Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2764

Experiment: Ying_Others16 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 2
3,252,766	-				+1.0
3,252,766	-				-0.6
3,252,766	-				+1.0
3,252,962	-		Pf6N2E2_2763	0.23	-0.0
3,253,044	+		Pf6N2E2_2763	0.32	-0.9
3,253,044	+		Pf6N2E2_2763	0.32	+1.0
3,253,044	+		Pf6N2E2_2763	0.32	-0.0
3,253,045	-		Pf6N2E2_2763	0.33	-0.6
3,253,045	-		Pf6N2E2_2763	0.33	-0.0
3,253,045	-		Pf6N2E2_2763	0.33	-0.4
3,253,164	+		Pf6N2E2_2763	0.47	-0.6
3,253,164	+		Pf6N2E2_2763	0.47	-0.0
3,253,165	-		Pf6N2E2_2763	0.47	+1.0
3,253,182	+		Pf6N2E2_2763	0.49	-1.0
3,253,183	-		Pf6N2E2_2763	0.49	-0.0
3,253,257	+		Pf6N2E2_2763	0.58	+1.0
3,253,257	+		Pf6N2E2_2763	0.58	-0.6
3,253,257	+		Pf6N2E2_2763	0.58	-0.6
3,253,258	-		Pf6N2E2_2763	0.59	-0.7
3,253,258	-		Pf6N2E2_2763	0.59	+1.0
3,253,345	+		Pf6N2E2_2763	0.69	+1.0
3,253,345	+		Pf6N2E2_2763	0.69	+1.0
3,253,345	+		Pf6N2E2_2763	0.69	-0.6
3,253,345	+		Pf6N2E2_2763	0.69	-0.0
3,253,345	+		Pf6N2E2_2763	0.69	+1.0
3,253,346	-		Pf6N2E2_2763	0.69	-1.0
3,253,346	-		Pf6N2E2_2763	0.69	-0.0
3,253,350	-		Pf6N2E2_2763	0.70	-0.0
3,253,350	-		Pf6N2E2_2763	0.70	-0.7
3,253,350	-		Pf6N2E2_2763	0.70	+1.0
3,253,395	+		Pf6N2E2_2763	0.75	+1.0
3,253,396	-		Pf6N2E2_2763	0.75	-0.0
3,253,396	-		Pf6N2E2_2763	0.75	-0.0
3,253,396	-		Pf6N2E2_2763	0.75	+1.0
3,253,396	-		Pf6N2E2_2763	0.75	-0.6
3,253,431	+		Pf6N2E2_2763	0.80	+1.0
3,253,431	+		Pf6N2E2_2763	0.80	+1.0
3,253,432	-		Pf6N2E2_2763	0.80	-0.9
3,253,432	-		Pf6N2E2_2763	0.80	+1.0
3,253,461	+		Pf6N2E2_2763	0.83	-0.0
3,253,461	+		Pf6N2E2_2763	0.83	-0.0
3,253,461	+		Pf6N2E2_2763	0.83	+1.0
3,253,462	-		Pf6N2E2_2763	0.83	+1.0
3,253,462	-		Pf6N2E2_2763	0.83	-0.0
3,253,462	-		Pf6N2E2_2763	0.83	-0.2
3,253,462	-		Pf6N2E2_2763	0.83	+1.0
3,253,462	-		Pf6N2E2_2763	0.83	-0.0
3,253,462	-		Pf6N2E2_2763	0.83	+1.0
3,253,467	+		Pf6N2E2_2763	0.84	+1.0
3,253,593	+				-0.6
3,253,594	-				+1.0
3,253,594	-				+1.0
3,253,596	+				-0.0
3,253,597	-				-0.0
3,253,597	-				-0.0
3,253,661	+				+1.0
3,253,696	+				-0.0
3,253,697	-				+1.0
3,253,797	-				+1.0
3,253,797	-				-0.0
3,253,797	-				+1.0
3,253,797	-				-0.0
3,253,797	-				-0.6
3,253,879	+		Pf6N2E2_2764	0.11	-0.6
3,253,880	-		Pf6N2E2_2764	0.11	-0.0
3,253,974	+		Pf6N2E2_2764	0.17	+1.0
3,253,974	+		Pf6N2E2_2764	0.17	+1.0
3,253,974	+		Pf6N2E2_2764	0.17	-0.6
3,253,975	-		Pf6N2E2_2764	0.18	-1.4
3,253,975	-		Pf6N2E2_2764	0.18	-0.0
3,254,255	+		Pf6N2E2_2764	0.38	-2.6
3,254,255	+		Pf6N2E2_2764	0.38	-0.0
3,254,256	-		Pf6N2E2_2764	0.38	-1.1
3,254,256	-		Pf6N2E2_2764	0.38	-1.0
3,254,256	-		Pf6N2E2_2764	0.38	-0.0
3,254,758	+		Pf6N2E2_2764	0.74	-0.6
3,254,759	-		Pf6N2E2_2764	0.74	-0.0
3,254,759	-		Pf6N2E2_2764	0.74	+1.0
3,254,866	+		Pf6N2E2_2764	0.82	+1.0
3,254,869	+		Pf6N2E2_2764	0.82	+1.0
3,254,869	+		Pf6N2E2_2764	0.82	-1.0
3,254,869	+		Pf6N2E2_2764	0.82	+1.0
3,254,869	+		Pf6N2E2_2764	0.82	-0.6
3,254,870	-		Pf6N2E2_2764	0.82	-2.4
3,254,870	-		Pf6N2E2_2764	0.82	-1.5
3,254,870	-		Pf6N2E2_2764	0.82	-0.9
3,254,870	-		Pf6N2E2_2764	0.82	-0.0
3,254,870	-		Pf6N2E2_2764	0.82	-1.3
3,254,870	-		Pf6N2E2_2764	0.82	+1.0
3,254,891	-		Pf6N2E2_2764	0.83	+1.0
3,254,900	+		Pf6N2E2_2764	0.84	+1.0
3,254,900	+		Pf6N2E2_2764	0.84	+0.1
3,254,900	+		Pf6N2E2_2764	0.84	-0.0
3,254,914	+		Pf6N2E2_2764	0.85	+1.0
3,254,914	+		Pf6N2E2_2764	0.85	+1.6
3,254,915	-		Pf6N2E2_2764	0.85	-1.0
3,254,998	+				+1.0
3,255,060	+				-0.8
3,255,060	+				+1.0
3,255,116	+				-0.7
3,255,116	+				+1.0
3,255,116	+				-0.0
3,255,116	+				+1.0
3,255,117	-				-1.0
3,255,209	+		Pf6N2E2_2765	0.14	-0.6
3,255,209	+		Pf6N2E2_2765	0.14	+0.5
3,255,209	+		Pf6N2E2_2765	0.14	-2.4
3,255,210	-		Pf6N2E2_2765	0.14	-2.0
3,255,210	-		Pf6N2E2_2765	0.14	-0.6
3,255,387	-		Pf6N2E2_2765	0.40	-1.0
3,255,387	-		Pf6N2E2_2765	0.40	-0.0
3,255,494	+		Pf6N2E2_2765	0.56	+1.0
3,255,495	-		Pf6N2E2_2765	0.57	-1.2
3,255,924	+				-0.0
3,255,931	-				-0.0
3,255,998	+				-1.2
3,255,998	+				+1.0
3,255,999	-				+1.0
3,255,999	-				+1.0
3,255,999	-				+1.0
3,255,999	-				+1.0
3,256,008	-				+0.8
3,256,019	-				-2.0
3,256,043	-				-0.0
3,256,043	-				-1.6