Experiment: Ying_Others16 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_10 and Pf6N2E2_11 are separated by 353 nucleotides Pf6N2E2_11 and Pf6N2E2_12 are separated by 144 nucleotides Pf6N2E2_12 and Pf6N2E2_13 are separated by 24 nucleotides
Pf6N2E2_10 - PvdE, pyoverdine ABC export system, fused ATPase and permease components, at 38,724 to 40,382
_10
Pf6N2E2_11 - PvdO, pyoverdine responsive serine/threonine kinase (predicted by OlgaV), at 40,736 to 40,888
_11
Pf6N2E2_12 - PvdO, pyoverdine responsive serine/threonine kinase (predicted by OlgaV), at 41,033 to 41,908
_12
Pf6N2E2_13 - Pyoverdin biosynthesis protein PvdN, putative aminotransferase, class V, at 41,933 to 43,213
_13
Position (kb) 41
42 Strain fitness (log2 ratio) -2
-1
0
1
2 at 40.106 kb on + strand, within Pf6N2E2_10 at 40.106 kb on + strand, within Pf6N2E2_10 at 40.106 kb on + strand, within Pf6N2E2_10 at 40.106 kb on + strand, within Pf6N2E2_10 at 40.106 kb on + strand, within Pf6N2E2_10 at 40.311 kb on + strand at 40.311 kb on + strand at 40.312 kb on - strand at 40.481 kb on + strand at 40.481 kb on + strand at 40.532 kb on + strand at 40.532 kb on + strand at 40.533 kb on - strand at 40.575 kb on - strand at 40.575 kb on - strand at 40.575 kb on - strand at 40.737 kb on + strand at 40.737 kb on + strand at 40.737 kb on + strand at 40.737 kb on + strand at 40.737 kb on + strand at 40.737 kb on + strand at 40.738 kb on - strand at 40.738 kb on - strand at 40.738 kb on - strand at 40.738 kb on - strand at 40.738 kb on - strand at 40.738 kb on - strand at 40.738 kb on - strand at 40.738 kb on - strand at 40.742 kb on - strand at 40.742 kb on - strand at 40.911 kb on + strand at 40.912 kb on - strand at 40.912 kb on - strand at 40.912 kb on - strand at 41.034 kb on + strand at 41.034 kb on + strand at 41.034 kb on + strand at 41.034 kb on + strand at 41.034 kb on + strand at 41.035 kb on - strand at 41.035 kb on - strand at 41.035 kb on - strand at 41.035 kb on - strand at 41.035 kb on - strand at 41.035 kb on - strand at 41.035 kb on - strand at 41.035 kb on - strand at 41.035 kb on - strand at 41.035 kb on - strand at 41.035 kb on - strand at 41.038 kb on + strand at 41.208 kb on + strand, within Pf6N2E2_12 at 41.209 kb on - strand, within Pf6N2E2_12 at 41.209 kb on - strand, within Pf6N2E2_12 at 41.221 kb on - strand, within Pf6N2E2_12 at 41.221 kb on - strand, within Pf6N2E2_12 at 41.241 kb on + strand, within Pf6N2E2_12 at 41.262 kb on + strand, within Pf6N2E2_12 at 41.331 kb on + strand, within Pf6N2E2_12 at 41.359 kb on - strand, within Pf6N2E2_12 at 41.484 kb on + strand, within Pf6N2E2_12 at 41.484 kb on + strand, within Pf6N2E2_12 at 41.484 kb on + strand, within Pf6N2E2_12 at 41.485 kb on - strand, within Pf6N2E2_12 at 41.535 kb on + strand, within Pf6N2E2_12 at 41.535 kb on + strand, within Pf6N2E2_12 at 41.535 kb on + strand, within Pf6N2E2_12 at 41.535 kb on + strand, within Pf6N2E2_12 at 41.535 kb on + strand, within Pf6N2E2_12 at 41.536 kb on - strand, within Pf6N2E2_12 at 41.536 kb on - strand, within Pf6N2E2_12 at 41.536 kb on - strand, within Pf6N2E2_12 at 41.623 kb on - strand, within Pf6N2E2_12 at 42.189 kb on + strand, within Pf6N2E2_13 at 42.360 kb on + strand, within Pf6N2E2_13 at 42.361 kb on - strand, within Pf6N2E2_13 at 42.361 kb on - strand, within Pf6N2E2_13 at 42.507 kb on + strand, within Pf6N2E2_13 at 42.508 kb on - strand, within Pf6N2E2_13 at 42.508 kb on - strand, within Pf6N2E2_13 at 42.508 kb on - strand, within Pf6N2E2_13 at 42.508 kb on - strand, within Pf6N2E2_13 at 42.822 kb on + strand, within Pf6N2E2_13 at 42.822 kb on + strand, within Pf6N2E2_13 at 42.822 kb on + strand, within Pf6N2E2_13 at 42.822 kb on + strand, within Pf6N2E2_13 at 42.822 kb on + strand, within Pf6N2E2_13 at 42.823 kb on - strand, within Pf6N2E2_13 at 42.823 kb on - strand, within Pf6N2E2_13
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 2 remove 40,106 + Pf6N2E2_10 0.83 +0.9 40,106 + Pf6N2E2_10 0.83 -0.5 40,106 + Pf6N2E2_10 0.83 -1.6 40,106 + Pf6N2E2_10 0.83 -0.1 40,106 + Pf6N2E2_10 0.83 +0.9 40,311 + +0.9 40,311 + -0.8 40,312 - -1.0 40,481 + +0.4 40,481 + -0.1 40,532 + -0.1 40,532 + -0.7 40,533 - +0.9 40,575 - -0.1 40,575 - -0.1 40,575 - -1.4 40,737 + -0.9 40,737 + +0.9 40,737 + +0.1 40,737 + -0.1 40,737 + -1.2 40,737 + +0.6 40,738 - +0.9 40,738 - +0.9 40,738 - +0.9 40,738 - +0.9 40,738 - -0.8 40,738 - +0.9 40,738 - -0.7 40,738 - +0.9 40,742 - -0.7 40,742 - +0.5 40,911 + +0.9 40,912 - -0.7 40,912 - -0.7 40,912 - -0.1 41,034 + +0.9 41,034 + +0.9 41,034 + +0.3 41,034 + +0.9 41,034 + -0.8 41,035 - -0.9 41,035 - -0.1 41,035 - +0.9 41,035 - -0.7 41,035 - -1.9 41,035 - -0.1 41,035 - +0.1 41,035 - +0.9 41,035 - -1.0 41,035 - -2.7 41,035 - -0.1 41,038 + -1.1 41,208 + Pf6N2E2_12 0.20 +0.9 41,209 - Pf6N2E2_12 0.20 +0.9 41,209 - Pf6N2E2_12 0.20 +0.9 41,221 - Pf6N2E2_12 0.21 -0.9 41,221 - Pf6N2E2_12 0.21 +0.9 41,241 + Pf6N2E2_12 0.24 +0.9 41,262 + Pf6N2E2_12 0.26 -1.1 41,331 + Pf6N2E2_12 0.34 +0.9 41,359 - Pf6N2E2_12 0.37 -0.9 41,484 + Pf6N2E2_12 0.51 +0.8 41,484 + Pf6N2E2_12 0.51 -0.1 41,484 + Pf6N2E2_12 0.51 +0.9 41,485 - Pf6N2E2_12 0.52 -0.1 41,535 + Pf6N2E2_12 0.57 +0.9 41,535 + Pf6N2E2_12 0.57 -0.1 41,535 + Pf6N2E2_12 0.57 -1.1 41,535 + Pf6N2E2_12 0.57 +1.9 41,535 + Pf6N2E2_12 0.57 +0.9 41,536 - Pf6N2E2_12 0.57 +0.9 41,536 - Pf6N2E2_12 0.57 +0.9 41,536 - Pf6N2E2_12 0.57 +0.9 41,623 - Pf6N2E2_12 0.67 +0.9 42,189 + Pf6N2E2_13 0.20 -1.0 42,360 + Pf6N2E2_13 0.33 +0.9 42,361 - Pf6N2E2_13 0.33 +0.9 42,361 - Pf6N2E2_13 0.33 -0.1 42,507 + Pf6N2E2_13 0.45 -1.5 42,508 - Pf6N2E2_13 0.45 +0.9 42,508 - Pf6N2E2_13 0.45 -0.7 42,508 - Pf6N2E2_13 0.45 -1.5 42,508 - Pf6N2E2_13 0.45 -0.1 42,822 + Pf6N2E2_13 0.69 -1.0 42,822 + Pf6N2E2_13 0.69 +0.3 42,822 + Pf6N2E2_13 0.69 -0.1 42,822 + Pf6N2E2_13 0.69 +0.1 42,822 + Pf6N2E2_13 0.69 -0.1 42,823 - Pf6N2E2_13 0.69 -1.3 42,823 - Pf6N2E2_13 0.69 +0.9
Or see this region's nucleotide sequence