Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_115

Experiment: Ying_Others16 rep A; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_114 and Pf6N2E2_115 overlap by 4 nucleotidesPf6N2E2_115 and Pf6N2E2_116 are separated by 12 nucleotides Pf6N2E2_114 - Polysaccharide biosynthesis protein, at 160,330 to 161,634 _114 Pf6N2E2_115 - FIG00958408: hypothetical protein, at 161,631 to 162,635 _115 Pf6N2E2_116 - Glycosyltransferase, at 162,648 to 163,784 _116 Position (kb) 161 162 163Strain fitness (log2 ratio) -2 -1 0 1at 161.390 kb on - strand, within Pf6N2E2_114at 161.618 kb on + strandat 161.741 kb on - strand, within Pf6N2E2_115at 161.828 kb on - strand, within Pf6N2E2_115at 161.833 kb on + strand, within Pf6N2E2_115at 161.833 kb on + strand, within Pf6N2E2_115at 161.833 kb on + strand, within Pf6N2E2_115at 161.833 kb on + strand, within Pf6N2E2_115at 161.834 kb on - strand, within Pf6N2E2_115at 161.834 kb on - strand, within Pf6N2E2_115at 161.834 kb on - strand, within Pf6N2E2_115at 161.834 kb on - strand, within Pf6N2E2_115at 161.834 kb on - strand, within Pf6N2E2_115at 161.834 kb on - strand, within Pf6N2E2_115at 161.834 kb on - strand, within Pf6N2E2_115at 161.834 kb on - strand, within Pf6N2E2_115at 161.834 kb on - strand, within Pf6N2E2_115at 162.085 kb on + strand, within Pf6N2E2_115at 162.086 kb on - strand, within Pf6N2E2_115at 162.086 kb on - strandat 162.278 kb on + strand, within Pf6N2E2_115at 162.812 kb on - strand, within Pf6N2E2_116at 162.844 kb on + strand, within Pf6N2E2_116at 162.949 kb on + strand, within Pf6N2E2_116at 163.091 kb on - strand, within Pf6N2E2_116at 163.091 kb on - strand, within Pf6N2E2_116at 163.256 kb on - strand, within Pf6N2E2_116at 163.256 kb on - strand, within Pf6N2E2_116at 163.579 kb on + strand, within Pf6N2E2_116

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 2
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161,390 - Pf6N2E2_114 0.81 -0.6
161,618 + +0.9
161,741 - Pf6N2E2_115 0.11 -1.1
161,828 - Pf6N2E2_115 0.20 -2.4
161,833 + Pf6N2E2_115 0.20 -1.4
161,833 + Pf6N2E2_115 0.20 -0.1
161,833 + Pf6N2E2_115 0.20 -0.1
161,833 + Pf6N2E2_115 0.20 +0.9
161,834 - Pf6N2E2_115 0.20 -0.6
161,834 - Pf6N2E2_115 0.20 -0.4
161,834 - Pf6N2E2_115 0.20 -0.1
161,834 - Pf6N2E2_115 0.20 -1.1
161,834 - Pf6N2E2_115 0.20 +0.9
161,834 - Pf6N2E2_115 0.20 +0.9
161,834 - Pf6N2E2_115 0.20 -1.0
161,834 - Pf6N2E2_115 0.20 -0.1
161,834 - Pf6N2E2_115 0.20 -0.5
162,085 + Pf6N2E2_115 0.45 -0.9
162,086 - Pf6N2E2_115 0.45 -1.2
162,086 - +0.9
162,278 + Pf6N2E2_115 0.64 +0.9
162,812 - Pf6N2E2_116 0.14 +0.9
162,844 + Pf6N2E2_116 0.17 -0.1
162,949 + Pf6N2E2_116 0.26 +0.9
163,091 - Pf6N2E2_116 0.39 +0.9
163,091 - Pf6N2E2_116 0.39 -1.1
163,256 - Pf6N2E2_116 0.53 -0.2
163,256 - Pf6N2E2_116 0.53 -0.1
163,579 + Pf6N2E2_116 0.82 -0.1

Or see this region's nucleotide sequence