E2_4704at 5436.477 kb on - strand, within Pf6N2E2_4704at 5436.477 kb on - strand, within Pf6N2E2_4704

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 2
remove
5,432,968 - Pf6N2E2_4700 0.72 +1.2
5,433,070 - Pf6N2E2_4700 0.82 -0.8
5,433,270 + +1.2
5,433,298 + +0.2
5,433,352 + -0.4
5,433,407 + Pf6N2E2_4701 0.15 +0.2
5,433,407 + Pf6N2E2_4701 0.15 -2.5
5,433,407 + Pf6N2E2_4701 0.15 -0.8
5,433,408 - Pf6N2E2_4701 0.15 +0.2
5,433,473 + Pf6N2E2_4701 0.28 +0.2
5,433,489 - Pf6N2E2_4701 0.31 +1.2
5,433,489 - Pf6N2E2_4701 0.31 -0.4
5,433,575 + Pf6N2E2_4701 0.47 +1.2
5,433,575 + Pf6N2E2_4701 0.47 +1.2
5,433,575 + Pf6N2E2_4701 0.47 +1.2
5,433,575 + Pf6N2E2_4701 0.47 +1.2
5,433,575 + Pf6N2E2_4701 0.47 -2.0
5,433,575 + Pf6N2E2_4701 0.47 -0.4
5,433,576 - Pf6N2E2_4701 0.47 -0.4
5,433,576 - Pf6N2E2_4701 0.47 -4.2
5,433,576 - Pf6N2E2_4701 0.47 -2.1
5,433,576 - Pf6N2E2_4701 0.47 -2.6
5,433,577 + Pf6N2E2_4701 0.47 +0.2
5,433,577 + Pf6N2E2_4701 0.47 +1.2
5,433,578 - Pf6N2E2_4701 0.47 -2.8
5,433,578 - Pf6N2E2_4701 0.47 +1.2
5,433,578 - Pf6N2E2_4701 0.47 +1.2
5,433,578 - Pf6N2E2_4701 0.47 -0.8
5,433,578 - Pf6N2E2_4701 0.47 -3.3
5,433,578 - Pf6N2E2_4701 0.47 +0.2
5,433,578 - Pf6N2E2_4701 0.47 +0.2
5,433,680 + Pf6N2E2_4701 0.67 +1.2
5,433,680 + Pf6N2E2_4701 0.67 -0.4
5,433,680 + Pf6N2E2_4701 0.67 +0.2
5,433,681 - Pf6N2E2_4701 0.67 +1.2
5,433,681 - Pf6N2E2_4701 0.67 +0.2
5,433,681 - Pf6N2E2_4701 0.67 -1.6
5,433,687 - Pf6N2E2_4701 0.68 -0.8
5,433,687 - Pf6N2E2_4701 0.68 +1.2
5,433,713 + Pf6N2E2_4701 0.73 +0.2
5,433,713 + Pf6N2E2_4701 0.73 -0.6
5,433,713 + Pf6N2E2_4701 0.73 +1.2
5,433,713 + Pf6N2E2_4701 0.73 -1.4
5,433,713 + Pf6N2E2_4701 0.73 +1.2
5,433,714 - Pf6N2E2_4701 0.73 -3.1
5,433,714 - Pf6N2E2_4701 0.73 -0.4
5,433,800 + Pf6N2E2_4701 0.89 +0.2
5,433,800 + Pf6N2E2_4701 0.89 +1.2
5,433,854 + +1.2
5,433,854 + -2.0
5,433,959 + -0.8
5,433,959 + +1.2
5,433,959 + +1.2
5,433,960 - -2.1
5,434,001 + -1.6
5,434,001 + -2.6
5,434,002 - -0.4
5,434,002 - +0.2
5,434,325 + Pf6N2E2_4702 0.22 -1.8
5,434,325 + Pf6N2E2_4702 0.22 -0.7
5,434,325 + Pf6N2E2_4702 0.22 +1.2
5,434,326 - Pf6N2E2_4702 0.22 -0.9
5,434,326 - Pf6N2E2_4702 0.22 -3.5
5,434,326 - Pf6N2E2_4702 0.22 -3.2
5,434,326 - Pf6N2E2_4702 0.22 +1.2
5,434,326 - Pf6N2E2_4702 0.22 +0.2
5,434,604 + Pf6N2E2_4702 0.36 +0.2
5,434,604 + Pf6N2E2_4702 0.36 -1.0
5,434,604 + Pf6N2E2_4702 0.36 -2.9
5,434,604 + Pf6N2E2_4702 0.36 +1.2
5,434,605 - Pf6N2E2_4702 0.36 -5.2
5,434,608 - Pf6N2E2_4702 0.36 -0.4
5,434,608 - Pf6N2E2_4702 0.36 -1.6
5,434,608 - Pf6N2E2_4702 0.36 -0.8
5,434,608 - Pf6N2E2_4702 0.36 -3.2
5,434,608 - Pf6N2E2_4702 0.36 +1.2
5,434,608 - Pf6N2E2_4702 0.36 +0.2
5,434,700 + Pf6N2E2_4702 0.40 -2.2
5,434,701 - Pf6N2E2_4702 0.40 -2.2
5,434,820 + Pf6N2E2_4702 0.46 +0.2
5,434,821 - Pf6N2E2_4702 0.46 -2.6
5,434,928 + Pf6N2E2_4702 0.51 -0.4
5,434,928 + Pf6N2E2_4702 0.51 +0.2
5,434,928 + Pf6N2E2_4702 0.51 -3.1
5,434,928 + Pf6N2E2_4702 0.51 +1.2
5,434,928 + Pf6N2E2_4702 0.51 +1.2
5,434,928 + Pf6N2E2_4702 0.51 -2.6
5,434,928 + Pf6N2E2_4702 0.51 -1.2
5,434,928 + Pf6N2E2_4702 0.51 +1.2
5,434,928 + Pf6N2E2_4702 0.51 -0.8
5,434,928 + Pf6N2E2_4702 0.51 +1.2
5,434,929 - Pf6N2E2_4702 0.51 +0.2
5,434,929 - Pf6N2E2_4702 0.51 +1.2
5,434,929 - Pf6N2E2_4702 0.51 +1.4
5,434,929 - Pf6N2E2_4702 0.51 -1.1
5,434,929 - Pf6N2E2_4702 0.51 -2.2
5,434,947 - Pf6N2E2_4702 0.52 -3.3
5,434,947 - Pf6N2E2_4702 0.52 +0.2
5,434,997 + Pf6N2E2_4702 0.55 +1.2
5,434,997 + Pf6N2E2_4702 0.55 -3.0
5,434,997 + Pf6N2E2_4702 0.55 +1.2
5,434,998 - Pf6N2E2_4702 0.55 +1.2
5,434,998 - Pf6N2E2_4702 0.55 +1.2
5,435,201 - Pf6N2E2_4702 0.64 +0.2
5,435,290 - Pf6N2E2_4702 0.69 -3.5
5,435,290 - Pf6N2E2_4702 0.69 -2.0
5,435,432 + Pf6N2E2_4702 0.76 +1.2
5,435,432 + Pf6N2E2_4702 0.76 +0.2
5,435,561 + Pf6N2E2_4702 0.82 -3.5
5,435,561 + Pf6N2E2_4702 0.82 -0.8
5,435,561 + Pf6N2E2_4702 0.82 -3.3
5,435,561 + Pf6N2E2_4702 0.82 +0.2
5,435,561 + Pf6N2E2_4702 0.82 -3.5
5,435,562 - Pf6N2E2_4702 0.82 +1.2
5,435,562 - Pf6N2E2_4702 0.82 +0.2
5,435,576 + Pf6N2E2_4702 0.83 -0.4
5,435,576 + Pf6N2E2_4702 0.83 -1.6
5,435,577 - Pf6N2E2_4702 0.83 -0.4
5,435,577 - Pf6N2E2_4702 0.83 -3.7
5,435,624 + Pf6N2E2_4702 0.85 +0.2
5,435,625 - Pf6N2E2_4702 0.85 -3.0
5,435,625 - Pf6N2E2_4702 0.85 -0.4
5,435,666 + Pf6N2E2_4702 0.87 -2.6
5,435,666 + Pf6N2E2_4702 0.87 +0.2
5,435,666 + Pf6N2E2_4702 0.87 -1.6
5,435,666 + Pf6N2E2_4702 0.87 +0.2
5,435,742 - +1.2
5,435,744 + +0.2
5,435,745 - -1.1
5,435,881 + -0.4
5,435,881 + +1.2
5,435,882 - +1.2
5,435,882 - +1.2
5,435,882 - +1.2
5,435,882 - +1.2
5,435,882 - -0.8
5,435,882 - -1.0
5,435,882 - +1.2
5,435,884 + +0.2
5,435,885 - +0.2
5,435,900 + -1.1
5,435,901 - -2.6
5,435,901 - +0.2
5,435,947 + +1.2
5,435,947 + -0.4
5,435,948 - +1.2
5,435,948 - -3.2
5,435,948 - -1.6
5,435,948 - +1.2
5,436,083 + Pf6N2E2_4703 0.74 +0.2
5,436,083 + Pf6N2E2_4703 0.74 -0.7
5,436,083 + Pf6N2E2_4703 0.74 +1.2
5,436,083 + Pf6N2E2_4703 0.74 +1.2
5,436,083 + Pf6N2E2_4703 0.74 -0.8
5,436,083 + Pf6N2E2_4703 0.74 -0.4
5,436,083 + Pf6N2E2_4703 0.74 -1.4
5,436,084 - Pf6N2E2_4703 0.75 -3.1
5,436,084 - Pf6N2E2_4703 0.75 -3.0
5,436,084 - Pf6N2E2_4703 0.75 +1.2
5,436,084 - Pf6N2E2_4703 0.75 -2.0
5,436,084 - Pf6N2E2_4703 0.75 -1.8
5,436,139 + +0.2
5,436,139 + -2.0
5,436,139 + +1.2
5,436,139 + +0.2
5,436,140 - +1.2
5,436,140 - -2.5
5,436,140 - +1.2
5,436,140 - +1.2
5,436,140 - +1.2
5,436,140 - +1.2
5,436,161 - -0.8
5,436,217 + +1.2
5,436,217 + +0.2
5,436,217 + -1.1
5,436,217 + +0.2
5,436,217 + +1.2
5,436,217 + +0.2
5,436,218 - +0.2
5,436,218 - -0.8
5,436,218 - +1.2
5,436,218 - +1.2
5,436,218 - +0.2
5,436,218 - -2.4
5,436,218 - -3.4
5,436,218 - -1.1
5,436,218 - +1.2
5,436,284 + +0.2
5,436,284 + +1.2
5,436,284 + -0.4
5,436,284 + +0.2
5,436,284 + -1.3
5,436,284 + -1.8
5,436,284 + +1.2
5,436,285 - -2.8
5,436,323 + +1.2
5,436,323 + -3.0
5,436,323 + +0.2
5,436,323 + +1.2
5,436,323 + -1.4
5,436,323 + -3.7
5,436,324 - +0.2
5,436,324 - -3.1
5,436,324 - +0.2
5,436,324 - -2.5
5,436,324 - -2.9
5,436,324 - -0.4
5,436,324 - -2.6
5,436,476 + Pf6N2E2_4704 0.17 -0.4
5,436,477 - Pf6N2E2_4704 0.17 -4.0
5,436,477 - Pf6N2E2_4704 0.17 +0.2

Or see this region's nucleotide sequence