Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5120

Experiment: Ying_Nucleobase14 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 2
5,902,402	+		Pf6N2E2_5118	0.87	+1.1
5,902,423	+		Pf6N2E2_5118	0.87	+0.1
5,902,423	+		Pf6N2E2_5118	0.87	+1.1
5,902,424	-		Pf6N2E2_5118	0.87	-0.5
5,902,438	+		Pf6N2E2_5118	0.88	+1.1
5,902,438	+		Pf6N2E2_5118	0.88	-0.9
5,902,439	-		Pf6N2E2_5118	0.88	-0.9
5,902,439	-		Pf6N2E2_5118	0.88	+0.1
5,902,439	-		Pf6N2E2_5118	0.88	+0.1
5,902,439	-		Pf6N2E2_5118	0.88	-0.5
5,902,588	-				+0.1
5,902,588	-				-0.5
5,902,600	+				-0.9
5,902,600	+				+0.3
5,902,600	+				+1.1
5,902,600	+				+1.1
5,902,600	+				+0.1
5,902,600	+				-0.7
5,902,600	+				-0.7
5,902,601	-				+1.1
5,902,601	-				+1.1
5,902,601	-				+1.1
5,902,811	+				+1.1
5,902,811	+				+0.1
5,902,811	+				+0.1
5,902,811	+				-0.5
5,902,811	+				+0.1
5,902,811	+				-0.2
5,902,811	+				+1.1
5,902,812	-				+1.1
5,902,812	-				-0.5
5,902,812	-				+0.1
5,902,812	-				+0.1
5,902,812	-				+1.1
5,902,929	+		Pf6N2E2_5119	0.25	+0.2
5,902,929	+		Pf6N2E2_5119	0.25	+0.1
5,902,930	-		Pf6N2E2_5119	0.25	+0.1
5,902,930	-		Pf6N2E2_5119	0.25	+0.1
5,902,930	-		Pf6N2E2_5119	0.25	+0.1
5,902,998	+		Pf6N2E2_5119	0.42	+1.1
5,902,999	-		Pf6N2E2_5119	0.42	+0.2
5,902,999	-		Pf6N2E2_5119	0.42	+1.1
5,903,002	-		Pf6N2E2_5119	0.43	+0.1
5,903,058	+		Pf6N2E2_5119	0.57	+1.1
5,903,058	+		Pf6N2E2_5119	0.57	-0.9
5,903,058	+		Pf6N2E2_5119	0.57	+0.8
5,903,058	+		Pf6N2E2_5119	0.57	+0.1
5,903,059	-		Pf6N2E2_5119	0.57	+0.1
5,903,060	+		Pf6N2E2_5119	0.57	-0.5
5,903,060	+		Pf6N2E2_5119	0.57	+1.1
5,903,269	+				-0.3
5,903,269	+				-1.5
5,903,269	+				+0.5
5,903,270	-				+1.1
5,903,446	+		Pf6N2E2_5120	0.14	+1.1
5,903,459	-		Pf6N2E2_5120	0.16	-0.5
5,903,460	+		Pf6N2E2_5120	0.16	-0.5
5,903,461	-		Pf6N2E2_5120	0.16	+1.1
5,903,461	-		Pf6N2E2_5120	0.16	+1.1
5,903,525	+		Pf6N2E2_5120	0.22	+1.1
5,903,572	+		Pf6N2E2_5120	0.26	-0.5
5,903,572	+		Pf6N2E2_5120	0.26	-0.0
5,903,573	-		Pf6N2E2_5120	0.26	+1.1
5,903,573	-		Pf6N2E2_5120	0.26	-0.3
5,903,707	+		Pf6N2E2_5120	0.38	-1.7
5,903,707	+		Pf6N2E2_5120	0.38	-0.1
5,903,707	+		Pf6N2E2_5120	0.38	-1.2
5,903,707	+		Pf6N2E2_5120	0.38	+0.1
5,903,707	+		Pf6N2E2_5120	0.38	+1.1
5,903,707	+		Pf6N2E2_5120	0.38	-0.4
5,903,707	+		Pf6N2E2_5120	0.38	+0.1
5,903,708	-		Pf6N2E2_5120	0.38	-1.9
5,903,708	-		Pf6N2E2_5120	0.38	+1.1
5,903,733	+		Pf6N2E2_5120	0.41	-0.0
5,903,734	-		Pf6N2E2_5120	0.41	+0.1
5,903,977	+		Pf6N2E2_5120	0.63	-0.1
5,903,977	+		Pf6N2E2_5120	0.63	+1.1
5,903,977	+		Pf6N2E2_5120	0.63	+0.1
5,903,978	-		Pf6N2E2_5120	0.63	+1.1
5,904,069	+		Pf6N2E2_5120	0.71	+0.3
5,904,223	+		Pf6N2E2_5120	0.85	+0.5
5,904,223	+		Pf6N2E2_5120	0.85	+0.1
5,904,223	+		Pf6N2E2_5120	0.85	+1.1
5,904,224	-		Pf6N2E2_5120	0.85	+1.1
5,904,224	-		Pf6N2E2_5120	0.85	+1.1
5,904,224	-		Pf6N2E2_5120	0.85	-0.5
5,904,224	-		Pf6N2E2_5120	0.85	+1.1
5,904,224	-		Pf6N2E2_5120	0.85	+1.1
5,904,224	-		Pf6N2E2_5120	0.85	+1.2
5,904,224	-		Pf6N2E2_5120	0.85	+1.1
5,904,274	+		Pf6N2E2_5120	0.90	+1.1
5,904,385	+				+1.1
5,904,385	+				-0.5
5,904,385	+				-0.9
5,904,385	+				-0.5
5,904,385	+				+0.1
5,904,385	+				+1.1
5,904,386	-				+1.1
5,904,386	-				+1.1
5,904,386	-				-0.5
5,904,386	-				+1.1
5,904,386	-				+0.1
5,904,443	+				+0.4
5,904,443	+				+1.1
5,904,443	+				+1.1
5,904,443	+				-0.9
5,904,443	+				-0.7
5,904,443	+				+1.1
5,904,443	+				-0.5
5,904,443	+				+0.1
5,904,443	+				+0.1
5,904,444	-				+0.1
5,904,444	-				+0.1
5,904,444	-				+1.1
5,904,444	-				-1.3
5,904,447	+				+1.1
5,904,447	+				-0.3
5,904,447	+				-1.3
5,904,448	-				-0.3
5,904,448	-				+1.1
5,904,448	-				+1.1
5,904,469	+				+1.1
5,904,469	+				-0.5
5,904,469	+				+1.1
5,904,469	+				+1.1
5,904,471	+				-0.7
5,904,471	+				+1.1
5,904,471	+				-0.1
5,904,471	+				+0.5
5,904,471	+				+1.1
5,904,471	+				-1.3
5,904,471	+				+1.1
5,904,471	+				+0.1
5,904,471	+				+0.1
5,904,471	+				+0.1
5,904,471	+				-0.2
5,904,471	+				+0.1
5,904,471	+				+1.1
5,904,471	+				-0.5
5,904,472	-				+1.1
5,904,472	-				+3.1
5,904,472	-				+1.1
5,904,472	-				+0.1
5,904,472	-				+0.1
5,904,678	-				-0.3
5,904,678	-				-0.5
5,904,704	+				+0.1
5,904,704	+				+0.1
5,904,705	-				-1.9
5,904,713	+				+1.1
5,904,713	+				+1.1
5,904,713	+				-0.9
5,904,713	+				+0.1
5,904,732	+				+1.1
5,904,761	+				+1.1
5,904,761	+				+1.1
5,904,761	+				-0.9
5,904,761	+				-1.3
5,904,762	-				+0.1
5,904,809	+				+0.1
5,904,810	-				+0.1
5,904,928	+				+1.1
5,904,928	+				+1.1
5,904,929	-				+1.1
5,904,929	-				-0.2
5,904,931	+				+1.1
5,904,932	-				+1.1
5,904,932	-				-0.2
5,904,932	-				-0.3
5,904,932	-				-0.3
5,904,932	-				+1.1
5,904,932	-				+0.1
5,904,932	-				+1.1
5,904,932	-				+0.1
5,904,932	-				+0.1
5,904,932	-				+0.1
5,904,932	-				+1.1
5,904,998	+				-1.4
5,904,998	+				-1.0
5,904,998	+				-0.5
5,904,998	+				-0.9
5,904,998	+				-1.7
5,904,999	-				-0.5
5,904,999	-				+1.1
5,904,999	-				+1.1
5,904,999	-				+1.1
5,904,999	-				-2.8
5,905,207	+				+0.5
5,905,207	+				+0.8
5,905,208	-				+0.1
5,905,252	-				+0.1
5,905,252	-				-0.5
5,905,285	+				+0.1
5,905,285	+				+1.1
5,905,289	+				-0.9
5,905,290	-				-0.8
5,905,290	-				-0.9
5,905,290	-				-0.4
5,905,290	-				+1.1
5,905,290	-				-0.9
5,905,306	-				+0.1
5,905,351	+				+0.1