Experiment: Ying_Others16 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_596 and Pf6N2E2_597 are separated by 120 nucleotides Pf6N2E2_597 and Pf6N2E2_598 are separated by 16 nucleotides Pf6N2E2_598 and Pf6N2E2_599 are separated by 93 nucleotides
Pf6N2E2_596 - Arsenic efflux pump protein, at 671,598 to 672,881
_596
Pf6N2E2_597 - FIG00953564: hypothetical protein, at 673,002 to 673,967
_597
Pf6N2E2_598 - hypothetical protein, at 673,984 to 674,145
_598
Pf6N2E2_599 - NAD kinase (EC 2.7.1.23), at 674,239 to 675,129
_599
Position (kb) 673
674 Strain fitness (log2 ratio) -2
-1
0
1 at 672.271 kb on - strand, within Pf6N2E2_596 at 672.465 kb on + strand, within Pf6N2E2_596 at 672.465 kb on + strand, within Pf6N2E2_596 at 672.465 kb on + strand, within Pf6N2E2_596 at 672.477 kb on + strand, within Pf6N2E2_596 at 672.507 kb on + strand, within Pf6N2E2_596 at 672.684 kb on + strand, within Pf6N2E2_596 at 672.684 kb on + strand, within Pf6N2E2_596 at 672.684 kb on + strand, within Pf6N2E2_596 at 672.798 kb on + strand at 672.798 kb on + strand at 672.801 kb on + strand at 672.801 kb on + strand at 672.801 kb on + strand at 672.801 kb on + strand at 672.801 kb on + strand at 672.802 kb on - strand at 672.802 kb on - strand at 672.802 kb on - strand at 672.940 kb on - strand at 673.048 kb on - strand at 673.339 kb on + strand, within Pf6N2E2_597 at 673.378 kb on - strand, within Pf6N2E2_597 at 673.536 kb on - strand, within Pf6N2E2_597 at 673.555 kb on + strand, within Pf6N2E2_597 at 673.555 kb on + strand, within Pf6N2E2_597 at 673.556 kb on - strand, within Pf6N2E2_597 at 673.556 kb on - strand, within Pf6N2E2_597 at 673.603 kb on - strand, within Pf6N2E2_597 at 673.718 kb on - strand, within Pf6N2E2_597 at 673.718 kb on - strand, within Pf6N2E2_597 at 674.016 kb on - strand, within Pf6N2E2_598 at 674.178 kb on + strand at 674.197 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 2 remove 672,271 - Pf6N2E2_596 0.52 -1.1 672,465 + Pf6N2E2_596 0.68 -0.1 672,465 + Pf6N2E2_596 0.68 +0.9 672,465 + Pf6N2E2_596 0.68 +0.9 672,477 + Pf6N2E2_596 0.68 +0.9 672,507 + Pf6N2E2_596 0.71 +0.9 672,684 + Pf6N2E2_596 0.85 +0.9 672,684 + Pf6N2E2_596 0.85 +0.9 672,684 + Pf6N2E2_596 0.85 +0.9 672,798 + -0.1 672,798 + -0.1 672,801 + +0.9 672,801 + +0.3 672,801 + -0.8 672,801 + -0.1 672,801 + +0.9 672,802 - -0.9 672,802 - -0.1 672,802 - +0.9 672,940 - +0.9 673,048 - -0.9 673,339 + Pf6N2E2_597 0.35 -2.3 673,378 - Pf6N2E2_597 0.39 -0.1 673,536 - Pf6N2E2_597 0.55 -0.7 673,555 + Pf6N2E2_597 0.57 +0.9 673,555 + Pf6N2E2_597 0.57 +0.9 673,556 - Pf6N2E2_597 0.57 -1.7 673,556 - Pf6N2E2_597 0.57 -1.0 673,603 - Pf6N2E2_597 0.62 -0.1 673,718 - Pf6N2E2_597 0.74 +0.9 673,718 - Pf6N2E2_597 0.74 +0.9 674,016 - Pf6N2E2_598 0.20 +0.9 674,178 + -2.5 674,197 + -0.1
Or see this region's nucleotide sequence