Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_782

Experiment: Ying_Nucleobase14 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_781 and Pf6N2E2_782 are separated by 235 nucleotidesPf6N2E2_782 and Pf6N2E2_783 are separated by 44 nucleotides Pf6N2E2_781 - Outer membrane autotransporter barrel, at 892,555 to 894,657 _781 Pf6N2E2_782 - hypothetical protein, at 894,893 to 896,386 _782 Pf6N2E2_783 - hypothetical protein, at 896,431 to 897,528 _783 Position (kb) 894 895 896 897Strain fitness (log2 ratio) -2 -1 0 1 2at 893.920 kb on + strand, within Pf6N2E2_781at 893.921 kb on - strand, within Pf6N2E2_781at 893.922 kb on + strand, within Pf6N2E2_781at 893.922 kb on + strand, within Pf6N2E2_781at 893.922 kb on + strand, within Pf6N2E2_781at 893.923 kb on - strand, within Pf6N2E2_781at 894.013 kb on + strand, within Pf6N2E2_781at 894.015 kb on + strand, within Pf6N2E2_781at 894.015 kb on + strand, within Pf6N2E2_781at 894.070 kb on + strand, within Pf6N2E2_781at 894.082 kb on + strand, within Pf6N2E2_781at 894.112 kb on + strand, within Pf6N2E2_781at 894.112 kb on + strand, within Pf6N2E2_781at 894.115 kb on + strand, within Pf6N2E2_781at 894.115 kb on + strand, within Pf6N2E2_781at 894.116 kb on - strand, within Pf6N2E2_781at 894.199 kb on + strand, within Pf6N2E2_781at 894.199 kb on + strand, within Pf6N2E2_781at 894.243 kb on + strand, within Pf6N2E2_781at 894.243 kb on + strand, within Pf6N2E2_781at 894.262 kb on + strand, within Pf6N2E2_781at 894.262 kb on + strand, within Pf6N2E2_781at 894.262 kb on + strand, within Pf6N2E2_781at 894.358 kb on + strand, within Pf6N2E2_781at 894.358 kb on + strand, within Pf6N2E2_781at 894.359 kb on - strand, within Pf6N2E2_781at 894.492 kb on + strandat 894.492 kb on + strandat 894.492 kb on + strandat 894.492 kb on + strandat 894.492 kb on + strandat 894.592 kb on + strandat 894.629 kb on + strandat 894.646 kb on + strandat 894.669 kb on + strandat 894.803 kb on - strandat 894.803 kb on - strandat 894.827 kb on + strandat 894.827 kb on + strandat 894.827 kb on + strandat 894.827 kb on + strandat 894.847 kb on + strandat 894.847 kb on + strandat 894.882 kb on + strandat 894.883 kb on - strandat 894.947 kb on + strandat 895.009 kb on + strandat 895.010 kb on - strandat 895.010 kb on - strandat 895.010 kb on - strandat 895.010 kb on - strandat 895.043 kb on - strand, within Pf6N2E2_782at 895.101 kb on - strand, within Pf6N2E2_782at 895.169 kb on + strand, within Pf6N2E2_782at 895.170 kb on - strand, within Pf6N2E2_782at 895.170 kb on - strand, within Pf6N2E2_782at 895.186 kb on - strand, within Pf6N2E2_782at 895.186 kb on - strand, within Pf6N2E2_782at 895.212 kb on - strand, within Pf6N2E2_782at 895.221 kb on + strand, within Pf6N2E2_782at 895.221 kb on + strand, within Pf6N2E2_782at 895.221 kb on + strand, within Pf6N2E2_782at 895.229 kb on + strand, within Pf6N2E2_782at 895.229 kb on + strand, within Pf6N2E2_782at 895.230 kb on - strand, within Pf6N2E2_782at 895.261 kb on + strand, within Pf6N2E2_782at 895.262 kb on - strand, within Pf6N2E2_782at 895.358 kb on + strand, within Pf6N2E2_782at 895.358 kb on + strand, within Pf6N2E2_782at 895.359 kb on - strand, within Pf6N2E2_782at 895.359 kb on - strand, within Pf6N2E2_782at 895.362 kb on + strand, within Pf6N2E2_782at 895.362 kb on + strand, within Pf6N2E2_782at 895.362 kb on + strand, within Pf6N2E2_782at 895.362 kb on + strand, within Pf6N2E2_782at 895.363 kb on - strand, within Pf6N2E2_782at 895.363 kb on - strand, within Pf6N2E2_782at 895.363 kb on - strand, within Pf6N2E2_782at 895.363 kb on - strand, within Pf6N2E2_782at 895.363 kb on - strand, within Pf6N2E2_782at 895.444 kb on + strand, within Pf6N2E2_782at 895.445 kb on - strand, within Pf6N2E2_782at 895.445 kb on - strand, within Pf6N2E2_782at 895.445 kb on - strand, within Pf6N2E2_782at 895.451 kb on + strand, within Pf6N2E2_782at 895.451 kb on + strand, within Pf6N2E2_782at 895.451 kb on + strand, within Pf6N2E2_782at 895.452 kb on - strand, within Pf6N2E2_782at 895.491 kb on + strand, within Pf6N2E2_782at 895.491 kb on + strand, within Pf6N2E2_782at 895.547 kb on + strand, within Pf6N2E2_782at 895.548 kb on - strand, within Pf6N2E2_782at 895.548 kb on - strand, within Pf6N2E2_782at 895.548 kb on - strand, within Pf6N2E2_782at 895.692 kb on - strand, within Pf6N2E2_782at 895.765 kb on + strand, within Pf6N2E2_782at 895.766 kb on - strand, within Pf6N2E2_782at 895.859 kb on + strand, within Pf6N2E2_782at 895.860 kb on - strand, within Pf6N2E2_782at 895.916 kb on + strand, within Pf6N2E2_782at 895.916 kb on + strandat 895.916 kb on + strand, within Pf6N2E2_782at 895.916 kb on + strand, within Pf6N2E2_782at 896.135 kb on + strand, within Pf6N2E2_782at 896.135 kb on + strand, within Pf6N2E2_782at 896.135 kb on + strand, within Pf6N2E2_782at 896.135 kb on + strand, within Pf6N2E2_782at 896.136 kb on - strand, within Pf6N2E2_782at 896.136 kb on - strand, within Pf6N2E2_782at 896.262 kb on + strandat 896.262 kb on + strandat 896.335 kb on + strandat 896.335 kb on + strandat 896.335 kb on + strandat 896.335 kb on + strandat 896.336 kb on - strandat 896.364 kb on + strandat 896.364 kb on + strandat 896.364 kb on + strandat 896.364 kb on + strandat 896.364 kb on + strandat 896.364 kb on + strandat 896.364 kb on + strandat 896.364 kb on + strandat 896.364 kb on + strandat 896.364 kb on + strandat 896.364 kb on + strandat 896.364 kb on + strandat 896.365 kb on - strandat 896.365 kb on - strandat 896.365 kb on - strandat 896.365 kb on - strandat 896.365 kb on - strandat 896.365 kb on - strandat 896.365 kb on - strandat 896.402 kb on + strandat 896.402 kb on + strandat 896.402 kb on + strandat 896.402 kb on + strandat 896.402 kb on + strandat 896.403 kb on - strandat 896.403 kb on - strandat 896.403 kb on - strandat 896.438 kb on + strandat 896.438 kb on + strandat 896.438 kb on + strandat 896.439 kb on - strandat 896.494 kb on + strandat 896.502 kb on - strandat 896.502 kb on - strandat 896.614 kb on + strand, within Pf6N2E2_783at 896.614 kb on + strand, within Pf6N2E2_783at 896.615 kb on - strand, within Pf6N2E2_783at 896.763 kb on + strand, within Pf6N2E2_783at 896.763 kb on + strand, within Pf6N2E2_783at 896.763 kb on + strand, within Pf6N2E2_783at 896.763 kb on + strand, within Pf6N2E2_783at 896.764 kb on - strand, within Pf6N2E2_783at 896.825 kb on - strand, within Pf6N2E2_783at 897.005 kb on + strand, within Pf6N2E2_783at 897.005 kb on + strand, within Pf6N2E2_783at 897.005 kb on + strand, within Pf6N2E2_783at 897.006 kb on - strand, within Pf6N2E2_783at 897.006 kb on - strand, within Pf6N2E2_783at 897.006 kb on - strand, within Pf6N2E2_783at 897.027 kb on + strand, within Pf6N2E2_783at 897.027 kb on + strand, within Pf6N2E2_783at 897.028 kb on - strand, within Pf6N2E2_783at 897.028 kb on - strand, within Pf6N2E2_783at 897.028 kb on - strand, within Pf6N2E2_783at 897.034 kb on + strand, within Pf6N2E2_783at 897.034 kb on + strand, within Pf6N2E2_783at 897.034 kb on + strand, within Pf6N2E2_783at 897.035 kb on - strand, within Pf6N2E2_783at 897.035 kb on - strand, within Pf6N2E2_783at 897.086 kb on + strand, within Pf6N2E2_783at 897.174 kb on + strandat 897.174 kb on + strand, within Pf6N2E2_783at 897.175 kb on - strand, within Pf6N2E2_783at 897.175 kb on - strand, within Pf6N2E2_783at 897.175 kb on - strand, within Pf6N2E2_783at 897.285 kb on + strand, within Pf6N2E2_783at 897.361 kb on + strand, within Pf6N2E2_783at 897.383 kb on + strand, within Pf6N2E2_783at 897.383 kb on + strand, within Pf6N2E2_783at 897.383 kb on + strand, within Pf6N2E2_783at 897.383 kb on + strand, within Pf6N2E2_783at 897.383 kb on + strand, within Pf6N2E2_783at 897.383 kb on + strand, within Pf6N2E2_783at 897.383 kb on + strand, within Pf6N2E2_783at 897.383 kb on + strand, within Pf6N2E2_783at 897.383 kb on + strand, within Pf6N2E2_783at 897.384 kb on - strand, within Pf6N2E2_783

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 2
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893,920 + Pf6N2E2_781 0.65 +0.9
893,921 - Pf6N2E2_781 0.65 +0.9
893,922 + Pf6N2E2_781 0.65 +0.9
893,922 + Pf6N2E2_781 0.65 +0.9
893,922 + Pf6N2E2_781 0.65 +0.9
893,923 - Pf6N2E2_781 0.65 +0.9
894,013 + Pf6N2E2_781 0.69 +0.1
894,015 + Pf6N2E2_781 0.69 -0.9
894,015 + Pf6N2E2_781 0.69 +0.9
894,070 + Pf6N2E2_781 0.72 +0.9
894,082 + Pf6N2E2_781 0.73 -0.4
894,112 + Pf6N2E2_781 0.74 +0.9
894,112 + Pf6N2E2_781 0.74 +0.9
894,115 + Pf6N2E2_781 0.74 +0.9
894,115 + Pf6N2E2_781 0.74 -0.6
894,116 - Pf6N2E2_781 0.74 +0.9
894,199 + Pf6N2E2_781 0.78 -0.1
894,199 + Pf6N2E2_781 0.78 -0.1
894,243 + Pf6N2E2_781 0.80 +0.9
894,243 + Pf6N2E2_781 0.80 +0.9
894,262 + Pf6N2E2_781 0.81 +0.9
894,262 + Pf6N2E2_781 0.81 -1.1
894,262 + Pf6N2E2_781 0.81 +0.9
894,358 + Pf6N2E2_781 0.86 +0.9
894,358 + Pf6N2E2_781 0.86 +0.9
894,359 - Pf6N2E2_781 0.86 -0.1
894,492 + +0.9
894,492 + -1.0
894,492 + -0.9
894,492 + +0.9
894,492 + +0.9
894,592 + -0.1
894,629 + -0.5
894,646 + -2.0
894,669 + +0.9
894,803 - -0.4
894,803 - +0.9
894,827 + -0.1
894,827 + -0.8
894,827 + +0.9
894,827 + -1.1
894,847 + +0.9
894,847 + +0.9
894,882 + +0.9
894,883 - +0.9
894,947 + -0.1
895,009 + +0.9
895,010 - +0.9
895,010 - +0.9
895,010 - -0.7
895,010 - +0.9
895,043 - Pf6N2E2_782 0.10 +0.9
895,101 - Pf6N2E2_782 0.14 -0.1
895,169 + Pf6N2E2_782 0.18 +0.9
895,170 - Pf6N2E2_782 0.19 -0.3
895,170 - Pf6N2E2_782 0.19 -0.5
895,186 - Pf6N2E2_782 0.20 +0.9
895,186 - Pf6N2E2_782 0.20 -0.6
895,212 - Pf6N2E2_782 0.21 -0.4
895,221 + Pf6N2E2_782 0.22 -0.1
895,221 + Pf6N2E2_782 0.22 +0.3
895,221 + Pf6N2E2_782 0.22 +0.9
895,229 + Pf6N2E2_782 0.22 +0.9
895,229 + Pf6N2E2_782 0.22 +0.9
895,230 - Pf6N2E2_782 0.23 -1.5
895,261 + Pf6N2E2_782 0.25 +0.9
895,262 - Pf6N2E2_782 0.25 +0.9
895,358 + Pf6N2E2_782 0.31 +0.9
895,358 + Pf6N2E2_782 0.31 -0.1
895,359 - Pf6N2E2_782 0.31 +0.9
895,359 - Pf6N2E2_782 0.31 +0.9
895,362 + Pf6N2E2_782 0.31 +0.9
895,362 + Pf6N2E2_782 0.31 +0.9
895,362 + Pf6N2E2_782 0.31 +0.9
895,362 + Pf6N2E2_782 0.31 +2.2
895,363 - Pf6N2E2_782 0.31 +0.9
895,363 - Pf6N2E2_782 0.31 +0.9
895,363 - Pf6N2E2_782 0.31 -0.6
895,363 - Pf6N2E2_782 0.31 +0.9
895,363 - Pf6N2E2_782 0.31 -0.1
895,444 + Pf6N2E2_782 0.37 -1.1
895,445 - Pf6N2E2_782 0.37 +0.9
895,445 - Pf6N2E2_782 0.37 +0.9
895,445 - Pf6N2E2_782 0.37 +0.9
895,451 + Pf6N2E2_782 0.37 +0.2
895,451 + Pf6N2E2_782 0.37 -0.1
895,451 + Pf6N2E2_782 0.37 -0.1
895,452 - Pf6N2E2_782 0.37 +0.9
895,491 + Pf6N2E2_782 0.40 +0.9
895,491 + Pf6N2E2_782 0.40 -0.7
895,547 + Pf6N2E2_782 0.44 +0.1
895,548 - Pf6N2E2_782 0.44 +0.9
895,548 - Pf6N2E2_782 0.44 +0.9
895,548 - Pf6N2E2_782 0.44 +0.9
895,692 - Pf6N2E2_782 0.53 +0.9
895,765 + Pf6N2E2_782 0.58 +0.1
895,766 - Pf6N2E2_782 0.58 -0.1
895,859 + Pf6N2E2_782 0.65 +0.4
895,860 - Pf6N2E2_782 0.65 +0.9
895,916 + Pf6N2E2_782 0.68 +0.1
895,916 + +0.9
895,916 + Pf6N2E2_782 0.68 +0.9
895,916 + Pf6N2E2_782 0.68 +0.9
896,135 + Pf6N2E2_782 0.83 -0.1
896,135 + Pf6N2E2_782 0.83 +1.9
896,135 + Pf6N2E2_782 0.83 +0.9
896,135 + Pf6N2E2_782 0.83 +0.9
896,136 - Pf6N2E2_782 0.83 +0.9
896,136 - Pf6N2E2_782 0.83 +0.9
896,262 + -1.1
896,262 + -0.1
896,335 + +0.9
896,335 + +1.4
896,335 + -1.3
896,335 + +0.9
896,336 - +0.9
896,364 + -1.0
896,364 + +0.9
896,364 + +0.1
896,364 + -0.1
896,364 + +0.9
896,364 + +1.9
896,364 + -0.7
896,364 + -1.7
896,364 + +0.9
896,364 + +0.9
896,364 + -0.1
896,364 + -0.1
896,365 - -0.5
896,365 - -0.1
896,365 - -2.7
896,365 - +0.9
896,365 - +0.9
896,365 - +0.7
896,365 - +0.9
896,402 + -0.3
896,402 + -0.3
896,402 + -0.1
896,402 + +0.9
896,402 + -1.5
896,403 - +0.9
896,403 - +0.9
896,403 - +0.9
896,438 + +0.9
896,438 + -0.1
896,438 + -1.7
896,439 - +0.9
896,494 + +0.9
896,502 - +0.2
896,502 - +0.9
896,614 + Pf6N2E2_783 0.17 -0.7
896,614 + Pf6N2E2_783 0.17 -0.1
896,615 - Pf6N2E2_783 0.17 -0.7
896,763 + Pf6N2E2_783 0.30 -0.1
896,763 + Pf6N2E2_783 0.30 +0.9
896,763 + Pf6N2E2_783 0.30 -0.3
896,763 + Pf6N2E2_783 0.30 +0.9
896,764 - Pf6N2E2_783 0.30 +0.9
896,825 - Pf6N2E2_783 0.36 -0.5
897,005 + Pf6N2E2_783 0.52 +0.9
897,005 + Pf6N2E2_783 0.52 +0.9
897,005 + Pf6N2E2_783 0.52 +0.9
897,006 - Pf6N2E2_783 0.52 +0.9
897,006 - Pf6N2E2_783 0.52 +0.1
897,006 - Pf6N2E2_783 0.52 +0.9
897,027 + Pf6N2E2_783 0.54 -0.6
897,027 + Pf6N2E2_783 0.54 +0.9
897,028 - Pf6N2E2_783 0.54 +0.9
897,028 - Pf6N2E2_783 0.54 +0.9
897,028 - Pf6N2E2_783 0.54 +0.9
897,034 + Pf6N2E2_783 0.55 +0.9
897,034 + Pf6N2E2_783 0.55 +0.9
897,034 + Pf6N2E2_783 0.55 +0.9
897,035 - Pf6N2E2_783 0.55 -0.3
897,035 - Pf6N2E2_783 0.55 -0.7
897,086 + Pf6N2E2_783 0.60 +0.9
897,174 + +0.9
897,174 + Pf6N2E2_783 0.68 -0.1
897,175 - Pf6N2E2_783 0.68 -1.1
897,175 - Pf6N2E2_783 0.68 -0.7
897,175 - Pf6N2E2_783 0.68 -0.1
897,285 + Pf6N2E2_783 0.78 -1.3
897,361 + Pf6N2E2_783 0.85 -0.1
897,383 + Pf6N2E2_783 0.87 -0.6
897,383 + Pf6N2E2_783 0.87 -0.7
897,383 + Pf6N2E2_783 0.87 -0.1
897,383 + Pf6N2E2_783 0.87 +0.9
897,383 + Pf6N2E2_783 0.87 -0.5
897,383 + Pf6N2E2_783 0.87 -0.1
897,383 + Pf6N2E2_783 0.87 -0.6
897,383 + Pf6N2E2_783 0.87 +0.9
897,383 + Pf6N2E2_783 0.87 -0.5
897,384 - Pf6N2E2_783 0.87 -0.5

Or see this region's nucleotide sequence