Experiment: Ying_Others16 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_571 and Pf6N2E2_572 are separated by 184 nucleotides Pf6N2E2_572 and Pf6N2E2_573 are separated by 67 nucleotides Pf6N2E2_573 and Pf6N2E2_574 are separated by 143 nucleotides Pf6N2E2_574 and Pf6N2E2_575 are separated by 218 nucleotides
Pf6N2E2_571 - ADA regulatory protein / Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63), at 645,326 to 646,369
_571
Pf6N2E2_572 - hypothetical protein, at 646,554 to 647,033
_572
Pf6N2E2_573 - Potassium uptake protein TrkH, at 647,101 to 648,555
_573
Pf6N2E2_574 - Transporter, LysE family, at 648,699 to 649,286
_574
Pf6N2E2_575 - Transcriptional regulator, AraC family, at 649,505 to 650,329
_575
Position (kb) 647
648
649 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 646.298 kb on - strand at 646.400 kb on + strand at 646.400 kb on + strand at 646.420 kb on + strand at 646.420 kb on + strand at 646.420 kb on + strand at 646.420 kb on + strand at 646.421 kb on - strand at 646.421 kb on - strand at 646.517 kb on - strand at 646.565 kb on + strand at 646.565 kb on + strand at 646.566 kb on - strand at 646.656 kb on + strand, within Pf6N2E2_572 at 646.656 kb on + strand, within Pf6N2E2_572 at 646.926 kb on - strand, within Pf6N2E2_572 at 646.973 kb on + strand, within Pf6N2E2_572 at 647.106 kb on - strand at 647.174 kb on - strand at 647.347 kb on - strand, within Pf6N2E2_573 at 647.347 kb on - strand, within Pf6N2E2_573 at 647.412 kb on - strand, within Pf6N2E2_573 at 647.467 kb on + strand, within Pf6N2E2_573 at 647.468 kb on - strand, within Pf6N2E2_573 at 647.480 kb on - strand, within Pf6N2E2_573 at 647.480 kb on - strand, within Pf6N2E2_573 at 647.546 kb on + strand, within Pf6N2E2_573 at 647.547 kb on - strand, within Pf6N2E2_573 at 647.547 kb on - strand, within Pf6N2E2_573 at 647.547 kb on - strand, within Pf6N2E2_573 at 647.579 kb on - strand, within Pf6N2E2_573 at 647.585 kb on + strand, within Pf6N2E2_573 at 647.585 kb on + strand, within Pf6N2E2_573 at 647.585 kb on + strand, within Pf6N2E2_573 at 647.586 kb on - strand, within Pf6N2E2_573 at 647.586 kb on - strand, within Pf6N2E2_573 at 647.790 kb on - strand, within Pf6N2E2_573 at 647.990 kb on + strand, within Pf6N2E2_573 at 647.990 kb on + strand, within Pf6N2E2_573 at 647.990 kb on + strand, within Pf6N2E2_573 at 647.990 kb on + strand, within Pf6N2E2_573 at 647.991 kb on - strand, within Pf6N2E2_573 at 647.991 kb on - strand, within Pf6N2E2_573 at 648.005 kb on + strand, within Pf6N2E2_573 at 648.005 kb on + strand, within Pf6N2E2_573 at 648.005 kb on + strand, within Pf6N2E2_573 at 648.005 kb on + strand, within Pf6N2E2_573 at 648.006 kb on - strand, within Pf6N2E2_573 at 648.006 kb on - strand, within Pf6N2E2_573 at 648.006 kb on - strand, within Pf6N2E2_573 at 648.006 kb on - strand, within Pf6N2E2_573 at 648.006 kb on - strand, within Pf6N2E2_573 at 648.006 kb on - strand, within Pf6N2E2_573 at 648.257 kb on + strand, within Pf6N2E2_573 at 648.257 kb on + strand, within Pf6N2E2_573 at 648.335 kb on + strand, within Pf6N2E2_573 at 648.335 kb on + strand, within Pf6N2E2_573 at 648.335 kb on + strand, within Pf6N2E2_573 at 648.335 kb on + strand, within Pf6N2E2_573 at 648.335 kb on + strand, within Pf6N2E2_573 at 648.335 kb on + strand, within Pf6N2E2_573 at 648.336 kb on - strand, within Pf6N2E2_573 at 648.336 kb on - strand, within Pf6N2E2_573 at 648.336 kb on - strand, within Pf6N2E2_573 at 648.336 kb on - strand, within Pf6N2E2_573 at 648.336 kb on - strand, within Pf6N2E2_573 at 648.336 kb on - strand, within Pf6N2E2_573 at 648.336 kb on - strand, within Pf6N2E2_573 at 648.336 kb on - strand, within Pf6N2E2_573 at 648.336 kb on - strand, within Pf6N2E2_573 at 648.336 kb on - strand, within Pf6N2E2_573 at 648.336 kb on - strand, within Pf6N2E2_573 at 648.336 kb on - strand, within Pf6N2E2_573 at 648.336 kb on - strand, within Pf6N2E2_573 at 648.336 kb on - strand, within Pf6N2E2_573 at 648.336 kb on - strand, within Pf6N2E2_573 at 648.455 kb on + strand at 648.455 kb on + strand at 648.455 kb on + strand at 648.455 kb on + strand at 648.455 kb on + strand at 648.455 kb on + strand at 648.455 kb on + strand at 648.455 kb on + strand at 648.456 kb on - strand at 648.456 kb on - strand at 648.456 kb on - strand at 648.555 kb on + strand at 648.555 kb on + strand at 648.555 kb on + strand at 648.555 kb on + strand at 648.555 kb on + strand at 648.555 kb on + strand at 648.555 kb on + strand at 648.556 kb on - strand at 648.556 kb on - strand at 648.556 kb on - strand at 648.556 kb on - strand at 648.587 kb on - strand at 648.659 kb on + strand at 648.659 kb on + strand at 648.682 kb on + strand at 648.682 kb on + strand at 648.683 kb on - strand at 648.683 kb on - strand at 648.683 kb on - strand at 648.693 kb on + strand at 648.746 kb on + strand at 648.746 kb on + strand at 648.747 kb on - strand at 648.747 kb on - strand at 649.020 kb on + strand, within Pf6N2E2_574 at 649.020 kb on + strand, within Pf6N2E2_574 at 649.134 kb on + strand, within Pf6N2E2_574 at 649.135 kb on - strand, within Pf6N2E2_574 at 649.135 kb on - strand, within Pf6N2E2_574 at 649.149 kb on + strand, within Pf6N2E2_574 at 649.205 kb on + strand, within Pf6N2E2_574 at 649.269 kb on + strand at 649.269 kb on + strand at 649.273 kb on + strand at 649.273 kb on + strand at 649.273 kb on + strand at 649.273 kb on + strand at 649.326 kb on + strand at 649.326 kb on + strand at 649.326 kb on + strand at 649.326 kb on + strand at 649.327 kb on - strand at 649.327 kb on - strand at 649.337 kb on + strand at 649.504 kb on - strand at 649.516 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 2 remove 646,298 - +0.9 646,400 + -1.1 646,400 + +0.9 646,420 + +0.9 646,420 + -1.5 646,420 + +0.9 646,420 + +0.9 646,421 - +0.9 646,421 - +0.9 646,517 - +0.9 646,565 + +0.9 646,565 + +0.3 646,566 - +0.9 646,656 + Pf6N2E2_572 0.21 +0.9 646,656 + Pf6N2E2_572 0.21 -0.6 646,926 - Pf6N2E2_572 0.78 +0.9 646,973 + Pf6N2E2_572 0.87 -0.1 647,106 - -0.5 647,174 - -0.7 647,347 - Pf6N2E2_573 0.17 +0.9 647,347 - Pf6N2E2_573 0.17 +0.9 647,412 - Pf6N2E2_573 0.21 -1.1 647,467 + Pf6N2E2_573 0.25 +0.9 647,468 - Pf6N2E2_573 0.25 +0.9 647,480 - Pf6N2E2_573 0.26 -2.1 647,480 - Pf6N2E2_573 0.26 +0.9 647,546 + Pf6N2E2_573 0.31 -0.1 647,547 - Pf6N2E2_573 0.31 +0.9 647,547 - Pf6N2E2_573 0.31 +0.9 647,547 - Pf6N2E2_573 0.31 -0.1 647,579 - Pf6N2E2_573 0.33 -0.1 647,585 + Pf6N2E2_573 0.33 -0.4 647,585 + Pf6N2E2_573 0.33 +0.9 647,585 + Pf6N2E2_573 0.33 +0.9 647,586 - Pf6N2E2_573 0.33 +0.9 647,586 - Pf6N2E2_573 0.33 -0.1 647,790 - Pf6N2E2_573 0.47 -0.1 647,990 + Pf6N2E2_573 0.61 +0.9 647,990 + Pf6N2E2_573 0.61 -0.1 647,990 + Pf6N2E2_573 0.61 -1.1 647,990 + Pf6N2E2_573 0.61 +0.9 647,991 - Pf6N2E2_573 0.61 +0.9 647,991 - Pf6N2E2_573 0.61 -0.1 648,005 + Pf6N2E2_573 0.62 -0.1 648,005 + Pf6N2E2_573 0.62 -0.7 648,005 + Pf6N2E2_573 0.62 -1.9 648,005 + Pf6N2E2_573 0.62 +0.1 648,006 - Pf6N2E2_573 0.62 -1.3 648,006 - Pf6N2E2_573 0.62 -2.9 648,006 - Pf6N2E2_573 0.62 -1.5 648,006 - Pf6N2E2_573 0.62 -0.8 648,006 - Pf6N2E2_573 0.62 -0.1 648,006 - Pf6N2E2_573 0.62 -2.3 648,257 + Pf6N2E2_573 0.79 +0.9 648,257 + Pf6N2E2_573 0.79 -0.1 648,335 + Pf6N2E2_573 0.85 +0.9 648,335 + Pf6N2E2_573 0.85 -1.2 648,335 + Pf6N2E2_573 0.85 +0.9 648,335 + Pf6N2E2_573 0.85 +0.9 648,335 + Pf6N2E2_573 0.85 -0.1 648,335 + Pf6N2E2_573 0.85 -0.5 648,336 - Pf6N2E2_573 0.85 +0.9 648,336 - Pf6N2E2_573 0.85 +0.3 648,336 - Pf6N2E2_573 0.85 -0.9 648,336 - Pf6N2E2_573 0.85 +0.9 648,336 - Pf6N2E2_573 0.85 +0.9 648,336 - Pf6N2E2_573 0.85 +0.9 648,336 - Pf6N2E2_573 0.85 +0.9 648,336 - Pf6N2E2_573 0.85 +0.3 648,336 - Pf6N2E2_573 0.85 +0.9 648,336 - Pf6N2E2_573 0.85 +0.9 648,336 - Pf6N2E2_573 0.85 -0.1 648,336 - Pf6N2E2_573 0.85 -1.6 648,336 - Pf6N2E2_573 0.85 -1.0 648,336 - Pf6N2E2_573 0.85 -0.5 648,336 - Pf6N2E2_573 0.85 -0.1 648,455 + +0.9 648,455 + -0.6 648,455 + +0.9 648,455 + -0.4 648,455 + +0.9 648,455 + -0.7 648,455 + +0.9 648,455 + +0.9 648,456 - +0.9 648,456 - -0.1 648,456 - -0.1 648,555 + -0.5 648,555 + -0.1 648,555 + -0.1 648,555 + +0.9 648,555 + -0.9 648,555 + +0.3 648,555 + +0.9 648,556 - +0.9 648,556 - +0.1 648,556 - +0.9 648,556 - -1.6 648,587 - +0.9 648,659 + -1.0 648,659 + +0.9 648,682 + -1.5 648,682 + +0.4 648,683 - +0.9 648,683 - -1.3 648,683 - +0.9 648,693 + -0.3 648,746 + +0.9 648,746 + -1.5 648,747 - -0.4 648,747 - -0.7 649,020 + Pf6N2E2_574 0.55 -0.1 649,020 + Pf6N2E2_574 0.55 +0.9 649,134 + Pf6N2E2_574 0.74 -1.9 649,135 - Pf6N2E2_574 0.74 -0.5 649,135 - Pf6N2E2_574 0.74 -1.9 649,149 + Pf6N2E2_574 0.77 +0.9 649,205 + Pf6N2E2_574 0.86 +0.9 649,269 + +0.9 649,269 + -0.1 649,273 + +0.9 649,273 + -0.9 649,273 + -0.1 649,273 + +0.9 649,326 + +0.9 649,326 + +0.9 649,326 + +0.9 649,326 + +0.9 649,327 - -0.7 649,327 - +0.9 649,337 + -1.1 649,504 - +0.9 649,516 - -2.7
Or see this region's nucleotide sequence