Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3430

Experiment: Ying_Others16 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 2
3,985,488	-				+1.0
3,985,922	+		Pf6N2E2_3428	0.70	+1.0
3,985,922	+		Pf6N2E2_3428	0.70	+1.0
3,985,922	+		Pf6N2E2_3428	0.70	+1.0
3,985,923	-		Pf6N2E2_3428	0.70	-0.5
3,985,950	-		Pf6N2E2_3428	0.74	+0.0
3,986,005	-		Pf6N2E2_3428	0.84	-1.0
3,986,024	-		Pf6N2E2_3428	0.87	+0.0
3,986,024	-		Pf6N2E2_3428	0.87	+1.0
3,986,131	+				+1.0
3,986,131	+				+1.0
3,986,132	-				+1.0
3,986,132	-				-2.0
3,986,160	-				+0.0
3,986,195	+				-0.9
3,986,196	-				+1.0
3,986,198	+				+1.0
3,986,198	+				-0.3
3,986,198	+				+1.0
3,986,198	+				+0.0
3,986,198	+				-0.5
3,986,198	+				+1.0
3,986,198	+				-1.0
3,986,198	+				-0.5
3,986,199	-				-0.5
3,986,199	-				+0.0
3,986,199	-				+1.0
3,986,199	-				+1.0
3,986,199	-				+1.0
3,986,199	-				+1.0
3,986,199	-				+0.0
3,986,199	-				-1.0
3,986,199	-				-0.5
3,986,203	-				+1.0
3,986,203	-				+1.0
3,986,220	+				+1.0
3,986,221	-				+0.0
3,986,221	-				+1.0
3,986,241	+				+1.0
3,986,242	-				-2.1
3,986,271	-				+1.0
3,986,271	-				+1.0
3,986,289	+				+1.0
3,986,289	+				-2.2
3,986,323	+				+1.0
3,986,324	-				+1.0
3,986,324	-				+1.0
3,986,324	-				-0.5
3,986,324	-				+0.0
3,986,327	+				-0.8
3,986,328	-		Pf6N2E2_3429	0.10	-1.0
3,986,328	-		Pf6N2E2_3429	0.10	+1.0
3,986,384	+		Pf6N2E2_3429	0.53	+0.0
3,986,384	+		Pf6N2E2_3429	0.53	-0.8
3,986,385	-		Pf6N2E2_3429	0.54	+1.0
3,986,436	-				-0.5
3,986,447	+				+1.0
3,986,447	+				+0.0
3,986,448	-				-1.5
3,986,448	-				+0.4
3,986,448	-				+1.0
3,986,448	-				+1.0
3,986,448	-				+1.0
3,986,448	-				-0.5
3,986,700	-		Pf6N2E2_3430	0.11	+1.0
3,986,744	+		Pf6N2E2_3430	0.13	-0.8
3,986,744	+		Pf6N2E2_3430	0.13	-0.7
3,986,870	+		Pf6N2E2_3430	0.18	-0.5
3,986,870	+		Pf6N2E2_3430	0.18	+0.0
3,986,870	+		Pf6N2E2_3430	0.18	+0.0
3,986,871	-		Pf6N2E2_3430	0.18	-1.0
3,986,871	-		Pf6N2E2_3430	0.18	-1.0
3,986,871	-		Pf6N2E2_3430	0.18	+1.0
3,986,871	-		Pf6N2E2_3430	0.18	+1.0
3,987,000	-		Pf6N2E2_3430	0.24	-0.9
3,987,000	-		Pf6N2E2_3430	0.24	-1.6
3,987,000	-		Pf6N2E2_3430	0.24	-0.5
3,987,179	+		Pf6N2E2_3430	0.32	+1.0
3,987,179	+		Pf6N2E2_3430	0.32	-1.0
3,987,180	-		Pf6N2E2_3430	0.32	-0.5
3,987,488	+		Pf6N2E2_3430	0.46	+0.0
3,987,489	-		Pf6N2E2_3430	0.46	-1.0
3,987,489	-		Pf6N2E2_3430	0.46	+1.0
3,987,774	-		Pf6N2E2_3430	0.58	+1.0
3,987,882	+		Pf6N2E2_3430	0.63	+0.0
3,987,882	+		Pf6N2E2_3430	0.63	-0.6
3,987,883	-		Pf6N2E2_3430	0.63	-0.5
3,987,919	+		Pf6N2E2_3430	0.65	-0.5
3,988,283	+		Pf6N2E2_3430	0.81	+1.0
3,988,284	-		Pf6N2E2_3430	0.81	-0.5
3,988,284	-		Pf6N2E2_3430	0.81	+1.0
3,988,628	+				+1.0
3,988,629	-				+1.0
3,988,629	-				+1.0
3,988,629	-				+1.0
3,988,727	+				+1.0
3,988,727	+				-0.6
3,988,727	+				+0.0
3,988,727	+				-1.2
3,988,727	+				-1.0
3,988,728	-				+0.0
3,988,728	-				+1.0
3,989,039	+		Pf6N2E2_3431	0.20	+1.0
3,989,039	+		Pf6N2E2_3431	0.20	+1.0
3,989,039	+		Pf6N2E2_3431	0.20	-1.6
3,989,039	+		Pf6N2E2_3431	0.20	-0.9
3,989,039	+		Pf6N2E2_3431	0.20	+1.0
3,989,040	-		Pf6N2E2_3431	0.20	+0.5
3,989,040	-		Pf6N2E2_3431	0.20	-2.0
3,989,040	-		Pf6N2E2_3431	0.20	+0.4
3,989,040	-		Pf6N2E2_3431	0.20	-0.7
3,989,040	-		Pf6N2E2_3431	0.20	+1.0
3,989,040	-		Pf6N2E2_3431	0.20	-1.2
3,989,040	-		Pf6N2E2_3431	0.20	-1.0
3,989,148	-		Pf6N2E2_3431	0.32	+1.0
3,989,148	-		Pf6N2E2_3431	0.32	+1.0
3,989,148	-		Pf6N2E2_3431	0.32	-0.6
3,989,267	+		Pf6N2E2_3431	0.46	-0.6
3,989,292	-		Pf6N2E2_3431	0.49	+1.0
3,989,357	+		Pf6N2E2_3431	0.57	+1.0
3,989,357	+		Pf6N2E2_3431	0.57	+1.0
3,989,357	+		Pf6N2E2_3431	0.57	-1.0
3,989,357	+		Pf6N2E2_3431	0.57	-1.0
3,989,357	+		Pf6N2E2_3431	0.57	+0.0
3,989,357	+		Pf6N2E2_3431	0.57	-0.8
3,989,358	-		Pf6N2E2_3431	0.57	-1.0
3,989,358	-		Pf6N2E2_3431	0.57	+0.0
3,989,358	-		Pf6N2E2_3431	0.57	+0.0
3,989,392	+		Pf6N2E2_3431	0.61	+0.8
3,989,597	+		Pf6N2E2_3431	0.85	-0.6
3,989,685	+				-0.6
3,989,686	-				+1.0
3,989,686	-				+1.0
3,989,686	-				+1.0
3,989,693	+				+1.0