Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3381

Experiment: Ying_Others16 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 2
3,911,331	+		Pf6N2E2_3380	0.57	+0.0
3,911,331	+		Pf6N2E2_3380	0.57	-0.2
3,911,332	-		Pf6N2E2_3380	0.57	+1.0
3,911,332	-		Pf6N2E2_3380	0.57	+0.0
3,911,393	+		Pf6N2E2_3380	0.61	-1.4
3,911,393	+		Pf6N2E2_3380	0.61	+1.0
3,911,393	+		Pf6N2E2_3380	0.61	+0.0
3,911,394	-		Pf6N2E2_3380	0.61	+1.0
3,911,394	-		Pf6N2E2_3380	0.61	-0.9
3,911,394	-		Pf6N2E2_3380	0.61	+0.0
3,911,394	-		Pf6N2E2_3380	0.61	+1.0
3,911,556	+		Pf6N2E2_3380	0.70	+1.0
3,911,569	+		Pf6N2E2_3380	0.71	-0.5
3,911,570	-		Pf6N2E2_3380	0.71	+2.0
3,911,585	-		Pf6N2E2_3380	0.72	+0.0
3,911,669	+		Pf6N2E2_3380	0.77	+2.0
3,911,669	+		Pf6N2E2_3380	0.77	-0.8
3,911,779	+		Pf6N2E2_3380	0.84	-0.7
3,911,866	+		Pf6N2E2_3380	0.89	-0.4
3,911,985	+				-1.0
3,911,985	+				-0.5
3,911,986	-				-0.4
3,912,029	+				-1.0
3,912,056	+				+0.0
3,912,056	+				+0.0
3,912,056	+				-0.5
3,912,056	+				+1.0
3,912,056	+				+1.0
3,912,057	-				-0.5
3,912,057	-				-0.5
3,912,057	-				-2.1
3,912,057	-				-0.5
3,912,063	+				+1.0
3,912,064	-				-0.5
3,912,112	+				-0.5
3,912,112	+				-1.5
3,912,113	-				+0.0
3,912,113	-				-0.5
3,912,155	+				-0.4
3,912,155	+				-0.8
3,912,155	+				+0.0
3,912,155	+				-1.5
3,912,155	+				+1.0
3,912,155	+				+0.0
3,912,156	-				+0.0
3,912,156	-				-0.8
3,912,156	-				+0.0
3,912,157	+				-1.5
3,912,157	+				+0.0
3,912,158	-				-0.8
3,912,158	-				+0.0
3,912,158	-				+1.0
3,912,158	-				+1.0
3,912,225	-				-2.5
3,912,225	-				+1.0
3,912,226	+				+0.0
3,912,282	-				-1.1
3,912,309	-		Pf6N2E2_3381	0.12	+0.0
3,912,341	+		Pf6N2E2_3381	0.16	+0.0
3,912,342	-		Pf6N2E2_3381	0.16	-0.4
3,912,437	+		Pf6N2E2_3381	0.28	+1.0
3,912,437	+		Pf6N2E2_3381	0.28	+0.0
3,912,438	-		Pf6N2E2_3381	0.28	-0.7
3,912,438	-		Pf6N2E2_3381	0.28	-1.5
3,912,450	-		Pf6N2E2_3381	0.29	-0.7
3,912,557	+		Pf6N2E2_3381	0.42	-1.2
3,912,557	+		Pf6N2E2_3381	0.42	-0.4
3,912,623	+		Pf6N2E2_3381	0.50	-0.5
3,912,623	+		Pf6N2E2_3381	0.50	-0.5
3,912,623	+		Pf6N2E2_3381	0.50	+0.0
3,912,623	+		Pf6N2E2_3381	0.50	+0.0
3,912,624	-		Pf6N2E2_3381	0.50	+0.0
3,912,624	-		Pf6N2E2_3381	0.50	-2.3
3,912,624	-		Pf6N2E2_3381	0.50	-1.0
3,912,624	-		Pf6N2E2_3381	0.50	-1.7
3,912,624	-		Pf6N2E2_3381	0.50	-1.3
3,912,624	-		Pf6N2E2_3381	0.50	-1.0
3,912,624	-		Pf6N2E2_3381	0.50	+1.0
3,913,469	+		Pf6N2E2_3382	0.78	+1.0
3,913,469	+		Pf6N2E2_3382	0.78	+1.0
3,913,469	+		Pf6N2E2_3382	0.78	+1.0
3,913,469	+		Pf6N2E2_3382	0.78	-0.5
3,913,469	+		Pf6N2E2_3382	0.78	-0.3
3,913,470	-		Pf6N2E2_3382	0.78	+0.0
3,913,470	-		Pf6N2E2_3382	0.78	+0.0
3,913,470	-		Pf6N2E2_3382	0.78	-0.4
3,913,470	-		Pf6N2E2_3382	0.78	+1.0
3,913,470	-		Pf6N2E2_3382	0.78	+1.0
3,913,510	+		Pf6N2E2_3382	0.85	+1.0
3,913,510	+		Pf6N2E2_3382	0.85	-1.0
3,913,510	+		Pf6N2E2_3382	0.85	-1.1
3,913,510	+		Pf6N2E2_3382	0.85	-0.8
3,913,510	+		Pf6N2E2_3382	0.85	-0.9
3,913,510	+		Pf6N2E2_3382	0.85	-0.7
3,913,510	+		Pf6N2E2_3382	0.85	+0.0
3,913,511	-		Pf6N2E2_3382	0.85	+1.0
3,913,511	-		Pf6N2E2_3382	0.85	-0.5
3,913,511	-		Pf6N2E2_3382	0.85	+1.0
3,913,578	-				+2.6
3,913,578	-				+0.0
3,913,620	+				+1.0
3,913,620	+				-0.6
3,913,620	+				-0.5
3,913,621	-				+0.0
3,913,621	-				-0.5
3,913,621	-				+0.0
3,913,857	+		Pf6N2E2_3383	0.13	-1.0
3,913,857	+		Pf6N2E2_3383	0.13	-1.0
3,913,858	-		Pf6N2E2_3383	0.13	+0.0
3,913,858	-		Pf6N2E2_3383	0.13	+1.0
3,913,858	-		Pf6N2E2_3383	0.13	-0.1
3,914,006	+		Pf6N2E2_3383	0.34	+1.0
3,914,006	+		Pf6N2E2_3383	0.34	+0.0
3,914,007	-		Pf6N2E2_3383	0.34	-0.5
3,914,007	-		Pf6N2E2_3383	0.34	+1.0
3,914,025	+				+1.0
3,914,025	+		Pf6N2E2_3383	0.36	-0.9
3,914,026	-		Pf6N2E2_3383	0.36	+0.3
3,914,026	-		Pf6N2E2_3383	0.36	+1.0