Experiment: Ying_Others16 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5060 and Pf6N2E2_5061 are separated by 319 nucleotides Pf6N2E2_5061 and Pf6N2E2_5062 overlap by 4 nucleotides Pf6N2E2_5062 and Pf6N2E2_5063 are separated by 286 nucleotides
Pf6N2E2_5060 - hypothetical protein, at 5,835,164 to 5,836,111
_5060
Pf6N2E2_5061 - Quinate/shikimate 5-dehydrogenase I delta (EC 1.1.1.25), at 5,836,431 to 5,837,288
_5061
Pf6N2E2_5062 - 3-dehydroquinate dehydratase II (EC 4.2.1.10), at 5,837,285 to 5,837,728
_5062
Pf6N2E2_5063 - tRNA (Uracil54-C5-)-methyltransferase (EC 2.1.1.35), at 5,838,015 to 5,839,094
_5063
Position (kb) 5836
5837
5838 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5836.307 kb on + strand at 5836.307 kb on + strand at 5836.307 kb on + strand at 5836.307 kb on + strand at 5836.312 kb on + strand at 5836.312 kb on + strand at 5836.312 kb on + strand at 5836.312 kb on + strand at 5836.312 kb on + strand at 5836.312 kb on + strand at 5836.402 kb on + strand at 5836.402 kb on + strand at 5836.402 kb on + strand at 5836.419 kb on + strand at 5836.600 kb on + strand, within Pf6N2E2_5061 at 5836.601 kb on - strand, within Pf6N2E2_5061 at 5836.601 kb on - strand, within Pf6N2E2_5061 at 5837.180 kb on - strand, within Pf6N2E2_5061 at 5837.180 kb on - strand, within Pf6N2E2_5061 at 5837.180 kb on - strand, within Pf6N2E2_5061 at 5837.273 kb on + strand at 5837.273 kb on + strand at 5837.288 kb on + strand at 5837.289 kb on - strand at 5837.444 kb on + strand, within Pf6N2E2_5062 at 5837.445 kb on - strand, within Pf6N2E2_5062 at 5837.658 kb on + strand, within Pf6N2E2_5062 at 5837.658 kb on + strand, within Pf6N2E2_5062 at 5837.658 kb on + strand, within Pf6N2E2_5062 at 5837.659 kb on - strand, within Pf6N2E2_5062 at 5837.659 kb on - strand, within Pf6N2E2_5062 at 5837.795 kb on - strand at 5837.802 kb on + strand at 5837.815 kb on + strand at 5837.815 kb on + strand at 5837.816 kb on - strand at 5837.816 kb on - strand at 5837.837 kb on + strand at 5837.837 kb on + strand at 5837.837 kb on + strand at 5837.837 kb on + strand at 5837.837 kb on + strand at 5837.838 kb on - strand at 5837.838 kb on - strand at 5838.016 kb on + strand at 5838.047 kb on + strand at 5838.047 kb on + strand at 5838.048 kb on - strand at 5838.048 kb on - strand at 5838.048 kb on - strand at 5838.048 kb on - strand at 5838.089 kb on + strand at 5838.090 kb on - strand at 5838.154 kb on + strand, within Pf6N2E2_5063 at 5838.154 kb on + strand, within Pf6N2E2_5063 at 5838.154 kb on + strand, within Pf6N2E2_5063 at 5838.154 kb on + strand, within Pf6N2E2_5063 at 5838.155 kb on - strand, within Pf6N2E2_5063 at 5838.155 kb on - strand, within Pf6N2E2_5063 at 5838.155 kb on - strand, within Pf6N2E2_5063 at 5838.155 kb on - strand, within Pf6N2E2_5063
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 2 remove 5,836,307 + -0.5 5,836,307 + +0.1 5,836,307 + +0.1 5,836,307 + +1.1 5,836,312 + -1.0 5,836,312 + -0.5 5,836,312 + +1.1 5,836,312 + +0.1 5,836,312 + -1.7 5,836,312 + -2.1 5,836,402 + -1.2 5,836,402 + -0.5 5,836,402 + +0.1 5,836,419 + +0.1 5,836,600 + Pf6N2E2_5061 0.20 +1.1 5,836,601 - Pf6N2E2_5061 0.20 +1.1 5,836,601 - Pf6N2E2_5061 0.20 -1.2 5,837,180 - Pf6N2E2_5061 0.87 +0.1 5,837,180 - Pf6N2E2_5061 0.87 +1.1 5,837,180 - Pf6N2E2_5061 0.87 -0.7 5,837,273 + +0.1 5,837,273 + +0.1 5,837,288 + +0.1 5,837,289 - -0.8 5,837,444 + Pf6N2E2_5062 0.36 -0.6 5,837,445 - Pf6N2E2_5062 0.36 +1.1 5,837,658 + Pf6N2E2_5062 0.84 -0.9 5,837,658 + Pf6N2E2_5062 0.84 +1.1 5,837,658 + Pf6N2E2_5062 0.84 +0.1 5,837,659 - Pf6N2E2_5062 0.84 -0.9 5,837,659 - Pf6N2E2_5062 0.84 -0.6 5,837,795 - +0.1 5,837,802 + +0.8 5,837,815 + +0.1 5,837,815 + +1.1 5,837,816 - +0.1 5,837,816 - +0.1 5,837,837 + -0.8 5,837,837 + -0.6 5,837,837 + +0.1 5,837,837 + +1.1 5,837,837 + -3.1 5,837,838 - +1.1 5,837,838 - +0.5 5,838,016 + +1.1 5,838,047 + +1.1 5,838,047 + +1.1 5,838,048 - +1.1 5,838,048 - +1.1 5,838,048 - +1.1 5,838,048 - -0.5 5,838,089 + +1.1 5,838,090 - -0.5 5,838,154 + Pf6N2E2_5063 0.13 +1.1 5,838,154 + Pf6N2E2_5063 0.13 +1.1 5,838,154 + Pf6N2E2_5063 0.13 -1.5 5,838,154 + Pf6N2E2_5063 0.13 +0.6 5,838,155 - Pf6N2E2_5063 0.13 +1.1 5,838,155 - Pf6N2E2_5063 0.13 -1.2 5,838,155 - Pf6N2E2_5063 0.13 -0.5 5,838,155 - Pf6N2E2_5063 0.13 +1.1
Or see this region's nucleotide sequence