Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3701

Experiment: Ying_Others16 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3700 and Pf6N2E2_3701 overlap by 1 nucleotidesPf6N2E2_3701 and Pf6N2E2_3702 overlap by 4 nucleotidesPf6N2E2_3702 and Pf6N2E2_3703 are separated by 14 nucleotides Pf6N2E2_3700 - Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1), at 4,314,989 to 4,316,185 _3700 Pf6N2E2_3701 - Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family, at 4,316,185 to 4,317,189 _3701 Pf6N2E2_3702 - FIG00953907: hypothetical protein, at 4,317,186 to 4,317,485 _3702 Pf6N2E2_3703 - Oxidoreductase, short chain dehydrogenase/reductase family, at 4,317,500 to 4,318,249 _3703 Position (kb) 4316 4317 4318Strain fitness (log2 ratio) -2 -1 0 1at 4315.185 kb on + strand, within Pf6N2E2_3700at 4315.192 kb on - strand, within Pf6N2E2_3700at 4315.192 kb on - strand, within Pf6N2E2_3700at 4315.192 kb on - strand, within Pf6N2E2_3700at 4315.192 kb on - strand, within Pf6N2E2_3700at 4315.192 kb on - strand, within Pf6N2E2_3700at 4315.245 kb on + strand, within Pf6N2E2_3700at 4315.245 kb on + strand, within Pf6N2E2_3700at 4315.245 kb on + strand, within Pf6N2E2_3700at 4315.245 kb on + strand, within Pf6N2E2_3700at 4315.245 kb on + strand, within Pf6N2E2_3700at 4315.245 kb on + strand, within Pf6N2E2_3700at 4315.245 kb on + strand, within Pf6N2E2_3700at 4315.245 kb on + strand, within Pf6N2E2_3700at 4315.246 kb on - strand, within Pf6N2E2_3700at 4315.246 kb on - strand, within Pf6N2E2_3700at 4315.246 kb on - strand, within Pf6N2E2_3700at 4315.246 kb on - strand, within Pf6N2E2_3700at 4315.246 kb on - strand, within Pf6N2E2_3700at 4315.246 kb on - strand, within Pf6N2E2_3700at 4315.246 kb on - strand, within Pf6N2E2_3700at 4315.246 kb on - strand, within Pf6N2E2_3700at 4315.246 kb on - strand, within Pf6N2E2_3700at 4315.297 kb on + strand, within Pf6N2E2_3700at 4315.297 kb on + strand, within Pf6N2E2_3700at 4315.308 kb on + strand, within Pf6N2E2_3700at 4315.308 kb on + strand, within Pf6N2E2_3700at 4315.308 kb on + strand, within Pf6N2E2_3700at 4315.547 kb on + strand, within Pf6N2E2_3700at 4315.547 kb on + strand, within Pf6N2E2_3700at 4315.547 kb on + strand, within Pf6N2E2_3700at 4315.547 kb on + strand, within Pf6N2E2_3700at 4315.548 kb on - strand, within Pf6N2E2_3700at 4315.548 kb on - strand, within Pf6N2E2_3700at 4315.548 kb on - strand, within Pf6N2E2_3700at 4315.548 kb on - strand, within Pf6N2E2_3700at 4315.548 kb on - strand, within Pf6N2E2_3700at 4315.548 kb on - strand, within Pf6N2E2_3700at 4315.803 kb on + strand, within Pf6N2E2_3700at 4315.803 kb on + strand, within Pf6N2E2_3700at 4315.803 kb on + strand, within Pf6N2E2_3700at 4315.803 kb on + strand, within Pf6N2E2_3700at 4315.804 kb on - strand, within Pf6N2E2_3700at 4315.845 kb on + strand, within Pf6N2E2_3700at 4315.845 kb on + strand, within Pf6N2E2_3700at 4315.845 kb on + strand, within Pf6N2E2_3700at 4315.846 kb on - strand, within Pf6N2E2_3700at 4316.022 kb on + strand, within Pf6N2E2_3700at 4316.023 kb on - strand, within Pf6N2E2_3700at 4316.023 kb on - strand, within Pf6N2E2_3700at 4316.023 kb on - strand, within Pf6N2E2_3700at 4316.080 kb on - strandat 4316.274 kb on + strandat 4316.274 kb on + strandat 4316.274 kb on + strandat 4316.274 kb on + strandat 4316.274 kb on + strandat 4316.275 kb on - strandat 4316.279 kb on - strandat 4316.323 kb on + strand, within Pf6N2E2_3701at 4316.431 kb on + strand, within Pf6N2E2_3701at 4316.431 kb on + strand, within Pf6N2E2_3701at 4316.431 kb on + strand, within Pf6N2E2_3701at 4316.432 kb on - strand, within Pf6N2E2_3701at 4316.432 kb on - strand, within Pf6N2E2_3701at 4316.432 kb on - strand, within Pf6N2E2_3701at 4316.602 kb on + strand, within Pf6N2E2_3701at 4316.602 kb on + strand, within Pf6N2E2_3701at 4316.602 kb on + strand, within Pf6N2E2_3701at 4316.602 kb on + strand, within Pf6N2E2_3701at 4316.602 kb on + strand, within Pf6N2E2_3701at 4316.602 kb on + strand, within Pf6N2E2_3701at 4316.603 kb on - strand, within Pf6N2E2_3701at 4316.603 kb on - strand, within Pf6N2E2_3701at 4316.769 kb on + strand, within Pf6N2E2_3701at 4316.800 kb on + strand, within Pf6N2E2_3701at 4317.325 kb on + strand, within Pf6N2E2_3702at 4317.325 kb on + strand, within Pf6N2E2_3702at 4317.325 kb on + strand, within Pf6N2E2_3702at 4317.325 kb on + strand, within Pf6N2E2_3702at 4317.465 kb on + strandat 4317.465 kb on + strandat 4317.465 kb on + strandat 4317.755 kb on - strand, within Pf6N2E2_3703at 4317.865 kb on + strand, within Pf6N2E2_3703at 4317.865 kb on + strand, within Pf6N2E2_3703at 4317.865 kb on + strand, within Pf6N2E2_3703at 4317.865 kb on + strand, within Pf6N2E2_3703at 4317.865 kb on + strand, within Pf6N2E2_3703at 4317.865 kb on + strand, within Pf6N2E2_3703at 4317.865 kb on + strand, within Pf6N2E2_3703at 4317.865 kb on + strand, within Pf6N2E2_3703at 4317.865 kb on + strand, within Pf6N2E2_3703at 4317.865 kb on + strand, within Pf6N2E2_3703at 4317.865 kb on + strand, within Pf6N2E2_3703at 4317.865 kb on + strand, within Pf6N2E2_3703at 4317.866 kb on - strand, within Pf6N2E2_3703at 4317.866 kb on - strand, within Pf6N2E2_3703at 4317.866 kb on - strand, within Pf6N2E2_3703at 4317.866 kb on - strand, within Pf6N2E2_3703at 4317.866 kb on - strand, within Pf6N2E2_3703at 4317.866 kb on - strand, within Pf6N2E2_3703at 4317.866 kb on - strand, within Pf6N2E2_3703at 4318.174 kb on - strand, within Pf6N2E2_3703

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 2
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4,315,185 + Pf6N2E2_3700 0.16 +1.1
4,315,192 - Pf6N2E2_3700 0.17 +1.1
4,315,192 - Pf6N2E2_3700 0.17 -0.8
4,315,192 - Pf6N2E2_3700 0.17 +0.1
4,315,192 - Pf6N2E2_3700 0.17 -1.3
4,315,192 - Pf6N2E2_3700 0.17 -0.7
4,315,245 + Pf6N2E2_3700 0.21 -1.6
4,315,245 + Pf6N2E2_3700 0.21 -0.5
4,315,245 + Pf6N2E2_3700 0.21 +0.5
4,315,245 + Pf6N2E2_3700 0.21 -2.1
4,315,245 + Pf6N2E2_3700 0.21 -0.5
4,315,245 + Pf6N2E2_3700 0.21 +0.1
4,315,245 + Pf6N2E2_3700 0.21 -0.5
4,315,245 + Pf6N2E2_3700 0.21 +0.1
4,315,246 - Pf6N2E2_3700 0.21 +0.1
4,315,246 - Pf6N2E2_3700 0.21 -0.5
4,315,246 - Pf6N2E2_3700 0.21 -1.5
4,315,246 - Pf6N2E2_3700 0.21 +0.1
4,315,246 - Pf6N2E2_3700 0.21 -0.4
4,315,246 - Pf6N2E2_3700 0.21 -0.9
4,315,246 - Pf6N2E2_3700 0.21 +0.7
4,315,246 - Pf6N2E2_3700 0.21 +0.1
4,315,246 - Pf6N2E2_3700 0.21 -1.7
4,315,297 + Pf6N2E2_3700 0.26 -1.5
4,315,297 + Pf6N2E2_3700 0.26 -0.5
4,315,308 + Pf6N2E2_3700 0.27 +1.1
4,315,308 + Pf6N2E2_3700 0.27 -1.1
4,315,308 + Pf6N2E2_3700 0.27 -0.6
4,315,547 + Pf6N2E2_3700 0.47 +0.1
4,315,547 + Pf6N2E2_3700 0.47 -0.5
4,315,547 + Pf6N2E2_3700 0.47 +1.1
4,315,547 + Pf6N2E2_3700 0.47 +1.1
4,315,548 - Pf6N2E2_3700 0.47 -0.4
4,315,548 - Pf6N2E2_3700 0.47 -1.0
4,315,548 - Pf6N2E2_3700 0.47 -0.5
4,315,548 - Pf6N2E2_3700 0.47 +0.1
4,315,548 - Pf6N2E2_3700 0.47 +0.8
4,315,548 - Pf6N2E2_3700 0.47 -0.4
4,315,803 + Pf6N2E2_3700 0.68 +0.1
4,315,803 + Pf6N2E2_3700 0.68 +1.1
4,315,803 + Pf6N2E2_3700 0.68 -1.1
4,315,803 + Pf6N2E2_3700 0.68 -0.9
4,315,804 - Pf6N2E2_3700 0.68 -0.5
4,315,845 + Pf6N2E2_3700 0.72 -0.5
4,315,845 + Pf6N2E2_3700 0.72 +1.1
4,315,845 + Pf6N2E2_3700 0.72 +0.1
4,315,846 - Pf6N2E2_3700 0.72 -0.5
4,316,022 + Pf6N2E2_3700 0.86 +0.1
4,316,023 - Pf6N2E2_3700 0.86 +0.1
4,316,023 - Pf6N2E2_3700 0.86 -1.6
4,316,023 - Pf6N2E2_3700 0.86 +1.1
4,316,080 - +0.1
4,316,274 + +1.1
4,316,274 + +0.1
4,316,274 + -0.5
4,316,274 + +0.1
4,316,274 + +0.6
4,316,275 - +0.1
4,316,279 - -0.9
4,316,323 + Pf6N2E2_3701 0.14 +1.1
4,316,431 + Pf6N2E2_3701 0.24 +1.1
4,316,431 + Pf6N2E2_3701 0.24 -0.9
4,316,431 + Pf6N2E2_3701 0.24 +1.1
4,316,432 - Pf6N2E2_3701 0.25 +1.1
4,316,432 - Pf6N2E2_3701 0.25 -1.3
4,316,432 - Pf6N2E2_3701 0.25 +1.1
4,316,602 + Pf6N2E2_3701 0.41 +1.1
4,316,602 + Pf6N2E2_3701 0.41 -0.9
4,316,602 + Pf6N2E2_3701 0.41 +0.1
4,316,602 + Pf6N2E2_3701 0.41 +1.1
4,316,602 + Pf6N2E2_3701 0.41 +0.1
4,316,602 + Pf6N2E2_3701 0.41 +1.1
4,316,603 - Pf6N2E2_3701 0.42 +0.1
4,316,603 - Pf6N2E2_3701 0.42 +0.1
4,316,769 + Pf6N2E2_3701 0.58 -1.7
4,316,800 + Pf6N2E2_3701 0.61 +0.1
4,317,325 + Pf6N2E2_3702 0.46 -1.9
4,317,325 + Pf6N2E2_3702 0.46 +1.1
4,317,325 + Pf6N2E2_3702 0.46 +1.1
4,317,325 + Pf6N2E2_3702 0.46 +0.4
4,317,465 + +0.1
4,317,465 + -2.0
4,317,465 + +1.1
4,317,755 - Pf6N2E2_3703 0.34 -1.5
4,317,865 + Pf6N2E2_3703 0.49 +1.1
4,317,865 + Pf6N2E2_3703 0.49 -0.5
4,317,865 + Pf6N2E2_3703 0.49 +1.1
4,317,865 + Pf6N2E2_3703 0.49 +1.1
4,317,865 + Pf6N2E2_3703 0.49 +1.1
4,317,865 + Pf6N2E2_3703 0.49 +1.1
4,317,865 + Pf6N2E2_3703 0.49 +1.1
4,317,865 + Pf6N2E2_3703 0.49 -0.5
4,317,865 + Pf6N2E2_3703 0.49 -0.6
4,317,865 + Pf6N2E2_3703 0.49 +0.1
4,317,865 + Pf6N2E2_3703 0.49 +0.4
4,317,865 + Pf6N2E2_3703 0.49 +1.1
4,317,866 - Pf6N2E2_3703 0.49 -0.9
4,317,866 - Pf6N2E2_3703 0.49 +1.1
4,317,866 - Pf6N2E2_3703 0.49 -1.7
4,317,866 - Pf6N2E2_3703 0.49 +0.7
4,317,866 - Pf6N2E2_3703 0.49 +1.1
4,317,866 - Pf6N2E2_3703 0.49 -0.8
4,317,866 - Pf6N2E2_3703 0.49 +1.1
4,318,174 - Pf6N2E2_3703 0.90 -0.6

Or see this region's nucleotide sequence