Experiment: Ying_Nucleobase14 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_960 and Pf6N2E2_961 overlap by 4 nucleotides Pf6N2E2_961 and Pf6N2E2_962 overlap by 4 nucleotides Pf6N2E2_962 and Pf6N2E2_963 are separated by 14 nucleotides Pf6N2E2_963 and Pf6N2E2_964 are separated by 72 nucleotides
Pf6N2E2_960 - Type IV secretory pathway, VirD4 components, at 1,130,844 to 1,132,964
_960
Pf6N2E2_961 - FIG00954712: hypothetical protein, at 1,132,961 to 1,133,476
_961
Pf6N2E2_962 - Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains), at 1,133,473 to 1,133,988
_962
Pf6N2E2_963 - probable exported protein STY4558, at 1,134,003 to 1,134,659
_963
Pf6N2E2_964 - Methyl-accepting chemotaxis protein, at 1,134,732 to 1,135,403
_964
Position (kb) 1133
1134 Strain fitness (log2 ratio) -1
0
1
2 at 1132.577 kb on + strand, within Pf6N2E2_960 at 1132.577 kb on + strand, within Pf6N2E2_960 at 1132.578 kb on - strand, within Pf6N2E2_960 at 1132.579 kb on + strand, within Pf6N2E2_960 at 1132.579 kb on + strand, within Pf6N2E2_960 at 1132.579 kb on + strand, within Pf6N2E2_960 at 1132.579 kb on + strand, within Pf6N2E2_960 at 1132.579 kb on + strand, within Pf6N2E2_960 at 1132.579 kb on + strand, within Pf6N2E2_960 at 1132.600 kb on + strand, within Pf6N2E2_960 at 1132.601 kb on - strand, within Pf6N2E2_960 at 1132.804 kb on + strand at 1132.862 kb on - strand at 1132.862 kb on - strand at 1132.897 kb on - strand at 1132.903 kb on + strand at 1132.903 kb on + strand at 1132.903 kb on + strand at 1132.903 kb on + strand at 1132.904 kb on - strand at 1133.189 kb on + strand, within Pf6N2E2_961 at 1133.207 kb on + strand, within Pf6N2E2_961 at 1133.345 kb on + strand, within Pf6N2E2_961 at 1133.458 kb on + strand at 1133.459 kb on - strand at 1133.465 kb on + strand at 1133.812 kb on + strand, within Pf6N2E2_962 at 1133.812 kb on + strand, within Pf6N2E2_962 at 1133.932 kb on + strand, within Pf6N2E2_962 at 1134.010 kb on - strand at 1134.196 kb on + strand, within Pf6N2E2_963 at 1134.197 kb on - strand, within Pf6N2E2_963 at 1134.212 kb on + strand, within Pf6N2E2_963 at 1134.213 kb on - strand, within Pf6N2E2_963 at 1134.291 kb on + strand, within Pf6N2E2_963 at 1134.374 kb on - strand, within Pf6N2E2_963 at 1134.423 kb on + strand, within Pf6N2E2_963 at 1134.587 kb on + strand, within Pf6N2E2_963 at 1134.587 kb on + strand, within Pf6N2E2_963 at 1134.674 kb on + strand at 1134.675 kb on - strand at 1134.675 kb on - strand at 1134.866 kb on + strand, within Pf6N2E2_964 at 1134.867 kb on - strand, within Pf6N2E2_964 at 1134.879 kb on + strand, within Pf6N2E2_964 at 1134.880 kb on - strand, within Pf6N2E2_964 at 1134.880 kb on - strand, within Pf6N2E2_964
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 2 remove 1,132,577 + Pf6N2E2_960 0.82 -0.1 1,132,577 + Pf6N2E2_960 0.82 -0.5 1,132,578 - Pf6N2E2_960 0.82 -0.7 1,132,579 + Pf6N2E2_960 0.82 +0.9 1,132,579 + Pf6N2E2_960 0.82 -0.7 1,132,579 + Pf6N2E2_960 0.82 -0.1 1,132,579 + Pf6N2E2_960 0.82 -0.0 1,132,579 + Pf6N2E2_960 0.82 +0.9 1,132,579 + Pf6N2E2_960 0.82 +1.9 1,132,600 + Pf6N2E2_960 0.83 -0.1 1,132,601 - Pf6N2E2_960 0.83 -0.6 1,132,804 + -0.7 1,132,862 - +0.9 1,132,862 - -0.1 1,132,897 - +0.9 1,132,903 + +0.9 1,132,903 + +0.1 1,132,903 + +0.9 1,132,903 + +0.9 1,132,904 - -0.0 1,133,189 + Pf6N2E2_961 0.44 -0.8 1,133,207 + Pf6N2E2_961 0.48 -0.5 1,133,345 + Pf6N2E2_961 0.74 +0.9 1,133,458 + -1.2 1,133,459 - +0.9 1,133,465 + +0.9 1,133,812 + Pf6N2E2_962 0.66 -0.7 1,133,812 + Pf6N2E2_962 0.66 -1.1 1,133,932 + Pf6N2E2_962 0.89 -0.1 1,134,010 - +0.9 1,134,196 + Pf6N2E2_963 0.29 +0.3 1,134,197 - Pf6N2E2_963 0.30 +0.3 1,134,212 + Pf6N2E2_963 0.32 +0.9 1,134,213 - Pf6N2E2_963 0.32 -0.1 1,134,291 + Pf6N2E2_963 0.44 -0.3 1,134,374 - Pf6N2E2_963 0.56 -0.7 1,134,423 + Pf6N2E2_963 0.64 +0.9 1,134,587 + Pf6N2E2_963 0.89 -0.1 1,134,587 + Pf6N2E2_963 0.89 +0.9 1,134,674 + +0.9 1,134,675 - +0.9 1,134,675 - -1.1 1,134,866 + Pf6N2E2_964 0.20 -0.1 1,134,867 - Pf6N2E2_964 0.20 +2.4 1,134,879 + Pf6N2E2_964 0.22 +0.9 1,134,880 - Pf6N2E2_964 0.22 -0.4 1,134,880 - Pf6N2E2_964 0.22 +0.9
Or see this region's nucleotide sequence