Experiment: Ying_Nucleobase14 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_794 and Pf6N2E2_795 are separated by 195 nucleotides Pf6N2E2_795 and Pf6N2E2_796 are separated by 428 nucleotides
Pf6N2E2_794 - YD repeat protein, at 920,487 to 925,193
_794
Pf6N2E2_795 - ABC transporter ATP-binding protein uup, at 925,389 to 926,954
_795
Pf6N2E2_796 - Fe(2+)/alpha-ketoglutarate-dependent dioxygenase LpxO, at 927,383 to 928,276
_796
Position (kb) 925
926
927 Strain fitness (log2 ratio) -2
-1
0
1 at 924.426 kb on + strand, within Pf6N2E2_794 at 924.426 kb on + strand, within Pf6N2E2_794 at 924.426 kb on + strand, within Pf6N2E2_794 at 924.427 kb on - strand, within Pf6N2E2_794 at 924.446 kb on + strand, within Pf6N2E2_794 at 924.461 kb on + strand, within Pf6N2E2_794 at 924.461 kb on + strand, within Pf6N2E2_794 at 924.461 kb on + strand, within Pf6N2E2_794 at 924.461 kb on + strand, within Pf6N2E2_794 at 924.461 kb on + strand, within Pf6N2E2_794 at 924.461 kb on + strand, within Pf6N2E2_794 at 924.462 kb on - strand, within Pf6N2E2_794 at 924.462 kb on - strand, within Pf6N2E2_794 at 924.462 kb on - strand, within Pf6N2E2_794 at 924.516 kb on + strand, within Pf6N2E2_794 at 924.516 kb on + strand, within Pf6N2E2_794 at 924.516 kb on + strand, within Pf6N2E2_794 at 924.516 kb on + strand, within Pf6N2E2_794 at 924.516 kb on + strand, within Pf6N2E2_794 at 924.516 kb on + strand, within Pf6N2E2_794 at 924.516 kb on + strand, within Pf6N2E2_794 at 924.516 kb on + strand, within Pf6N2E2_794 at 924.516 kb on + strand, within Pf6N2E2_794 at 924.516 kb on + strand, within Pf6N2E2_794 at 924.517 kb on - strand, within Pf6N2E2_794 at 924.517 kb on - strand, within Pf6N2E2_794 at 924.517 kb on - strand, within Pf6N2E2_794 at 924.517 kb on - strand, within Pf6N2E2_794 at 924.517 kb on - strand, within Pf6N2E2_794 at 924.517 kb on - strand, within Pf6N2E2_794 at 924.518 kb on + strand, within Pf6N2E2_794 at 924.518 kb on + strand, within Pf6N2E2_794 at 924.518 kb on + strand, within Pf6N2E2_794 at 924.518 kb on + strand, within Pf6N2E2_794 at 924.518 kb on + strand, within Pf6N2E2_794 at 924.518 kb on + strand, within Pf6N2E2_794 at 924.518 kb on + strand, within Pf6N2E2_794 at 924.518 kb on + strand, within Pf6N2E2_794 at 924.518 kb on + strand, within Pf6N2E2_794 at 924.518 kb on + strand, within Pf6N2E2_794 at 924.518 kb on + strand, within Pf6N2E2_794 at 924.518 kb on + strand, within Pf6N2E2_794 at 924.519 kb on - strand, within Pf6N2E2_794 at 924.519 kb on - strand, within Pf6N2E2_794 at 924.519 kb on - strand, within Pf6N2E2_794 at 924.519 kb on - strand, within Pf6N2E2_794 at 924.519 kb on - strand, within Pf6N2E2_794 at 924.519 kb on - strand, within Pf6N2E2_794 at 924.519 kb on - strand, within Pf6N2E2_794 at 924.519 kb on - strand, within Pf6N2E2_794 at 924.519 kb on - strand, within Pf6N2E2_794 at 924.519 kb on - strand, within Pf6N2E2_794 at 924.519 kb on - strand, within Pf6N2E2_794 at 924.519 kb on - strand, within Pf6N2E2_794 at 924.519 kb on - strand, within Pf6N2E2_794 at 924.519 kb on - strand, within Pf6N2E2_794 at 924.519 kb on - strand, within Pf6N2E2_794 at 924.519 kb on - strand, within Pf6N2E2_794 at 924.543 kb on + strand, within Pf6N2E2_794 at 924.543 kb on + strand, within Pf6N2E2_794 at 924.543 kb on + strand, within Pf6N2E2_794 at 924.615 kb on + strand, within Pf6N2E2_794 at 924.621 kb on + strand, within Pf6N2E2_794 at 924.621 kb on + strand, within Pf6N2E2_794 at 924.621 kb on + strand, within Pf6N2E2_794 at 924.622 kb on - strand, within Pf6N2E2_794 at 924.647 kb on - strand, within Pf6N2E2_794 at 924.706 kb on + strand, within Pf6N2E2_794 at 924.706 kb on + strand, within Pf6N2E2_794 at 924.707 kb on - strand, within Pf6N2E2_794 at 924.707 kb on - strand, within Pf6N2E2_794 at 924.824 kb on + strand at 924.941 kb on + strand at 924.986 kb on + strand at 924.986 kb on + strand at 925.038 kb on + strand at 925.039 kb on - strand at 925.046 kb on + strand at 925.064 kb on + strand at 925.064 kb on + strand at 925.064 kb on + strand at 925.064 kb on + strand at 925.065 kb on - strand at 925.077 kb on + strand at 925.077 kb on + strand at 925.078 kb on - strand at 925.078 kb on - strand at 925.078 kb on - strand at 925.108 kb on + strand at 925.108 kb on + strand at 925.108 kb on + strand at 925.108 kb on + strand at 925.108 kb on + strand at 925.109 kb on - strand at 925.109 kb on - strand at 925.112 kb on + strand at 925.112 kb on + strand at 925.112 kb on + strand at 925.112 kb on + strand at 925.112 kb on + strand at 925.113 kb on - strand at 925.113 kb on - strand at 925.113 kb on - strand at 925.113 kb on - strand at 925.113 kb on - strand at 925.113 kb on - strand at 925.116 kb on + strand at 925.116 kb on + strand at 925.116 kb on + strand at 925.116 kb on + strand at 925.116 kb on + strand at 925.116 kb on + strand at 925.117 kb on - strand at 925.117 kb on - strand at 925.117 kb on - strand at 925.118 kb on + strand at 925.118 kb on + strand at 925.118 kb on + strand at 925.119 kb on - strand at 925.141 kb on + strand at 925.160 kb on - strand at 925.160 kb on - strand at 925.175 kb on + strand at 925.175 kb on + strand at 925.175 kb on + strand at 925.176 kb on - strand at 925.176 kb on - strand at 925.197 kb on + strand at 925.319 kb on + strand at 925.320 kb on - strand at 925.354 kb on - strand at 925.354 kb on - strand at 925.354 kb on - strand at 925.390 kb on + strand at 925.390 kb on + strand at 925.390 kb on + strand at 925.391 kb on - strand at 925.391 kb on - strand at 925.391 kb on - strand at 925.391 kb on - strand at 925.417 kb on + strand at 925.426 kb on + strand at 925.426 kb on + strand at 925.426 kb on + strand at 925.426 kb on + strand at 925.427 kb on - strand at 925.427 kb on - strand at 925.427 kb on - strand at 925.534 kb on + strand at 925.819 kb on + strand, within Pf6N2E2_795 at 925.819 kb on + strand, within Pf6N2E2_795 at 925.819 kb on + strand, within Pf6N2E2_795 at 926.260 kb on + strand, within Pf6N2E2_795 at 926.260 kb on + strand, within Pf6N2E2_795 at 926.260 kb on + strand, within Pf6N2E2_795 at 926.260 kb on + strand, within Pf6N2E2_795 at 926.261 kb on - strand, within Pf6N2E2_795 at 926.261 kb on - strand, within Pf6N2E2_795 at 926.261 kb on - strand, within Pf6N2E2_795 at 926.261 kb on - strand, within Pf6N2E2_795 at 926.269 kb on + strand, within Pf6N2E2_795 at 926.269 kb on + strand, within Pf6N2E2_795 at 926.594 kb on - strand, within Pf6N2E2_795 at 926.964 kb on - strand at 926.964 kb on - strand at 926.964 kb on - strand at 926.969 kb on + strand at 926.970 kb on - strand at 926.970 kb on - strand at 926.984 kb on + strand at 927.006 kb on - strand at 927.006 kb on - strand at 927.009 kb on + strand at 927.009 kb on + strand at 927.010 kb on - strand at 927.023 kb on + strand at 927.035 kb on - strand at 927.102 kb on - strand at 927.119 kb on - strand at 927.138 kb on - strand at 927.185 kb on + strand at 927.186 kb on - strand at 927.186 kb on - strand at 927.188 kb on + strand at 927.188 kb on + strand at 927.188 kb on + strand at 927.189 kb on - strand at 927.189 kb on - strand at 927.189 kb on - strand at 927.205 kb on - strand at 927.205 kb on - strand at 927.232 kb on + strand at 927.233 kb on - strand at 927.233 kb on - strand at 927.293 kb on + strand at 927.294 kb on - strand at 927.407 kb on + strand at 927.407 kb on + strand at 927.407 kb on + strand at 927.407 kb on + strand at 927.407 kb on + strand at 927.408 kb on - strand at 927.408 kb on - strand at 927.408 kb on - strand at 927.425 kb on + strand at 927.426 kb on - strand at 927.455 kb on - strand at 927.515 kb on + strand, within Pf6N2E2_796 at 927.515 kb on + strand, within Pf6N2E2_796 at 927.515 kb on + strand, within Pf6N2E2_796 at 927.515 kb on + strand, within Pf6N2E2_796 at 927.516 kb on - strand, within Pf6N2E2_796 at 927.753 kb on + strand, within Pf6N2E2_796 at 927.753 kb on + strand, within Pf6N2E2_796 at 927.753 kb on + strand, within Pf6N2E2_796 at 927.754 kb on - strand, within Pf6N2E2_796 at 927.754 kb on - strand, within Pf6N2E2_796 at 927.771 kb on + strand, within Pf6N2E2_796 at 927.852 kb on - strand, within Pf6N2E2_796 at 927.908 kb on + strand, within Pf6N2E2_796 at 927.908 kb on + strand, within Pf6N2E2_796 at 927.909 kb on - strand, within Pf6N2E2_796 at 927.932 kb on + strand, within Pf6N2E2_796 at 927.932 kb on + strand, within Pf6N2E2_796
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 2 remove 924,426 + Pf6N2E2_794 0.84 +0.9 924,426 + Pf6N2E2_794 0.84 +0.9 924,426 + Pf6N2E2_794 0.84 -0.1 924,427 - Pf6N2E2_794 0.84 -1.5 924,446 + Pf6N2E2_794 0.84 +0.9 924,461 + Pf6N2E2_794 0.84 -0.1 924,461 + Pf6N2E2_794 0.84 +0.9 924,461 + Pf6N2E2_794 0.84 +0.9 924,461 + Pf6N2E2_794 0.84 -0.7 924,461 + Pf6N2E2_794 0.84 -0.1 924,461 + Pf6N2E2_794 0.84 +0.9 924,462 - Pf6N2E2_794 0.84 +0.2 924,462 - Pf6N2E2_794 0.84 +0.9 924,462 - Pf6N2E2_794 0.84 -0.5 924,516 + Pf6N2E2_794 0.86 +0.9 924,516 + Pf6N2E2_794 0.86 -0.1 924,516 + Pf6N2E2_794 0.86 -0.1 924,516 + Pf6N2E2_794 0.86 -0.4 924,516 + Pf6N2E2_794 0.86 -0.0 924,516 + Pf6N2E2_794 0.86 +0.9 924,516 + Pf6N2E2_794 0.86 -0.4 924,516 + Pf6N2E2_794 0.86 -0.1 924,516 + Pf6N2E2_794 0.86 -1.1 924,516 + Pf6N2E2_794 0.86 +0.9 924,517 - Pf6N2E2_794 0.86 -0.6 924,517 - Pf6N2E2_794 0.86 -0.1 924,517 - Pf6N2E2_794 0.86 +0.9 924,517 - Pf6N2E2_794 0.86 +0.9 924,517 - Pf6N2E2_794 0.86 -0.7 924,517 - Pf6N2E2_794 0.86 -0.1 924,518 + Pf6N2E2_794 0.86 -0.7 924,518 + Pf6N2E2_794 0.86 -0.7 924,518 + Pf6N2E2_794 0.86 +0.9 924,518 + Pf6N2E2_794 0.86 -0.1 924,518 + Pf6N2E2_794 0.86 -1.5 924,518 + Pf6N2E2_794 0.86 -1.1 924,518 + Pf6N2E2_794 0.86 -0.1 924,518 + Pf6N2E2_794 0.86 -0.6 924,518 + Pf6N2E2_794 0.86 +0.9 924,518 + Pf6N2E2_794 0.86 +0.9 924,518 + Pf6N2E2_794 0.86 -0.1 924,518 + Pf6N2E2_794 0.86 +0.9 924,519 - Pf6N2E2_794 0.86 +0.9 924,519 - Pf6N2E2_794 0.86 +0.9 924,519 - Pf6N2E2_794 0.86 +0.9 924,519 - Pf6N2E2_794 0.86 +0.9 924,519 - Pf6N2E2_794 0.86 +0.9 924,519 - Pf6N2E2_794 0.86 -0.3 924,519 - Pf6N2E2_794 0.86 +0.4 924,519 - Pf6N2E2_794 0.86 -0.1 924,519 - Pf6N2E2_794 0.86 -0.1 924,519 - Pf6N2E2_794 0.86 -0.2 924,519 - Pf6N2E2_794 0.86 -0.5 924,519 - Pf6N2E2_794 0.86 +0.9 924,519 - Pf6N2E2_794 0.86 -0.1 924,519 - Pf6N2E2_794 0.86 -0.5 924,519 - Pf6N2E2_794 0.86 +0.9 924,519 - Pf6N2E2_794 0.86 +0.9 924,543 + Pf6N2E2_794 0.86 +0.9 924,543 + Pf6N2E2_794 0.86 +0.9 924,543 + Pf6N2E2_794 0.86 -0.1 924,615 + Pf6N2E2_794 0.88 +0.9 924,621 + Pf6N2E2_794 0.88 -0.1 924,621 + Pf6N2E2_794 0.88 -1.1 924,621 + Pf6N2E2_794 0.88 -0.8 924,622 - Pf6N2E2_794 0.88 -0.1 924,647 - Pf6N2E2_794 0.88 +0.9 924,706 + Pf6N2E2_794 0.90 +0.9 924,706 + Pf6N2E2_794 0.90 +0.9 924,707 - Pf6N2E2_794 0.90 +0.3 924,707 - Pf6N2E2_794 0.90 +0.9 924,824 + +0.7 924,941 + +0.9 924,986 + -0.1 924,986 + -0.1 925,038 + +0.9 925,039 - +0.9 925,046 + -0.5 925,064 + -0.6 925,064 + +0.9 925,064 + +0.9 925,064 + +0.9 925,065 - -0.6 925,077 + -0.1 925,077 + +0.9 925,078 - -0.1 925,078 - -0.7 925,078 - -0.5 925,108 + +0.9 925,108 + -0.5 925,108 + -1.1 925,108 + -0.1 925,108 + +0.9 925,109 - -0.3 925,109 - +0.9 925,112 + -1.1 925,112 + -0.9 925,112 + +0.9 925,112 + +0.9 925,112 + -0.1 925,113 - -0.7 925,113 - +0.9 925,113 - -0.1 925,113 - -2.0 925,113 - +0.9 925,113 - +0.9 925,116 + +0.9 925,116 + +0.9 925,116 + -0.1 925,116 + -1.7 925,116 + -0.1 925,116 + +0.9 925,117 - -1.8 925,117 - -0.1 925,117 - +0.9 925,118 + -0.7 925,118 + +0.9 925,118 + -0.7 925,119 - +0.9 925,141 + +0.9 925,160 - +0.9 925,160 - +0.9 925,175 + -0.7 925,175 + +0.9 925,175 + -1.1 925,176 - -0.1 925,176 - +0.9 925,197 + -2.0 925,319 + +0.9 925,320 - -0.6 925,354 - -0.5 925,354 - +1.4 925,354 - -0.5 925,390 + -0.6 925,390 + +0.9 925,390 + +0.9 925,391 - +0.9 925,391 - +0.9 925,391 - -0.6 925,391 - -0.5 925,417 + -1.1 925,426 + -0.7 925,426 + -0.1 925,426 + -1.0 925,426 + +0.9 925,427 - -0.7 925,427 - +0.9 925,427 - -0.1 925,534 + -0.1 925,819 + Pf6N2E2_795 0.27 -0.1 925,819 + Pf6N2E2_795 0.27 +0.9 925,819 + Pf6N2E2_795 0.27 -1.1 926,260 + Pf6N2E2_795 0.56 -0.1 926,260 + Pf6N2E2_795 0.56 -0.7 926,260 + Pf6N2E2_795 0.56 +0.9 926,260 + Pf6N2E2_795 0.56 -1.1 926,261 - Pf6N2E2_795 0.56 -1.1 926,261 - Pf6N2E2_795 0.56 -1.1 926,261 - Pf6N2E2_795 0.56 +0.9 926,261 - Pf6N2E2_795 0.56 +0.9 926,269 + Pf6N2E2_795 0.56 +0.9 926,269 + Pf6N2E2_795 0.56 +0.9 926,594 - Pf6N2E2_795 0.77 -0.1 926,964 - -0.1 926,964 - +0.9 926,964 - +0.9 926,969 + +0.9 926,970 - +0.9 926,970 - +0.9 926,984 + -0.1 927,006 - -1.5 927,006 - -0.1 927,009 + +0.9 927,009 + -0.3 927,010 - +0.9 927,023 + +0.9 927,035 - +0.9 927,102 - +0.9 927,119 - +0.5 927,138 - +0.6 927,185 + +0.6 927,186 - +0.9 927,186 - +0.9 927,188 + -0.1 927,188 + +0.9 927,188 + +0.9 927,189 - -0.1 927,189 - +0.9 927,189 - +0.9 927,205 - -0.1 927,205 - +0.9 927,232 + -1.1 927,233 - +1.4 927,233 - +0.9 927,293 + +0.9 927,294 - +0.9 927,407 + +0.9 927,407 + +0.9 927,407 + +0.9 927,407 + +0.9 927,407 + -0.7 927,408 - +0.9 927,408 - -0.1 927,408 - -1.1 927,425 + +0.9 927,426 - +0.9 927,455 - +0.9 927,515 + Pf6N2E2_796 0.15 -0.8 927,515 + Pf6N2E2_796 0.15 -0.1 927,515 + Pf6N2E2_796 0.15 +0.9 927,515 + Pf6N2E2_796 0.15 +0.9 927,516 - Pf6N2E2_796 0.15 +0.9 927,753 + Pf6N2E2_796 0.41 -0.1 927,753 + Pf6N2E2_796 0.41 +0.9 927,753 + Pf6N2E2_796 0.41 -0.6 927,754 - Pf6N2E2_796 0.41 +0.9 927,754 - Pf6N2E2_796 0.41 -0.4 927,771 + Pf6N2E2_796 0.43 +0.9 927,852 - Pf6N2E2_796 0.52 +0.3 927,908 + Pf6N2E2_796 0.59 +0.9 927,908 + Pf6N2E2_796 0.59 +0.7 927,909 - Pf6N2E2_796 0.59 -1.4 927,932 + Pf6N2E2_796 0.61 +0.9 927,932 + Pf6N2E2_796 0.61 +0.9
Or see this region's nucleotide sequence