Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3842

Experiment: Ying_Others16 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3839 and Pf6N2E2_3840 are separated by 42 nucleotidesPf6N2E2_3840 and Pf6N2E2_3841 overlap by 1 nucleotidesPf6N2E2_3841 and Pf6N2E2_3842 overlap by 1 nucleotidesPf6N2E2_3842 and Pf6N2E2_3843 are separated by 281 nucleotides Pf6N2E2_3839 - 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data), at 4,472,170 to 4,472,907 _3839 Pf6N2E2_3840 - FIG00956267: hypothetical protein, at 4,472,950 to 4,473,204 _3840 Pf6N2E2_3841 - Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-), at 4,473,204 to 4,473,842 _3841 Pf6N2E2_3842 - Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19), at 4,473,842 to 4,474,435 _3842 Pf6N2E2_3843 - MFS permease, at 4,474,717 to 4,476,378 _3843 Position (kb) 4473 4474 4475Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 4472.864 kb on - strandat 4472.864 kb on - strandat 4472.890 kb on - strandat 4472.924 kb on + strandat 4472.925 kb on - strandat 4472.925 kb on - strandat 4472.925 kb on - strandat 4472.930 kb on + strandat 4473.003 kb on + strand, within Pf6N2E2_3840at 4473.004 kb on - strand, within Pf6N2E2_3840at 4473.004 kb on - strand, within Pf6N2E2_3840at 4473.038 kb on + strand, within Pf6N2E2_3840at 4473.039 kb on - strand, within Pf6N2E2_3840at 4473.039 kb on - strand, within Pf6N2E2_3840at 4473.039 kb on - strand, within Pf6N2E2_3840at 4473.039 kb on - strand, within Pf6N2E2_3840at 4473.039 kb on - strand, within Pf6N2E2_3840at 4473.039 kb on - strand, within Pf6N2E2_3840at 4473.041 kb on + strand, within Pf6N2E2_3840at 4473.041 kb on + strand, within Pf6N2E2_3840at 4473.041 kb on + strand, within Pf6N2E2_3840at 4473.332 kb on - strand, within Pf6N2E2_3841at 4473.332 kb on - strand, within Pf6N2E2_3841at 4473.376 kb on + strand, within Pf6N2E2_3841at 4473.377 kb on - strand, within Pf6N2E2_3841at 4473.377 kb on - strand, within Pf6N2E2_3841at 4473.377 kb on - strand, within Pf6N2E2_3841at 4473.377 kb on - strand, within Pf6N2E2_3841at 4473.379 kb on + strand, within Pf6N2E2_3841at 4473.379 kb on + strand, within Pf6N2E2_3841at 4473.380 kb on - strand, within Pf6N2E2_3841at 4473.380 kb on - strand, within Pf6N2E2_3841at 4473.380 kb on - strand, within Pf6N2E2_3841at 4473.380 kb on - strand, within Pf6N2E2_3841at 4473.394 kb on + strand, within Pf6N2E2_3841at 4473.395 kb on - strand, within Pf6N2E2_3841at 4473.606 kb on - strand, within Pf6N2E2_3841at 4473.606 kb on - strand, within Pf6N2E2_3841at 4473.844 kb on - strandat 4473.859 kb on + strandat 4473.859 kb on + strandat 4473.860 kb on - strandat 4473.860 kb on - strandat 4473.860 kb on - strandat 4474.068 kb on + strand, within Pf6N2E2_3842at 4474.068 kb on + strand, within Pf6N2E2_3842at 4474.146 kb on + strand, within Pf6N2E2_3842at 4474.146 kb on + strand, within Pf6N2E2_3842at 4474.147 kb on - strand, within Pf6N2E2_3842at 4474.147 kb on - strand, within Pf6N2E2_3842at 4474.147 kb on - strand, within Pf6N2E2_3842at 4474.216 kb on + strand, within Pf6N2E2_3842at 4474.423 kb on + strandat 4474.423 kb on + strandat 4474.424 kb on - strandat 4474.424 kb on - strandat 4474.424 kb on - strandat 4474.477 kb on - strandat 4474.478 kb on + strandat 4474.479 kb on - strandat 4474.479 kb on - strandat 4474.479 kb on - strandat 4474.479 kb on - strandat 4474.479 kb on - strandat 4474.479 kb on - strandat 4474.550 kb on + strandat 4474.562 kb on + strandat 4474.562 kb on + strandat 4474.562 kb on + strandat 4474.562 kb on + strandat 4474.562 kb on + strandat 4474.562 kb on + strandat 4474.562 kb on + strandat 4474.563 kb on - strandat 4474.563 kb on - strandat 4474.563 kb on - strandat 4474.563 kb on - strandat 4474.563 kb on - strandat 4474.563 kb on - strandat 4474.563 kb on - strandat 4474.718 kb on + strandat 4474.913 kb on + strand, within Pf6N2E2_3843at 4474.913 kb on + strand, within Pf6N2E2_3843at 4474.913 kb on + strand, within Pf6N2E2_3843at 4474.913 kb on + strand, within Pf6N2E2_3843at 4474.913 kb on + strand, within Pf6N2E2_3843at 4474.914 kb on - strand, within Pf6N2E2_3843at 4474.914 kb on - strand, within Pf6N2E2_3843at 4474.914 kb on - strand, within Pf6N2E2_3843at 4474.914 kb on - strand, within Pf6N2E2_3843at 4474.914 kb on - strand, within Pf6N2E2_3843at 4474.980 kb on + strand, within Pf6N2E2_3843at 4474.982 kb on + strand, within Pf6N2E2_3843at 4474.982 kb on + strand, within Pf6N2E2_3843at 4474.982 kb on + strand, within Pf6N2E2_3843at 4474.982 kb on + strand, within Pf6N2E2_3843at 4474.982 kb on + strand, within Pf6N2E2_3843at 4474.982 kb on + strand, within Pf6N2E2_3843at 4474.982 kb on + strand, within Pf6N2E2_3843at 4474.982 kb on + strand, within Pf6N2E2_3843at 4474.982 kb on + strand, within Pf6N2E2_3843at 4474.982 kb on + strand, within Pf6N2E2_3843at 4474.982 kb on + strand, within Pf6N2E2_3843at 4474.982 kb on + strand, within Pf6N2E2_3843at 4474.982 kb on + strand, within Pf6N2E2_3843at 4474.982 kb on + strand, within Pf6N2E2_3843at 4474.982 kb on + strand, within Pf6N2E2_3843at 4474.982 kb on + strand, within Pf6N2E2_3843at 4474.982 kb on + strand, within Pf6N2E2_3843at 4474.982 kb on + strand, within Pf6N2E2_3843at 4474.983 kb on - strand, within Pf6N2E2_3843at 4474.983 kb on - strand, within Pf6N2E2_3843at 4474.983 kb on - strand, within Pf6N2E2_3843at 4474.983 kb on - strand, within Pf6N2E2_3843at 4474.983 kb on - strand, within Pf6N2E2_3843at 4474.983 kb on - strand, within Pf6N2E2_3843at 4474.983 kb on - strand, within Pf6N2E2_3843at 4474.983 kb on - strand, within Pf6N2E2_3843at 4474.983 kb on - strand, within Pf6N2E2_3843at 4474.983 kb on - strand, within Pf6N2E2_3843at 4474.983 kb on - strand, within Pf6N2E2_3843at 4474.983 kb on - strand, within Pf6N2E2_3843at 4474.983 kb on - strand, within Pf6N2E2_3843at 4474.983 kb on - strand, within Pf6N2E2_3843at 4474.983 kb on - strand, within Pf6N2E2_3843at 4474.983 kb on - strand, within Pf6N2E2_3843at 4474.983 kb on - strand, within Pf6N2E2_3843at 4474.983 kb on - strand, within Pf6N2E2_3843at 4474.997 kb on + strand, within Pf6N2E2_3843at 4474.997 kb on + strand, within Pf6N2E2_3843at 4475.034 kb on - strand, within Pf6N2E2_3843at 4475.034 kb on - strand, within Pf6N2E2_3843at 4475.045 kb on + strand, within Pf6N2E2_3843at 4475.046 kb on - strand, within Pf6N2E2_3843at 4475.177 kb on + strand, within Pf6N2E2_3843at 4475.178 kb on - strand, within Pf6N2E2_3843at 4475.256 kb on - strand, within Pf6N2E2_3843at 4475.256 kb on - strand, within Pf6N2E2_3843at 4475.288 kb on + strand, within Pf6N2E2_3843at 4475.288 kb on + strand, within Pf6N2E2_3843at 4475.288 kb on + strand, within Pf6N2E2_3843at 4475.309 kb on + strand, within Pf6N2E2_3843at 4475.310 kb on - strand, within Pf6N2E2_3843at 4475.310 kb on - strand, within Pf6N2E2_3843at 4475.310 kb on - strand, within Pf6N2E2_3843

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 2
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4,472,864 - -1.9
4,472,864 - -6.5
4,472,890 - +0.1
4,472,924 + +0.1
4,472,925 - -4.1
4,472,925 - -2.4
4,472,925 - +1.1
4,472,930 + +0.1
4,473,003 + Pf6N2E2_3840 0.21 +1.1
4,473,004 - Pf6N2E2_3840 0.21 +1.1
4,473,004 - Pf6N2E2_3840 0.21 -0.5
4,473,038 + Pf6N2E2_3840 0.35 +1.1
4,473,039 - Pf6N2E2_3840 0.35 +1.1
4,473,039 - Pf6N2E2_3840 0.35 -1.1
4,473,039 - Pf6N2E2_3840 0.35 -0.5
4,473,039 - Pf6N2E2_3840 0.35 -0.5
4,473,039 - Pf6N2E2_3840 0.35 -0.9
4,473,039 - Pf6N2E2_3840 0.35 +1.1
4,473,041 + Pf6N2E2_3840 0.36 +0.1
4,473,041 + Pf6N2E2_3840 0.36 +0.1
4,473,041 + Pf6N2E2_3840 0.36 -0.9
4,473,332 - Pf6N2E2_3841 0.20 +1.1
4,473,332 - Pf6N2E2_3841 0.20 -3.4
4,473,376 + Pf6N2E2_3841 0.27 -2.4
4,473,377 - Pf6N2E2_3841 0.27 +1.1
4,473,377 - Pf6N2E2_3841 0.27 -0.5
4,473,377 - Pf6N2E2_3841 0.27 +0.1
4,473,377 - Pf6N2E2_3841 0.27 +1.1
4,473,379 + Pf6N2E2_3841 0.27 -5.0
4,473,379 + Pf6N2E2_3841 0.27 +1.1
4,473,380 - Pf6N2E2_3841 0.28 +1.1
4,473,380 - Pf6N2E2_3841 0.28 +0.1
4,473,380 - Pf6N2E2_3841 0.28 -2.9
4,473,380 - Pf6N2E2_3841 0.28 -4.0
4,473,394 + Pf6N2E2_3841 0.30 -1.2
4,473,395 - Pf6N2E2_3841 0.30 +1.1
4,473,606 - Pf6N2E2_3841 0.63 +1.1
4,473,606 - Pf6N2E2_3841 0.63 +1.1
4,473,844 - +1.1
4,473,859 + +1.1
4,473,859 + -2.2
4,473,860 - -3.0
4,473,860 - -6.3
4,473,860 - +0.1
4,474,068 + Pf6N2E2_3842 0.38 +0.1
4,474,068 + Pf6N2E2_3842 0.38 +1.1
4,474,146 + Pf6N2E2_3842 0.51 -0.9
4,474,146 + Pf6N2E2_3842 0.51 +1.1
4,474,147 - Pf6N2E2_3842 0.51 -6.3
4,474,147 - Pf6N2E2_3842 0.51 -6.0
4,474,147 - Pf6N2E2_3842 0.51 +1.1
4,474,216 + Pf6N2E2_3842 0.63 -1.5
4,474,423 + +1.1
4,474,423 + -1.2
4,474,424 - +1.1
4,474,424 - +0.1
4,474,424 - -0.9
4,474,477 - -0.5
4,474,478 + +1.1
4,474,479 - -1.5
4,474,479 - -0.5
4,474,479 - +0.5
4,474,479 - +1.1
4,474,479 - -1.5
4,474,479 - +1.1
4,474,550 + -1.9
4,474,562 + -1.7
4,474,562 + +0.1
4,474,562 + +1.1
4,474,562 + +1.1
4,474,562 + -0.3
4,474,562 + +0.1
4,474,562 + +1.1
4,474,563 - -0.9
4,474,563 - -0.8
4,474,563 - -0.5
4,474,563 - +1.1
4,474,563 - +1.1
4,474,563 - +1.1
4,474,563 - +0.1
4,474,718 + +0.1
4,474,913 + Pf6N2E2_3843 0.12 +1.1
4,474,913 + Pf6N2E2_3843 0.12 +1.1
4,474,913 + Pf6N2E2_3843 0.12 -1.2
4,474,913 + Pf6N2E2_3843 0.12 +1.1
4,474,913 + Pf6N2E2_3843 0.12 -0.5
4,474,914 - Pf6N2E2_3843 0.12 +1.1
4,474,914 - Pf6N2E2_3843 0.12 +0.1
4,474,914 - Pf6N2E2_3843 0.12 -0.5
4,474,914 - Pf6N2E2_3843 0.12 +1.1
4,474,914 - Pf6N2E2_3843 0.12 -0.5
4,474,980 + Pf6N2E2_3843 0.16 -0.5
4,474,982 + Pf6N2E2_3843 0.16 +1.1
4,474,982 + Pf6N2E2_3843 0.16 -0.8
4,474,982 + Pf6N2E2_3843 0.16 -1.0
4,474,982 + Pf6N2E2_3843 0.16 -0.9
4,474,982 + Pf6N2E2_3843 0.16 +1.1
4,474,982 + Pf6N2E2_3843 0.16 +1.1
4,474,982 + Pf6N2E2_3843 0.16 +1.1
4,474,982 + Pf6N2E2_3843 0.16 -0.7
4,474,982 + Pf6N2E2_3843 0.16 +1.1
4,474,982 + Pf6N2E2_3843 0.16 +0.5
4,474,982 + Pf6N2E2_3843 0.16 +1.1
4,474,982 + Pf6N2E2_3843 0.16 -0.5
4,474,982 + Pf6N2E2_3843 0.16 +0.1
4,474,982 + Pf6N2E2_3843 0.16 +0.1
4,474,982 + Pf6N2E2_3843 0.16 +1.1
4,474,982 + Pf6N2E2_3843 0.16 -1.2
4,474,982 + Pf6N2E2_3843 0.16 +1.1
4,474,982 + Pf6N2E2_3843 0.16 +1.1
4,474,983 - Pf6N2E2_3843 0.16 -1.1
4,474,983 - Pf6N2E2_3843 0.16 -0.5
4,474,983 - Pf6N2E2_3843 0.16 +0.1
4,474,983 - Pf6N2E2_3843 0.16 +1.1
4,474,983 - Pf6N2E2_3843 0.16 +0.1
4,474,983 - Pf6N2E2_3843 0.16 +0.1
4,474,983 - Pf6N2E2_3843 0.16 -1.6
4,474,983 - Pf6N2E2_3843 0.16 +0.1
4,474,983 - Pf6N2E2_3843 0.16 -1.2
4,474,983 - Pf6N2E2_3843 0.16 +0.1
4,474,983 - Pf6N2E2_3843 0.16 +0.1
4,474,983 - Pf6N2E2_3843 0.16 +1.1
4,474,983 - Pf6N2E2_3843 0.16 +1.1
4,474,983 - Pf6N2E2_3843 0.16 +0.1
4,474,983 - Pf6N2E2_3843 0.16 +1.4
4,474,983 - Pf6N2E2_3843 0.16 +1.1
4,474,983 - Pf6N2E2_3843 0.16 +0.1
4,474,983 - Pf6N2E2_3843 0.16 -1.0
4,474,997 + Pf6N2E2_3843 0.17 -0.3
4,474,997 + Pf6N2E2_3843 0.17 -0.1
4,475,034 - Pf6N2E2_3843 0.19 +1.1
4,475,034 - Pf6N2E2_3843 0.19 +1.1
4,475,045 + Pf6N2E2_3843 0.20 -0.5
4,475,046 - Pf6N2E2_3843 0.20 -0.9
4,475,177 + Pf6N2E2_3843 0.28 +1.1
4,475,178 - Pf6N2E2_3843 0.28 +0.1
4,475,256 - Pf6N2E2_3843 0.32 +0.1
4,475,256 - Pf6N2E2_3843 0.32 +1.1
4,475,288 + Pf6N2E2_3843 0.34 +0.1
4,475,288 + Pf6N2E2_3843 0.34 -0.7
4,475,288 + Pf6N2E2_3843 0.34 -0.9
4,475,309 + Pf6N2E2_3843 0.36 +0.1
4,475,310 - Pf6N2E2_3843 0.36 +0.1
4,475,310 - Pf6N2E2_3843 0.36 +0.1
4,475,310 - Pf6N2E2_3843 0.36 -0.5

Or see this region's nucleotide sequence