Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2801

Experiment: Ying_Others16 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 2
3,286,102	+		Pf6N2E2_2800	0.25	-0.7
3,286,252	+		Pf6N2E2_2800	0.37	+0.0
3,286,366	+		Pf6N2E2_2800	0.46	+1.0
3,286,366	+		Pf6N2E2_2800	0.46	+1.0
3,286,366	+		Pf6N2E2_2800	0.46	+1.0
3,286,367	-		Pf6N2E2_2800	0.46	+1.0
3,286,385	-		Pf6N2E2_2800	0.47	+0.0
3,286,423	+		Pf6N2E2_2800	0.50	+1.0
3,286,423	+		Pf6N2E2_2800	0.50	-0.5
3,286,423	+		Pf6N2E2_2800	0.50	+0.0
3,286,423	+		Pf6N2E2_2800	0.50	+1.0
3,286,424	-		Pf6N2E2_2800	0.51	-0.8
3,286,424	-		Pf6N2E2_2800	0.51	+0.0
3,286,424	-		Pf6N2E2_2800	0.51	+0.0
3,286,424	-		Pf6N2E2_2800	0.51	+1.0
3,286,424	-		Pf6N2E2_2800	0.51	+0.0
3,286,700	+		Pf6N2E2_2800	0.73	+0.0
3,286,752	+		Pf6N2E2_2800	0.77	+1.0
3,286,752	+		Pf6N2E2_2800	0.77	-0.6
3,286,752	+		Pf6N2E2_2800	0.77	+0.0
3,286,752	+		Pf6N2E2_2800	0.77	+1.0
3,286,752	+		Pf6N2E2_2800	0.77	+0.0
3,286,752	+		Pf6N2E2_2800	0.77	+1.0
3,286,753	-		Pf6N2E2_2800	0.77	+1.0
3,286,753	-		Pf6N2E2_2800	0.77	+1.6
3,286,753	-		Pf6N2E2_2800	0.77	+0.0
3,286,753	-		Pf6N2E2_2800	0.77	+1.0
3,286,753	-		Pf6N2E2_2800	0.77	+1.0
3,286,753	-		Pf6N2E2_2800	0.77	+1.0
3,286,753	-		Pf6N2E2_2800	0.77	-0.6
3,286,879	+		Pf6N2E2_2800	0.87	+0.4
3,286,879	+		Pf6N2E2_2800	0.87	+0.0
3,287,059	+				+1.0
3,287,059	+				+1.0
3,287,059	+				+0.0
3,287,059	+				+0.0
3,287,060	-				+1.0
3,287,060	-				+1.0
3,287,060	-				-0.7
3,287,084	-				+1.0
3,287,084	-				+0.0
3,287,117	+				-2.8
3,287,118	-				+1.0
3,287,118	-				+1.0
3,287,118	-				+1.0
3,287,192	+		Pf6N2E2_2801	0.12	-1.0
3,287,192	+		Pf6N2E2_2801	0.12	-1.6
3,287,193	-		Pf6N2E2_2801	0.12	+0.0
3,287,285	+		Pf6N2E2_2801	0.20	+0.0
3,287,285	+		Pf6N2E2_2801	0.20	+0.9
3,287,286	-		Pf6N2E2_2801	0.20	+1.0
3,287,486	+		Pf6N2E2_2801	0.38	-0.5
3,287,486	+		Pf6N2E2_2801	0.38	-1.0
3,287,487	-		Pf6N2E2_2801	0.38	+1.0
3,287,636	+		Pf6N2E2_2801	0.51	+0.7
3,287,637	-		Pf6N2E2_2801	0.51	+1.0
3,287,637	-		Pf6N2E2_2801	0.51	+1.0
3,287,771	+		Pf6N2E2_2801	0.62	+1.0
3,287,771	+		Pf6N2E2_2801	0.62	+1.0
3,287,772	-		Pf6N2E2_2801	0.62	+1.0
3,287,804	+		Pf6N2E2_2801	0.65	-1.3
3,287,804	+		Pf6N2E2_2801	0.65	+0.0
3,287,804	+		Pf6N2E2_2801	0.65	+1.0
3,287,804	+		Pf6N2E2_2801	0.65	+0.0
3,287,805	-		Pf6N2E2_2801	0.65	+1.0
3,287,838	+		Pf6N2E2_2801	0.68	+0.3
3,287,839	-		Pf6N2E2_2801	0.68	+0.0
3,287,993	+		Pf6N2E2_2801	0.81	-0.8
3,287,993	+		Pf6N2E2_2801	0.81	-0.0
3,287,993	+		Pf6N2E2_2801	0.81	+0.0
3,287,994	-		Pf6N2E2_2801	0.81	+1.0
3,288,045	-		Pf6N2E2_2801	0.86	+1.0
3,288,219	-				+1.0
3,288,344	+				-0.3
3,288,344	+				+1.0
3,288,344	+				+1.0
3,288,345	-				-0.8
3,288,345	-				+0.4
3,288,353	+				+1.0
3,288,353	+				-2.1
3,288,353	+				-1.3
3,288,353	+				-1.0
3,288,354	-				-0.1
3,288,455	-				+1.0
3,288,469	+		Pf6N2E2_2802	0.10	-1.5
3,288,469	+		Pf6N2E2_2802	0.10	-0.9
3,288,470	-		Pf6N2E2_2802	0.10	+1.0
3,288,574	-		Pf6N2E2_2802	0.19	-1.3
3,288,686	+		Pf6N2E2_2802	0.29	-1.6
3,288,686	+		Pf6N2E2_2802	0.29	+1.0
3,288,686	+		Pf6N2E2_2802	0.29	-2.4
3,288,686	+		Pf6N2E2_2802	0.29	-1.2
3,288,686	+		Pf6N2E2_2802	0.29	+0.0
3,288,687	-		Pf6N2E2_2802	0.29	+1.0
3,288,687	-		Pf6N2E2_2802	0.29	+0.0
3,288,687	-		Pf6N2E2_2802	0.29	-1.3
3,288,771	-		Pf6N2E2_2802	0.36	+1.0
3,288,771	-		Pf6N2E2_2802	0.36	-0.6
3,288,896	+		Pf6N2E2_2802	0.47	+1.0
3,288,896	+		Pf6N2E2_2802	0.47	+0.0
3,288,896	+		Pf6N2E2_2802	0.47	-0.3
3,288,896	+		Pf6N2E2_2802	0.47	-1.2
3,288,896	+		Pf6N2E2_2802	0.47	+0.0
3,288,896	+		Pf6N2E2_2802	0.47	+0.0
3,288,896	+		Pf6N2E2_2802	0.47	+1.0
3,288,896	+		Pf6N2E2_2802	0.47	-1.1
3,288,897	-		Pf6N2E2_2802	0.47	+1.0
3,288,897	-		Pf6N2E2_2802	0.47	+1.0
3,289,145	+		Pf6N2E2_2802	0.69	+0.0
3,289,146	-		Pf6N2E2_2802	0.69	+1.0
3,289,146	-		Pf6N2E2_2802	0.69	+1.0
3,289,146	-		Pf6N2E2_2802	0.69	-1.7