Experiment: Ying_Nucleobase14 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_551 and Pf6N2E2_552 overlap by 17 nucleotides Pf6N2E2_552 and Pf6N2E2_553 are separated by 13 nucleotides Pf6N2E2_553 and Pf6N2E2_554 are separated by 197 nucleotides
Pf6N2E2_551 - Protein ImpG/VasA, at 622,878 to 624,668
_551
Pf6N2E2_552 - Uncharacterized protein ImpF, at 624,652 to 625,095
_552
Pf6N2E2_553 - Uncharacterized protein ImpD, at 625,109 to 625,606
_553
Pf6N2E2_554 - Uncharacterized protein ImpC, at 625,804 to 627,285
_554
Position (kb) 624
625
626 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 623.815 kb on + strand, within Pf6N2E2_551 at 623.815 kb on + strand, within Pf6N2E2_551 at 623.815 kb on + strand, within Pf6N2E2_551 at 623.821 kb on + strand, within Pf6N2E2_551 at 623.821 kb on + strand, within Pf6N2E2_551 at 623.821 kb on + strand, within Pf6N2E2_551 at 623.896 kb on + strand, within Pf6N2E2_551 at 623.897 kb on - strand, within Pf6N2E2_551 at 623.925 kb on + strand, within Pf6N2E2_551 at 623.925 kb on + strand, within Pf6N2E2_551 at 623.926 kb on - strand, within Pf6N2E2_551 at 624.455 kb on - strand, within Pf6N2E2_551 at 624.631 kb on + strand at 624.631 kb on + strand at 624.631 kb on + strand at 624.631 kb on + strand at 624.632 kb on - strand at 624.635 kb on - strand at 624.674 kb on - strand at 624.757 kb on + strand, within Pf6N2E2_552 at 624.758 kb on - strand, within Pf6N2E2_552 at 624.917 kb on + strand, within Pf6N2E2_552 at 625.110 kb on + strand at 625.296 kb on + strand, within Pf6N2E2_553 at 625.297 kb on - strand, within Pf6N2E2_553 at 625.297 kb on - strand, within Pf6N2E2_553 at 625.297 kb on - strand, within Pf6N2E2_553 at 625.389 kb on + strand, within Pf6N2E2_553 at 625.518 kb on + strand, within Pf6N2E2_553 at 625.518 kb on + strand, within Pf6N2E2_553 at 625.519 kb on - strand, within Pf6N2E2_553 at 625.633 kb on + strand at 625.633 kb on + strand at 625.633 kb on + strand at 625.633 kb on + strand at 625.633 kb on + strand at 625.634 kb on - strand at 625.634 kb on - strand at 625.634 kb on - strand at 625.634 kb on - strand at 625.634 kb on - strand at 625.634 kb on - strand at 625.654 kb on - strand at 625.654 kb on - strand at 625.767 kb on + strand at 625.767 kb on + strand at 625.767 kb on + strand at 625.768 kb on - strand at 625.775 kb on + strand at 625.776 kb on - strand at 625.783 kb on + strand at 625.783 kb on + strand at 625.783 kb on + strand at 625.783 kb on + strand at 625.783 kb on + strand at 625.784 kb on - strand at 625.784 kb on - strand at 625.791 kb on + strand at 625.791 kb on + strand at 625.814 kb on - strand at 625.902 kb on - strand at 625.902 kb on - strand at 626.003 kb on + strand, within Pf6N2E2_554 at 626.027 kb on + strand, within Pf6N2E2_554 at 626.027 kb on + strand, within Pf6N2E2_554 at 626.028 kb on - strand, within Pf6N2E2_554 at 626.035 kb on + strand, within Pf6N2E2_554 at 626.035 kb on + strand, within Pf6N2E2_554 at 626.035 kb on + strand, within Pf6N2E2_554 at 626.035 kb on + strand, within Pf6N2E2_554 at 626.035 kb on + strand, within Pf6N2E2_554 at 626.036 kb on - strand, within Pf6N2E2_554 at 626.036 kb on - strand, within Pf6N2E2_554 at 626.036 kb on - strand, within Pf6N2E2_554 at 626.036 kb on - strand, within Pf6N2E2_554 at 626.036 kb on - strand, within Pf6N2E2_554 at 626.036 kb on - strand, within Pf6N2E2_554 at 626.090 kb on + strand, within Pf6N2E2_554
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 2 remove 623,815 + Pf6N2E2_551 0.52 +1.1 623,815 + Pf6N2E2_551 0.52 -0.5 623,815 + Pf6N2E2_551 0.52 +0.9 623,821 + Pf6N2E2_551 0.53 -0.1 623,821 + Pf6N2E2_551 0.53 +0.9 623,821 + Pf6N2E2_551 0.53 -0.5 623,896 + Pf6N2E2_551 0.57 +0.9 623,897 - Pf6N2E2_551 0.57 +0.9 623,925 + Pf6N2E2_551 0.58 +0.9 623,925 + Pf6N2E2_551 0.58 -2.3 623,926 - Pf6N2E2_551 0.59 +0.9 624,455 - Pf6N2E2_551 0.88 -3.1 624,631 + +0.9 624,631 + -0.8 624,631 + +0.9 624,631 + -0.6 624,632 - +0.9 624,635 - +0.9 624,674 - +0.9 624,757 + Pf6N2E2_552 0.24 -0.1 624,758 - Pf6N2E2_552 0.24 -0.1 624,917 + Pf6N2E2_552 0.60 +0.9 625,110 + -0.7 625,296 + Pf6N2E2_553 0.38 -0.1 625,297 - Pf6N2E2_553 0.38 +0.9 625,297 - Pf6N2E2_553 0.38 -0.1 625,297 - Pf6N2E2_553 0.38 +0.9 625,389 + Pf6N2E2_553 0.56 -0.1 625,518 + Pf6N2E2_553 0.82 +0.9 625,518 + Pf6N2E2_553 0.82 +0.9 625,519 - Pf6N2E2_553 0.82 +0.9 625,633 + +0.9 625,633 + -0.5 625,633 + +0.9 625,633 + +0.3 625,633 + -1.5 625,634 - +0.9 625,634 - -0.7 625,634 - -0.1 625,634 - +0.9 625,634 - +0.9 625,634 - +1.9 625,654 - +0.9 625,654 - +0.9 625,767 + -1.7 625,767 + +0.9 625,767 + +0.9 625,768 - +0.9 625,775 + -0.1 625,776 - -0.4 625,783 + -0.7 625,783 + -0.9 625,783 + +0.9 625,783 + +0.9 625,783 + -0.1 625,784 - +0.9 625,784 - +0.9 625,791 + +0.9 625,791 + -1.7 625,814 - +0.9 625,902 - -1.1 625,902 - +0.9 626,003 + Pf6N2E2_554 0.13 -0.1 626,027 + Pf6N2E2_554 0.15 +0.9 626,027 + Pf6N2E2_554 0.15 -0.7 626,028 - Pf6N2E2_554 0.15 -1.1 626,035 + Pf6N2E2_554 0.16 +0.9 626,035 + Pf6N2E2_554 0.16 -0.5 626,035 + Pf6N2E2_554 0.16 +0.0 626,035 + Pf6N2E2_554 0.16 +0.9 626,035 + Pf6N2E2_554 0.16 +0.9 626,036 - Pf6N2E2_554 0.16 +0.9 626,036 - Pf6N2E2_554 0.16 +0.9 626,036 - Pf6N2E2_554 0.16 -0.1 626,036 - Pf6N2E2_554 0.16 -0.7 626,036 - Pf6N2E2_554 0.16 -0.2 626,036 - Pf6N2E2_554 0.16 +0.9 626,090 + Pf6N2E2_554 0.19 -0.1
Or see this region's nucleotide sequence