Experiment: Ying_Nucleobase14 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_440 and Pf6N2E2_441 are separated by 203 nucleotides Pf6N2E2_441 and Pf6N2E2_442 are separated by 109 nucleotides Pf6N2E2_442 and Pf6N2E2_443 are separated by 0 nucleotides Pf6N2E2_443 and Pf6N2E2_444 are separated by 126 nucleotides Pf6N2E2_444 and Pf6N2E2_445 are separated by 234 nucleotides
Pf6N2E2_440 - FIG00954920: hypothetical protein, at 505,072 to 505,374
_440
Pf6N2E2_441 - FIG00958773: hypothetical protein, at 505,578 to 505,928
_441
Pf6N2E2_442 - FIG00962345: hypothetical protein, at 506,038 to 506,268
_442
Pf6N2E2_443 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 506,269 to 506,550
_443
Pf6N2E2_444 - hypothetical protein, at 506,677 to 506,892
_444
Pf6N2E2_445 - UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9), at 507,127 to 507,966
_445
Position (kb) 506
507 Strain fitness (log2 ratio) -1
0
1 at 505.269 kb on + strand, within Pf6N2E2_440 at 505.440 kb on + strand at 505.441 kb on - strand at 505.457 kb on - strand at 505.457 kb on - strand at 505.457 kb on - strand at 505.459 kb on + strand at 505.491 kb on - strand at 505.491 kb on - strand at 505.511 kb on + strand at 505.512 kb on - strand at 505.577 kb on + strand at 505.577 kb on + strand at 505.577 kb on + strand at 505.577 kb on + strand at 505.577 kb on + strand at 505.692 kb on + strand, within Pf6N2E2_441 at 505.693 kb on - strand, within Pf6N2E2_441 at 505.971 kb on + strand at 505.971 kb on + strand at 505.972 kb on - strand at 505.972 kb on - strand at 506.024 kb on + strand at 506.024 kb on + strand at 506.024 kb on + strand at 506.024 kb on + strand at 506.025 kb on - strand at 506.025 kb on - strand at 506.079 kb on + strand, within Pf6N2E2_442 at 506.079 kb on + strand, within Pf6N2E2_442 at 506.079 kb on + strand, within Pf6N2E2_442 at 506.079 kb on + strand, within Pf6N2E2_442 at 506.079 kb on + strand, within Pf6N2E2_442 at 506.080 kb on - strand, within Pf6N2E2_442 at 506.080 kb on - strand, within Pf6N2E2_442 at 506.223 kb on + strand, within Pf6N2E2_442 at 506.270 kb on + strand at 506.270 kb on + strand at 506.270 kb on + strand at 506.271 kb on - strand at 506.271 kb on - strand at 506.271 kb on - strand at 506.414 kb on + strand, within Pf6N2E2_443 at 506.483 kb on + strand, within Pf6N2E2_443 at 506.483 kb on + strand, within Pf6N2E2_443 at 506.484 kb on - strand, within Pf6N2E2_443 at 506.526 kb on + strand at 506.526 kb on + strand at 506.527 kb on - strand at 506.591 kb on - strand at 506.591 kb on - strand at 506.591 kb on - strand at 506.615 kb on + strand at 506.615 kb on + strand at 506.616 kb on - strand at 506.659 kb on + strand at 506.659 kb on + strand at 506.659 kb on + strand at 506.659 kb on + strand at 506.659 kb on + strand at 506.660 kb on - strand at 506.660 kb on - strand at 506.660 kb on - strand at 506.662 kb on + strand at 506.662 kb on + strand at 506.662 kb on + strand at 506.662 kb on + strand at 506.679 kb on - strand at 506.819 kb on + strand, within Pf6N2E2_444 at 506.819 kb on + strand, within Pf6N2E2_444 at 506.819 kb on + strand, within Pf6N2E2_444 at 506.819 kb on + strand, within Pf6N2E2_444 at 506.820 kb on - strand, within Pf6N2E2_444 at 506.820 kb on - strand, within Pf6N2E2_444 at 506.820 kb on - strand, within Pf6N2E2_444 at 506.894 kb on + strand at 506.894 kb on + strand at 506.894 kb on + strand at 506.894 kb on + strand at 506.894 kb on + strand at 506.894 kb on + strand at 506.895 kb on - strand at 506.895 kb on - strand at 506.895 kb on - strand at 506.930 kb on - strand at 506.930 kb on - strand at 506.930 kb on - strand at 506.930 kb on - strand at 506.930 kb on - strand at 506.955 kb on + strand at 506.955 kb on + strand at 507.029 kb on + strand at 507.029 kb on + strand at 507.030 kb on - strand at 507.030 kb on - strand at 507.030 kb on - strand at 507.030 kb on - strand at 507.062 kb on + strand at 507.063 kb on - strand at 507.063 kb on - strand at 507.063 kb on - strand at 507.063 kb on - strand at 507.063 kb on - strand at 507.082 kb on + strand at 507.082 kb on + strand at 507.082 kb on + strand at 507.083 kb on - strand at 507.083 kb on - strand at 507.124 kb on + strand at 507.124 kb on + strand at 507.124 kb on + strand at 507.125 kb on - strand at 507.125 kb on - strand at 507.125 kb on - strand at 507.126 kb on + strand at 507.126 kb on + strand at 507.126 kb on + strand at 507.126 kb on + strand at 507.126 kb on + strand at 507.127 kb on - strand at 507.127 kb on - strand at 507.127 kb on - strand at 507.186 kb on + strand at 507.187 kb on - strand at 507.187 kb on - strand at 507.334 kb on + strand, within Pf6N2E2_445 at 507.334 kb on + strand, within Pf6N2E2_445 at 507.335 kb on - strand, within Pf6N2E2_445 at 507.376 kb on + strand, within Pf6N2E2_445 at 507.421 kb on + strand, within Pf6N2E2_445 at 507.548 kb on + strand, within Pf6N2E2_445 at 507.548 kb on + strand, within Pf6N2E2_445
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 2 remove 505,269 + Pf6N2E2_440 0.65 +0.9 505,440 + -0.1 505,441 - +0.9 505,457 - +0.4 505,457 - -0.1 505,457 - +0.9 505,459 + +0.9 505,491 - -0.5 505,491 - +0.3 505,511 + -0.7 505,512 - -0.3 505,577 + -0.9 505,577 + +0.9 505,577 + -0.1 505,577 + +0.9 505,577 + +0.9 505,692 + Pf6N2E2_441 0.32 -0.4 505,693 - Pf6N2E2_441 0.33 +0.9 505,971 + +0.9 505,971 + +0.9 505,972 - +0.9 505,972 - -0.7 506,024 + -0.4 506,024 + +0.9 506,024 + +0.9 506,024 + -0.1 506,025 - +0.9 506,025 - -1.1 506,079 + Pf6N2E2_442 0.18 -0.2 506,079 + Pf6N2E2_442 0.18 +0.9 506,079 + Pf6N2E2_442 0.18 +0.9 506,079 + Pf6N2E2_442 0.18 -0.3 506,079 + Pf6N2E2_442 0.18 -0.7 506,080 - Pf6N2E2_442 0.18 +0.9 506,080 - Pf6N2E2_442 0.18 -0.1 506,223 + Pf6N2E2_442 0.80 +0.9 506,270 + +0.9 506,270 + -0.1 506,270 + +0.9 506,271 - -0.1 506,271 - -0.1 506,271 - +0.9 506,414 + Pf6N2E2_443 0.51 -0.1 506,483 + Pf6N2E2_443 0.76 -0.1 506,483 + Pf6N2E2_443 0.76 +0.9 506,484 - Pf6N2E2_443 0.76 -0.7 506,526 + -0.5 506,526 + -0.1 506,527 - +0.9 506,591 - +0.9 506,591 - +0.9 506,591 - +0.9 506,615 + +0.9 506,615 + +0.9 506,616 - +0.9 506,659 + +0.9 506,659 + +0.9 506,659 + +0.9 506,659 + -0.1 506,659 + -0.1 506,660 - -0.1 506,660 - -0.1 506,660 - +0.9 506,662 + -1.1 506,662 + +0.7 506,662 + -0.4 506,662 + -1.1 506,679 - +0.2 506,819 + Pf6N2E2_444 0.66 -0.3 506,819 + Pf6N2E2_444 0.66 -1.1 506,819 + Pf6N2E2_444 0.66 -0.3 506,819 + Pf6N2E2_444 0.66 +0.9 506,820 - Pf6N2E2_444 0.66 +0.9 506,820 - Pf6N2E2_444 0.66 -0.1 506,820 - Pf6N2E2_444 0.66 -0.4 506,894 + +0.9 506,894 + -1.4 506,894 + +0.9 506,894 + +0.9 506,894 + +0.4 506,894 + +0.9 506,895 - +0.9 506,895 - -0.1 506,895 - +0.9 506,930 - -0.2 506,930 - -0.2 506,930 - -0.4 506,930 - -0.1 506,930 - -0.4 506,955 + -1.1 506,955 + -0.1 507,029 + +0.9 507,029 + -0.5 507,030 - +0.9 507,030 - +0.9 507,030 - +0.9 507,030 - +0.9 507,062 + +0.9 507,063 - +0.9 507,063 - -0.1 507,063 - +0.9 507,063 - +0.9 507,063 - +0.9 507,082 + +0.0 507,082 + -0.1 507,082 + +0.9 507,083 - -0.4 507,083 - -1.4 507,124 + -0.1 507,124 + +0.9 507,124 + +0.9 507,125 - +0.9 507,125 - +0.9 507,125 - +0.9 507,126 + +0.9 507,126 + +0.3 507,126 + +0.9 507,126 + +0.5 507,126 + +0.9 507,127 - -1.3 507,127 - -0.1 507,127 - -0.2 507,186 + +0.9 507,187 - +0.9 507,187 - -1.1 507,334 + Pf6N2E2_445 0.25 -0.1 507,334 + Pf6N2E2_445 0.25 -0.5 507,335 - Pf6N2E2_445 0.25 -0.1 507,376 + Pf6N2E2_445 0.30 -0.1 507,421 + Pf6N2E2_445 0.35 +0.9 507,548 + Pf6N2E2_445 0.50 +0.9 507,548 + Pf6N2E2_445 0.50 -0.6
Or see this region's nucleotide sequence