Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4385

Experiment: Ying_Others16 rep B; time point 2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_4384 and Pf6N2E2_4385 are separated by 121 nucleotidesPf6N2E2_4385 and Pf6N2E2_4386 are separated by 61 nucleotides Pf6N2E2_4384 - Major facilitator family transporter, at 5,112,138 to 5,113,280 _4384 Pf6N2E2_4385 - Cardiolipin synthetase (EC 2.7.8.-), at 5,113,402 to 5,114,967 _4385 Pf6N2E2_4386 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 5,115,029 to 5,116,462 _4386 Position (kb) 5113 5114 5115Strain fitness (log2 ratio) -2 -1 0 1at 5112.546 kb on + strand, within Pf6N2E2_4384at 5112.547 kb on - strand, within Pf6N2E2_4384at 5112.547 kb on - strand, within Pf6N2E2_4384at 5112.607 kb on - strand, within Pf6N2E2_4384at 5112.649 kb on + strand, within Pf6N2E2_4384at 5112.649 kb on + strand, within Pf6N2E2_4384at 5112.650 kb on - strand, within Pf6N2E2_4384at 5112.698 kb on + strand, within Pf6N2E2_4384at 5112.699 kb on - strand, within Pf6N2E2_4384at 5112.699 kb on - strand, within Pf6N2E2_4384at 5112.699 kb on - strand, within Pf6N2E2_4384at 5112.804 kb on + strand, within Pf6N2E2_4384at 5112.804 kb on + strand, within Pf6N2E2_4384at 5112.805 kb on - strand, within Pf6N2E2_4384at 5112.805 kb on - strand, within Pf6N2E2_4384at 5112.835 kb on + strand, within Pf6N2E2_4384at 5112.835 kb on + strand, within Pf6N2E2_4384at 5112.835 kb on + strand, within Pf6N2E2_4384at 5112.835 kb on + strand, within Pf6N2E2_4384at 5112.836 kb on - strand, within Pf6N2E2_4384at 5112.836 kb on - strand, within Pf6N2E2_4384at 5112.958 kb on + strand, within Pf6N2E2_4384at 5113.015 kb on + strand, within Pf6N2E2_4384at 5113.016 kb on - strand, within Pf6N2E2_4384at 5113.404 kb on - strandat 5113.404 kb on - strandat 5113.547 kb on + strandat 5113.547 kb on + strandat 5113.548 kb on - strandat 5113.548 kb on - strandat 5113.548 kb on - strandat 5113.548 kb on - strandat 5113.751 kb on + strand, within Pf6N2E2_4385at 5113.751 kb on + strand, within Pf6N2E2_4385at 5113.751 kb on + strand, within Pf6N2E2_4385at 5113.751 kb on + strand, within Pf6N2E2_4385at 5113.751 kb on + strand, within Pf6N2E2_4385at 5113.751 kb on + strand, within Pf6N2E2_4385at 5113.752 kb on - strand, within Pf6N2E2_4385at 5113.752 kb on - strand, within Pf6N2E2_4385at 5113.752 kb on - strand, within Pf6N2E2_4385at 5113.752 kb on - strand, within Pf6N2E2_4385at 5113.937 kb on + strand, within Pf6N2E2_4385at 5113.937 kb on + strand, within Pf6N2E2_4385at 5113.937 kb on + strand, within Pf6N2E2_4385at 5113.937 kb on + strand, within Pf6N2E2_4385at 5113.937 kb on + strand, within Pf6N2E2_4385at 5113.938 kb on - strand, within Pf6N2E2_4385at 5113.938 kb on - strand, within Pf6N2E2_4385at 5113.938 kb on - strand, within Pf6N2E2_4385at 5113.938 kb on - strand, within Pf6N2E2_4385at 5113.967 kb on + strand, within Pf6N2E2_4385at 5114.168 kb on + strand, within Pf6N2E2_4385at 5114.169 kb on - strand, within Pf6N2E2_4385at 5114.300 kb on + strand, within Pf6N2E2_4385at 5114.300 kb on + strand, within Pf6N2E2_4385at 5114.301 kb on - strand, within Pf6N2E2_4385at 5114.393 kb on + strand, within Pf6N2E2_4385at 5114.393 kb on + strand, within Pf6N2E2_4385at 5114.393 kb on + strand, within Pf6N2E2_4385at 5114.393 kb on + strand, within Pf6N2E2_4385at 5114.393 kb on + strand, within Pf6N2E2_4385at 5114.393 kb on + strand, within Pf6N2E2_4385at 5114.393 kb on + strand, within Pf6N2E2_4385at 5114.394 kb on - strand, within Pf6N2E2_4385at 5114.394 kb on - strand, within Pf6N2E2_4385at 5114.394 kb on - strand, within Pf6N2E2_4385at 5114.394 kb on - strand, within Pf6N2E2_4385at 5114.394 kb on - strand, within Pf6N2E2_4385at 5114.711 kb on + strand, within Pf6N2E2_4385at 5114.711 kb on + strand, within Pf6N2E2_4385at 5114.711 kb on + strand, within Pf6N2E2_4385at 5114.711 kb on + strand, within Pf6N2E2_4385at 5114.711 kb on + strand, within Pf6N2E2_4385at 5114.711 kb on + strand, within Pf6N2E2_4385at 5114.711 kb on + strand, within Pf6N2E2_4385at 5114.711 kb on + strand, within Pf6N2E2_4385at 5114.711 kb on + strand, within Pf6N2E2_4385at 5114.711 kb on + strand, within Pf6N2E2_4385at 5114.711 kb on + strand, within Pf6N2E2_4385at 5114.711 kb on + strand, within Pf6N2E2_4385at 5114.711 kb on + strand, within Pf6N2E2_4385at 5114.712 kb on - strand, within Pf6N2E2_4385at 5114.712 kb on - strand, within Pf6N2E2_4385at 5114.712 kb on - strand, within Pf6N2E2_4385at 5114.712 kb on - strand, within Pf6N2E2_4385at 5114.712 kb on - strand, within Pf6N2E2_4385at 5114.712 kb on - strand, within Pf6N2E2_4385at 5114.712 kb on - strand, within Pf6N2E2_4385at 5114.712 kb on - strand, within Pf6N2E2_4385at 5114.712 kb on - strand, within Pf6N2E2_4385at 5114.714 kb on + strand, within Pf6N2E2_4385at 5114.714 kb on + strand, within Pf6N2E2_4385at 5114.715 kb on - strand, within Pf6N2E2_4385at 5114.715 kb on - strand, within Pf6N2E2_4385at 5114.715 kb on - strand, within Pf6N2E2_4385at 5114.969 kb on + strandat 5114.969 kb on + strandat 5114.969 kb on + strandat 5114.969 kb on + strandat 5114.969 kb on + strandat 5114.969 kb on + strandat 5114.970 kb on - strandat 5114.970 kb on - strandat 5114.970 kb on - strandat 5114.970 kb on - strandat 5115.126 kb on + strandat 5115.126 kb on + strandat 5115.126 kb on + strandat 5115.126 kb on + strandat 5115.126 kb on + strandat 5115.126 kb on + strandat 5115.126 kb on + strandat 5115.126 kb on + strandat 5115.127 kb on - strandat 5115.127 kb on - strandat 5115.127 kb on - strandat 5115.127 kb on - strandat 5115.127 kb on - strandat 5115.127 kb on - strandat 5115.127 kb on - strandat 5115.127 kb on - strandat 5115.127 kb on - strandat 5115.127 kb on - strandat 5115.127 kb on - strandat 5115.127 kb on - strandat 5115.127 kb on - strandat 5115.127 kb on - strandat 5115.127 kb on - strandat 5115.127 kb on - strandat 5115.127 kb on - strandat 5115.127 kb on - strandat 5115.150 kb on + strandat 5115.150 kb on + strandat 5115.150 kb on + strandat 5115.151 kb on - strandat 5115.368 kb on + strand, within Pf6N2E2_4386at 5115.369 kb on - strand, within Pf6N2E2_4386at 5115.450 kb on + strand, within Pf6N2E2_4386at 5115.450 kb on + strand, within Pf6N2E2_4386at 5115.450 kb on + strand, within Pf6N2E2_4386at 5115.450 kb on + strand, within Pf6N2E2_4386at 5115.450 kb on + strand, within Pf6N2E2_4386at 5115.450 kb on + strand, within Pf6N2E2_4386at 5115.450 kb on + strand, within Pf6N2E2_4386at 5115.450 kb on + strand, within Pf6N2E2_4386at 5115.450 kb on + strand, within Pf6N2E2_4386at 5115.450 kb on + strand, within Pf6N2E2_4386at 5115.450 kb on + strand, within Pf6N2E2_4386at 5115.450 kb on + strand, within Pf6N2E2_4386at 5115.451 kb on - strand, within Pf6N2E2_4386at 5115.451 kb on - strand, within Pf6N2E2_4386at 5115.451 kb on - strand, within Pf6N2E2_4386at 5115.451 kb on - strand, within Pf6N2E2_4386at 5115.594 kb on + strand, within Pf6N2E2_4386at 5115.594 kb on + strand, within Pf6N2E2_4386at 5115.594 kb on + strand, within Pf6N2E2_4386at 5115.594 kb on + strand, within Pf6N2E2_4386at 5115.594 kb on + strand, within Pf6N2E2_4386at 5115.595 kb on - strand, within Pf6N2E2_4386at 5115.595 kb on - strand, within Pf6N2E2_4386at 5115.595 kb on - strand, within Pf6N2E2_4386at 5115.600 kb on + strand, within Pf6N2E2_4386at 5115.600 kb on + strand, within Pf6N2E2_4386at 5115.600 kb on + strand, within Pf6N2E2_4386at 5115.600 kb on + strand, within Pf6N2E2_4386at 5115.601 kb on - strand, within Pf6N2E2_4386at 5115.615 kb on + strand, within Pf6N2E2_4386at 5115.615 kb on + strand, within Pf6N2E2_4386at 5115.615 kb on + strand, within Pf6N2E2_4386at 5115.615 kb on + strand, within Pf6N2E2_4386at 5115.616 kb on - strand, within Pf6N2E2_4386at 5115.616 kb on - strand, within Pf6N2E2_4386at 5115.616 kb on - strand, within Pf6N2E2_4386at 5115.616 kb on - strand, within Pf6N2E2_4386at 5115.616 kb on - strand, within Pf6N2E2_4386at 5115.616 kb on - strand, within Pf6N2E2_4386at 5115.676 kb on + strand, within Pf6N2E2_4386at 5115.676 kb on + strand, within Pf6N2E2_4386at 5115.676 kb on + strand, within Pf6N2E2_4386at 5115.676 kb on + strand, within Pf6N2E2_4386at 5115.676 kb on + strand, within Pf6N2E2_4386at 5115.676 kb on + strand, within Pf6N2E2_4386at 5115.676 kb on + strand, within Pf6N2E2_4386at 5115.677 kb on - strand, within Pf6N2E2_4386at 5115.679 kb on + strand, within Pf6N2E2_4386at 5115.696 kb on + strand, within Pf6N2E2_4386at 5115.696 kb on + strand, within Pf6N2E2_4386at 5115.697 kb on - strand, within Pf6N2E2_4386at 5115.697 kb on - strand, within Pf6N2E2_4386at 5115.697 kb on - strand, within Pf6N2E2_4386at 5115.731 kb on + strand, within Pf6N2E2_4386at 5115.731 kb on + strand, within Pf6N2E2_4386at 5115.731 kb on + strand, within Pf6N2E2_4386at 5115.731 kb on + strand, within Pf6N2E2_4386at 5115.732 kb on - strand, within Pf6N2E2_4386at 5115.732 kb on - strand, within Pf6N2E2_4386at 5115.732 kb on - strand, within Pf6N2E2_4386at 5115.732 kb on - strand, within Pf6N2E2_4386

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 2
remove
5,112,546 + Pf6N2E2_4384 0.36 +1.1
5,112,547 - Pf6N2E2_4384 0.36 -1.4
5,112,547 - Pf6N2E2_4384 0.36 +1.1
5,112,607 - Pf6N2E2_4384 0.41 -1.4
5,112,649 + Pf6N2E2_4384 0.45 -1.0
5,112,649 + Pf6N2E2_4384 0.45 +1.1
5,112,650 - Pf6N2E2_4384 0.45 +1.1
5,112,698 + Pf6N2E2_4384 0.49 +1.1
5,112,699 - Pf6N2E2_4384 0.49 +0.1
5,112,699 - Pf6N2E2_4384 0.49 +0.1
5,112,699 - Pf6N2E2_4384 0.49 -0.4
5,112,804 + Pf6N2E2_4384 0.58 +0.6
5,112,804 + Pf6N2E2_4384 0.58 +1.1
5,112,805 - Pf6N2E2_4384 0.58 -1.7
5,112,805 - Pf6N2E2_4384 0.58 -0.8
5,112,835 + Pf6N2E2_4384 0.61 -0.7
5,112,835 + Pf6N2E2_4384 0.61 +0.1
5,112,835 + Pf6N2E2_4384 0.61 +1.1
5,112,835 + Pf6N2E2_4384 0.61 +0.1
5,112,836 - Pf6N2E2_4384 0.61 -0.7
5,112,836 - Pf6N2E2_4384 0.61 +0.1
5,112,958 + Pf6N2E2_4384 0.72 -0.4
5,113,015 + Pf6N2E2_4384 0.77 -1.1
5,113,016 - Pf6N2E2_4384 0.77 -1.1
5,113,404 - -1.2
5,113,404 - +0.1
5,113,547 + +0.1
5,113,547 + -1.2
5,113,548 - -0.4
5,113,548 - +0.1
5,113,548 - +1.1
5,113,548 - -0.9
5,113,751 + Pf6N2E2_4385 0.22 +1.1
5,113,751 + Pf6N2E2_4385 0.22 +0.1
5,113,751 + Pf6N2E2_4385 0.22 -1.1
5,113,751 + Pf6N2E2_4385 0.22 -1.0
5,113,751 + Pf6N2E2_4385 0.22 -1.2
5,113,751 + Pf6N2E2_4385 0.22 -1.1
5,113,752 - Pf6N2E2_4385 0.22 +0.1
5,113,752 - Pf6N2E2_4385 0.22 +1.1
5,113,752 - Pf6N2E2_4385 0.22 +0.1
5,113,752 - Pf6N2E2_4385 0.22 -0.6
5,113,937 + Pf6N2E2_4385 0.34 +1.1
5,113,937 + Pf6N2E2_4385 0.34 +0.1
5,113,937 + Pf6N2E2_4385 0.34 +1.1
5,113,937 + Pf6N2E2_4385 0.34 -0.9
5,113,937 + Pf6N2E2_4385 0.34 +1.1
5,113,938 - Pf6N2E2_4385 0.34 +0.1
5,113,938 - Pf6N2E2_4385 0.34 -0.7
5,113,938 - Pf6N2E2_4385 0.34 +0.1
5,113,938 - Pf6N2E2_4385 0.34 +1.1
5,113,967 + Pf6N2E2_4385 0.36 -0.4
5,114,168 + Pf6N2E2_4385 0.49 -0.4
5,114,169 - Pf6N2E2_4385 0.49 -0.9
5,114,300 + Pf6N2E2_4385 0.57 +0.1
5,114,300 + Pf6N2E2_4385 0.57 +1.1
5,114,301 - Pf6N2E2_4385 0.57 +0.1
5,114,393 + Pf6N2E2_4385 0.63 +0.1
5,114,393 + Pf6N2E2_4385 0.63 +1.1
5,114,393 + Pf6N2E2_4385 0.63 +0.1
5,114,393 + Pf6N2E2_4385 0.63 -1.4
5,114,393 + Pf6N2E2_4385 0.63 +0.1
5,114,393 + Pf6N2E2_4385 0.63 -0.7
5,114,393 + Pf6N2E2_4385 0.63 -0.4
5,114,394 - Pf6N2E2_4385 0.63 -0.3
5,114,394 - Pf6N2E2_4385 0.63 +0.1
5,114,394 - Pf6N2E2_4385 0.63 -0.4
5,114,394 - Pf6N2E2_4385 0.63 +0.1
5,114,394 - Pf6N2E2_4385 0.63 +1.1
5,114,711 + Pf6N2E2_4385 0.84 +0.6
5,114,711 + Pf6N2E2_4385 0.84 +0.1
5,114,711 + Pf6N2E2_4385 0.84 +0.1
5,114,711 + Pf6N2E2_4385 0.84 -0.4
5,114,711 + Pf6N2E2_4385 0.84 +1.1
5,114,711 + Pf6N2E2_4385 0.84 +1.1
5,114,711 + Pf6N2E2_4385 0.84 +1.1
5,114,711 + Pf6N2E2_4385 0.84 +0.1
5,114,711 + Pf6N2E2_4385 0.84 +0.1
5,114,711 + Pf6N2E2_4385 0.84 -0.7
5,114,711 + Pf6N2E2_4385 0.84 +0.1
5,114,711 + Pf6N2E2_4385 0.84 +0.1
5,114,711 + Pf6N2E2_4385 0.84 -0.8
5,114,712 - Pf6N2E2_4385 0.84 +1.1
5,114,712 - Pf6N2E2_4385 0.84 +1.1
5,114,712 - Pf6N2E2_4385 0.84 +0.1
5,114,712 - Pf6N2E2_4385 0.84 -0.9
5,114,712 - Pf6N2E2_4385 0.84 -1.2
5,114,712 - Pf6N2E2_4385 0.84 +1.1
5,114,712 - Pf6N2E2_4385 0.84 +1.1
5,114,712 - Pf6N2E2_4385 0.84 +0.1
5,114,712 - Pf6N2E2_4385 0.84 +1.1
5,114,714 + Pf6N2E2_4385 0.84 -1.2
5,114,714 + Pf6N2E2_4385 0.84 +0.1
5,114,715 - Pf6N2E2_4385 0.84 +1.1
5,114,715 - Pf6N2E2_4385 0.84 +1.1
5,114,715 - Pf6N2E2_4385 0.84 -1.4
5,114,969 + +0.1
5,114,969 + +1.1
5,114,969 + -0.8
5,114,969 + +1.1
5,114,969 + +0.1
5,114,969 + -0.2
5,114,970 - -0.7
5,114,970 - +1.1
5,114,970 - -0.9
5,114,970 - -0.9
5,115,126 + -0.4
5,115,126 + -1.7
5,115,126 + +1.1
5,115,126 + +1.1
5,115,126 + -0.4
5,115,126 + -0.9
5,115,126 + -1.2
5,115,126 + -0.3
5,115,127 - -0.4
5,115,127 - -0.5
5,115,127 - +1.1
5,115,127 - -0.5
5,115,127 - -0.9
5,115,127 - -0.4
5,115,127 - -1.0
5,115,127 - -0.5
5,115,127 - -0.4
5,115,127 - -0.6
5,115,127 - -1.9
5,115,127 - -0.4
5,115,127 - -0.4
5,115,127 - -0.3
5,115,127 - +0.1
5,115,127 - -0.4
5,115,127 - -0.5
5,115,127 - -0.4
5,115,150 + -1.2
5,115,150 + +0.1
5,115,150 + +1.1
5,115,151 - -0.5
5,115,368 + Pf6N2E2_4386 0.24 +0.1
5,115,369 - Pf6N2E2_4386 0.24 +1.1
5,115,450 + Pf6N2E2_4386 0.29 +0.6
5,115,450 + Pf6N2E2_4386 0.29 -1.3
5,115,450 + Pf6N2E2_4386 0.29 -0.7
5,115,450 + Pf6N2E2_4386 0.29 -0.4
5,115,450 + Pf6N2E2_4386 0.29 +0.1
5,115,450 + Pf6N2E2_4386 0.29 -0.0
5,115,450 + Pf6N2E2_4386 0.29 +1.1
5,115,450 + Pf6N2E2_4386 0.29 +0.1
5,115,450 + Pf6N2E2_4386 0.29 -0.9
5,115,450 + Pf6N2E2_4386 0.29 -0.4
5,115,450 + Pf6N2E2_4386 0.29 +1.1
5,115,450 + Pf6N2E2_4386 0.29 +0.1
5,115,451 - Pf6N2E2_4386 0.29 -0.8
5,115,451 - Pf6N2E2_4386 0.29 -0.5
5,115,451 - Pf6N2E2_4386 0.29 +1.1
5,115,451 - Pf6N2E2_4386 0.29 +0.1
5,115,594 + Pf6N2E2_4386 0.39 +0.1
5,115,594 + Pf6N2E2_4386 0.39 +0.1
5,115,594 + Pf6N2E2_4386 0.39 +1.1
5,115,594 + Pf6N2E2_4386 0.39 -0.4
5,115,594 + Pf6N2E2_4386 0.39 +1.1
5,115,595 - Pf6N2E2_4386 0.39 -0.4
5,115,595 - Pf6N2E2_4386 0.39 -1.2
5,115,595 - Pf6N2E2_4386 0.39 +0.1
5,115,600 + Pf6N2E2_4386 0.40 +1.1
5,115,600 + Pf6N2E2_4386 0.40 +1.1
5,115,600 + Pf6N2E2_4386 0.40 +1.1
5,115,600 + Pf6N2E2_4386 0.40 +1.1
5,115,601 - Pf6N2E2_4386 0.40 -2.4
5,115,615 + Pf6N2E2_4386 0.41 +1.1
5,115,615 + Pf6N2E2_4386 0.41 +0.1
5,115,615 + Pf6N2E2_4386 0.41 +1.1
5,115,615 + Pf6N2E2_4386 0.41 +0.1
5,115,616 - Pf6N2E2_4386 0.41 +1.1
5,115,616 - Pf6N2E2_4386 0.41 -0.3
5,115,616 - Pf6N2E2_4386 0.41 -0.7
5,115,616 - Pf6N2E2_4386 0.41 -1.2
5,115,616 - Pf6N2E2_4386 0.41 +0.1
5,115,616 - Pf6N2E2_4386 0.41 +1.1
5,115,676 + Pf6N2E2_4386 0.45 -0.4
5,115,676 + Pf6N2E2_4386 0.45 +0.3
5,115,676 + Pf6N2E2_4386 0.45 +0.1
5,115,676 + Pf6N2E2_4386 0.45 +0.1
5,115,676 + Pf6N2E2_4386 0.45 +0.1
5,115,676 + Pf6N2E2_4386 0.45 +0.1
5,115,676 + Pf6N2E2_4386 0.45 +0.1
5,115,677 - Pf6N2E2_4386 0.45 +0.1
5,115,679 + Pf6N2E2_4386 0.45 -0.4
5,115,696 + Pf6N2E2_4386 0.47 +1.1
5,115,696 + Pf6N2E2_4386 0.47 -1.0
5,115,697 - Pf6N2E2_4386 0.47 +0.1
5,115,697 - Pf6N2E2_4386 0.47 +1.1
5,115,697 - Pf6N2E2_4386 0.47 +1.1
5,115,731 + Pf6N2E2_4386 0.49 -0.7
5,115,731 + Pf6N2E2_4386 0.49 -0.4
5,115,731 + Pf6N2E2_4386 0.49 -0.9
5,115,731 + Pf6N2E2_4386 0.49 +0.1
5,115,732 - Pf6N2E2_4386 0.49 +1.1
5,115,732 - Pf6N2E2_4386 0.49 -0.4
5,115,732 - Pf6N2E2_4386 0.49 +1.1
5,115,732 - Pf6N2E2_4386 0.49 -1.2

Or see this region's nucleotide sequence