Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_120

Experiment: Ying_Others16 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_119 and Pf6N2E2_120 overlap by 4 nucleotidesPf6N2E2_120 and Pf6N2E2_121 are separated by 17 nucleotides Pf6N2E2_119 - Glycosyltransferase, at 166,100 to 167,203 _119 Pf6N2E2_120 - Tyrosine-protein kinase Wzc (EC 2.7.10.2), at 167,200 to 168,792 _120 Pf6N2E2_121 - probable polysaccharide biosynthesis protein, at 168,810 to 169,832 _121 Position (kb) 167 168 169Strain fitness (log2 ratio) -2 -1 0 1at 166.294 kb on + strand, within Pf6N2E2_119at 166.310 kb on + strand, within Pf6N2E2_119at 166.310 kb on + strand, within Pf6N2E2_119at 166.311 kb on - strand, within Pf6N2E2_119at 166.311 kb on - strand, within Pf6N2E2_119at 166.311 kb on - strand, within Pf6N2E2_119at 166.455 kb on + strand, within Pf6N2E2_119at 166.822 kb on + strand, within Pf6N2E2_119at 166.823 kb on - strand, within Pf6N2E2_119at 166.824 kb on + strand, within Pf6N2E2_119at 166.824 kb on + strand, within Pf6N2E2_119at 166.824 kb on + strand, within Pf6N2E2_119at 166.824 kb on + strand, within Pf6N2E2_119at 166.825 kb on - strand, within Pf6N2E2_119at 166.825 kb on - strand, within Pf6N2E2_119at 166.825 kb on - strand, within Pf6N2E2_119at 166.825 kb on - strand, within Pf6N2E2_119at 166.825 kb on - strand, within Pf6N2E2_119at 166.825 kb on - strand, within Pf6N2E2_119at 167.127 kb on + strandat 167.127 kb on + strandat 167.360 kb on + strand, within Pf6N2E2_120at 167.360 kb on + strand, within Pf6N2E2_120at 167.360 kb on + strand, within Pf6N2E2_120at 167.360 kb on + strand, within Pf6N2E2_120at 167.361 kb on - strand, within Pf6N2E2_120at 167.361 kb on - strand, within Pf6N2E2_120at 167.397 kb on + strand, within Pf6N2E2_120at 167.531 kb on + strand, within Pf6N2E2_120at 167.532 kb on - strand, within Pf6N2E2_120at 167.532 kb on - strand, within Pf6N2E2_120at 167.804 kb on + strand, within Pf6N2E2_120at 167.906 kb on + strand, within Pf6N2E2_120at 167.906 kb on + strand, within Pf6N2E2_120at 167.906 kb on + strand, within Pf6N2E2_120at 167.907 kb on - strand, within Pf6N2E2_120at 167.907 kb on - strand, within Pf6N2E2_120at 167.954 kb on + strand, within Pf6N2E2_120at 167.955 kb on - strand, within Pf6N2E2_120at 167.994 kb on - strand, within Pf6N2E2_120at 168.125 kb on + strand, within Pf6N2E2_120at 168.126 kb on - strand, within Pf6N2E2_120at 168.146 kb on + strand, within Pf6N2E2_120at 168.146 kb on + strand, within Pf6N2E2_120at 168.146 kb on + strand, within Pf6N2E2_120at 168.146 kb on + strand, within Pf6N2E2_120at 168.147 kb on - strand, within Pf6N2E2_120at 168.197 kb on + strand, within Pf6N2E2_120at 168.197 kb on + strand, within Pf6N2E2_120at 168.254 kb on + strand, within Pf6N2E2_120at 168.254 kb on + strand, within Pf6N2E2_120at 168.327 kb on + strand, within Pf6N2E2_120at 168.395 kb on + strand, within Pf6N2E2_120at 168.396 kb on - strand, within Pf6N2E2_120at 168.419 kb on + strand, within Pf6N2E2_120at 168.420 kb on - strand, within Pf6N2E2_120at 168.473 kb on + strand, within Pf6N2E2_120at 168.474 kb on - strand, within Pf6N2E2_120at 168.474 kb on - strand, within Pf6N2E2_120at 168.720 kb on + strandat 168.720 kb on + strandat 168.721 kb on - strandat 168.721 kb on - strandat 168.773 kb on + strandat 168.876 kb on + strandat 168.876 kb on + strandat 168.934 kb on + strand, within Pf6N2E2_121at 168.934 kb on + strand, within Pf6N2E2_121at 168.934 kb on + strand, within Pf6N2E2_121at 168.935 kb on - strand, within Pf6N2E2_121at 168.958 kb on + strand, within Pf6N2E2_121at 169.003 kb on + strand, within Pf6N2E2_121at 169.003 kb on + strand, within Pf6N2E2_121at 169.129 kb on + strand, within Pf6N2E2_121at 169.159 kb on - strand, within Pf6N2E2_121at 169.159 kb on - strand, within Pf6N2E2_121at 169.159 kb on - strand, within Pf6N2E2_121at 169.159 kb on - strand, within Pf6N2E2_121at 169.162 kb on + strand, within Pf6N2E2_121at 169.162 kb on + strand, within Pf6N2E2_121at 169.162 kb on + strand, within Pf6N2E2_121at 169.162 kb on + strand, within Pf6N2E2_121at 169.162 kb on + strand, within Pf6N2E2_121at 169.163 kb on - strand, within Pf6N2E2_121at 169.163 kb on - strand, within Pf6N2E2_121at 169.163 kb on - strand, within Pf6N2E2_121at 169.163 kb on - strand, within Pf6N2E2_121at 169.163 kb on - strand, within Pf6N2E2_121at 169.163 kb on - strand, within Pf6N2E2_121at 169.163 kb on - strand, within Pf6N2E2_121at 169.310 kb on - strand, within Pf6N2E2_121at 169.627 kb on + strand, within Pf6N2E2_121

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 2
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166,294 + Pf6N2E2_119 0.18 -1.1
166,310 + Pf6N2E2_119 0.19 -0.9
166,310 + Pf6N2E2_119 0.19 -1.1
166,311 - Pf6N2E2_119 0.19 +0.9
166,311 - Pf6N2E2_119 0.19 -0.4
166,311 - Pf6N2E2_119 0.19 -0.1
166,455 + Pf6N2E2_119 0.32 +0.9
166,822 + Pf6N2E2_119 0.65 -0.5
166,823 - Pf6N2E2_119 0.65 +0.3
166,824 + Pf6N2E2_119 0.66 -1.1
166,824 + Pf6N2E2_119 0.66 +0.9
166,824 + Pf6N2E2_119 0.66 -0.1
166,824 + Pf6N2E2_119 0.66 +0.3
166,825 - Pf6N2E2_119 0.66 -1.3
166,825 - Pf6N2E2_119 0.66 -0.8
166,825 - Pf6N2E2_119 0.66 -0.1
166,825 - Pf6N2E2_119 0.66 +0.9
166,825 - Pf6N2E2_119 0.66 +0.9
166,825 - Pf6N2E2_119 0.66 -0.1
167,127 + +0.9
167,127 + -0.1
167,360 + Pf6N2E2_120 0.10 -0.1
167,360 + Pf6N2E2_120 0.10 -0.1
167,360 + Pf6N2E2_120 0.10 +0.9
167,360 + Pf6N2E2_120 0.10 -0.1
167,361 - Pf6N2E2_120 0.10 +0.3
167,361 - Pf6N2E2_120 0.10 +0.3
167,397 + Pf6N2E2_120 0.12 +0.3
167,531 + Pf6N2E2_120 0.21 -0.1
167,532 - Pf6N2E2_120 0.21 -0.1
167,532 - Pf6N2E2_120 0.21 -0.5
167,804 + Pf6N2E2_120 0.38 +0.9
167,906 + Pf6N2E2_120 0.44 -0.5
167,906 + Pf6N2E2_120 0.44 +0.9
167,906 + Pf6N2E2_120 0.44 +0.9
167,907 - Pf6N2E2_120 0.44 -0.4
167,907 - Pf6N2E2_120 0.44 +0.9
167,954 + Pf6N2E2_120 0.47 +0.9
167,955 - Pf6N2E2_120 0.47 -0.3
167,994 - Pf6N2E2_120 0.50 -0.9
168,125 + Pf6N2E2_120 0.58 +0.9
168,126 - Pf6N2E2_120 0.58 -0.1
168,146 + Pf6N2E2_120 0.59 -0.9
168,146 + Pf6N2E2_120 0.59 -0.1
168,146 + Pf6N2E2_120 0.59 -1.2
168,146 + Pf6N2E2_120 0.59 -1.1
168,147 - Pf6N2E2_120 0.59 +0.9
168,197 + Pf6N2E2_120 0.63 -0.6
168,197 + Pf6N2E2_120 0.63 -0.7
168,254 + Pf6N2E2_120 0.66 -0.1
168,254 + Pf6N2E2_120 0.66 -0.7
168,327 + Pf6N2E2_120 0.71 +0.9
168,395 + Pf6N2E2_120 0.75 -0.3
168,396 - Pf6N2E2_120 0.75 -0.1
168,419 + Pf6N2E2_120 0.77 -0.1
168,420 - Pf6N2E2_120 0.77 -0.1
168,473 + Pf6N2E2_120 0.80 -0.7
168,474 - Pf6N2E2_120 0.80 +0.9
168,474 - Pf6N2E2_120 0.80 +0.9
168,720 + -0.7
168,720 + +0.9
168,721 - +0.9
168,721 - -0.1
168,773 + +0.9
168,876 + +0.9
168,876 + -0.1
168,934 + Pf6N2E2_121 0.12 -0.1
168,934 + Pf6N2E2_121 0.12 +0.9
168,934 + Pf6N2E2_121 0.12 +0.9
168,935 - Pf6N2E2_121 0.12 +0.9
168,958 + Pf6N2E2_121 0.14 +0.9
169,003 + Pf6N2E2_121 0.19 -0.1
169,003 + Pf6N2E2_121 0.19 +0.9
169,129 + Pf6N2E2_121 0.31 +0.9
169,159 - Pf6N2E2_121 0.34 +0.9
169,159 - Pf6N2E2_121 0.34 +0.9
169,159 - Pf6N2E2_121 0.34 -1.3
169,159 - Pf6N2E2_121 0.34 +0.9
169,162 + Pf6N2E2_121 0.34 +0.9
169,162 + Pf6N2E2_121 0.34 +0.9
169,162 + Pf6N2E2_121 0.34 -0.1
169,162 + Pf6N2E2_121 0.34 +0.9
169,162 + Pf6N2E2_121 0.34 -0.8
169,163 - Pf6N2E2_121 0.35 +0.9
169,163 - Pf6N2E2_121 0.35 -1.2
169,163 - Pf6N2E2_121 0.35 +0.9
169,163 - Pf6N2E2_121 0.35 +0.9
169,163 - Pf6N2E2_121 0.35 -0.9
169,163 - Pf6N2E2_121 0.35 +0.9
169,163 - Pf6N2E2_121 0.35 +0.9
169,310 - Pf6N2E2_121 0.49 -1.9
169,627 + Pf6N2E2_121 0.80 +0.9

Or see this region's nucleotide sequence