Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4139

Experiment: Ying_Nucleobase14 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 2
4,816,649	+		Pf6N2E2_4138	0.29	+0.1
4,816,650	-		Pf6N2E2_4138	0.29	-0.1
4,816,650	-		Pf6N2E2_4138	0.29	+0.1
4,816,738	+		Pf6N2E2_4138	0.36	-0.7
4,816,738	+		Pf6N2E2_4138	0.36	+0.2
4,816,841	+		Pf6N2E2_4138	0.44	-0.5
4,816,841	+		Pf6N2E2_4138	0.44	+0.5
4,816,841	+		Pf6N2E2_4138	0.44	-0.5
4,816,842	-		Pf6N2E2_4138	0.44	+1.1
4,816,842	-		Pf6N2E2_4138	0.44	+0.1
4,816,842	-		Pf6N2E2_4138	0.44	+1.1
4,816,842	-		Pf6N2E2_4138	0.44	-0.5
4,816,842	-		Pf6N2E2_4138	0.44	-0.9
4,816,847	+		Pf6N2E2_4138	0.44	-0.0
4,816,847	+		Pf6N2E2_4138	0.44	-0.5
4,816,847	+		Pf6N2E2_4138	0.44	+1.1
4,816,847	+		Pf6N2E2_4138	0.44	-1.0
4,816,847	+		Pf6N2E2_4138	0.44	-0.7
4,816,847	+		Pf6N2E2_4138	0.44	-0.5
4,816,847	+		Pf6N2E2_4138	0.44	+1.1
4,816,847	+		Pf6N2E2_4138	0.44	-0.4
4,816,848	-		Pf6N2E2_4138	0.45	+1.1
4,816,848	-		Pf6N2E2_4138	0.45	+2.1
4,816,848	-		Pf6N2E2_4138	0.45	+0.1
4,816,848	-		Pf6N2E2_4138	0.45	+0.7
4,816,848	-		Pf6N2E2_4138	0.45	-1.2
4,816,848	-		Pf6N2E2_4138	0.45	+0.1
4,816,848	-		Pf6N2E2_4138	0.45	-0.5
4,816,848	-		Pf6N2E2_4138	0.45	+1.1
4,816,848	-		Pf6N2E2_4138	0.45	+1.1
4,816,848	-		Pf6N2E2_4138	0.45	-0.2
4,816,848	-		Pf6N2E2_4138	0.45	-0.9
4,817,069	+		Pf6N2E2_4138	0.61	-0.2
4,817,070	-		Pf6N2E2_4138	0.62	+0.1
4,817,070	-		Pf6N2E2_4138	0.62	-0.1
4,817,156	-		Pf6N2E2_4138	0.68	-0.5
4,817,244	-		Pf6N2E2_4138	0.75	-0.9
4,817,244	-		Pf6N2E2_4138	0.75	+0.1
4,817,244	-		Pf6N2E2_4138	0.75	-0.5
4,817,268	+		Pf6N2E2_4138	0.77	+0.1
4,817,269	-		Pf6N2E2_4138	0.77	+1.1
4,817,269	-		Pf6N2E2_4138	0.77	+1.1
4,817,309	+		Pf6N2E2_4138	0.80	+1.1
4,817,309	+		Pf6N2E2_4138	0.80	+0.1
4,817,309	+		Pf6N2E2_4138	0.80	+1.6
4,817,310	-		Pf6N2E2_4138	0.80	-0.0
4,817,352	-		Pf6N2E2_4138	0.83	+1.1
4,817,352	-		Pf6N2E2_4138	0.83	+0.1
4,817,413	-		Pf6N2E2_4138	0.88	+1.1
4,817,435	+		Pf6N2E2_4138	0.89	+0.1
4,817,435	+		Pf6N2E2_4138	0.89	+1.1
4,817,436	-		Pf6N2E2_4138	0.90	+0.1
4,817,436	-		Pf6N2E2_4138	0.90	+0.9
4,817,436	-		Pf6N2E2_4138	0.90	-0.7
4,817,436	-		Pf6N2E2_4138	0.90	-0.6
4,817,436	-		Pf6N2E2_4138	0.90	+0.5
4,817,436	-		Pf6N2E2_4138	0.90	+0.1
4,817,502	+				+1.1
4,817,503	-				-0.6
4,817,520	+				+0.1
4,817,520	+				-0.2
4,817,521	-				-1.2
4,817,521	-				-0.4
4,817,521	-				-1.7
4,817,521	-				-0.5
4,817,521	-				-0.7
4,817,521	-				+1.1
4,817,521	-				-1.2
4,817,521	-				-0.5
4,817,568	+				-0.8
4,817,568	+				+1.1
4,817,568	+				+1.1
4,817,568	+				-1.9
4,817,569	-				-0.5
4,817,569	-				-0.7
4,817,569	-				-0.3
4,817,569	-				-0.4
4,817,569	-				-0.8
4,817,570	+				-1.1
4,817,570	+				+1.1
4,817,570	+				+0.1
4,817,570	+				-0.9
4,817,570	+				+0.1
4,817,571	-				-0.5
4,817,571	-				-1.1
4,817,571	-				-0.4
4,817,571	-				+1.5
4,817,571	-				+0.3
4,817,608	+				+1.1
4,817,608	+				-0.2
4,817,608	+				-0.9
4,817,608	+				+0.1
4,817,608	+				-0.9
4,817,609	-				-0.1
4,817,609	-				-0.6
4,817,609	-				-0.5
4,817,609	-				-0.5
4,817,947	+		Pf6N2E2_4139	0.41	+0.3
4,817,947	+		Pf6N2E2_4139	0.41	-0.3
4,817,947	+		Pf6N2E2_4139	0.41	-0.5
4,817,947	+		Pf6N2E2_4139	0.41	-0.3
4,817,947	+		Pf6N2E2_4139	0.41	-0.3
4,817,947	+		Pf6N2E2_4139	0.41	-0.4
4,817,947	+		Pf6N2E2_4139	0.41	-0.4
4,817,947	+				+0.5
4,817,947	+		Pf6N2E2_4139	0.41	-0.4
4,817,947	+		Pf6N2E2_4139	0.41	-0.4
4,817,948	-				+1.1
4,817,948	-		Pf6N2E2_4139	0.41	-0.3
4,817,948	-		Pf6N2E2_4139	0.41	-0.4
4,817,948	-		Pf6N2E2_4139	0.41	-0.2
4,817,948	-		Pf6N2E2_4139	0.41	-0.3
4,817,948	-		Pf6N2E2_4139	0.41	-0.3
4,817,948	-		Pf6N2E2_4139	0.41	-0.3
4,817,948	-		Pf6N2E2_4139	0.41	-0.4
4,817,948	-		Pf6N2E2_4139	0.41	-0.4
4,817,948	-		Pf6N2E2_4139	0.41	-0.4
4,817,948	-		Pf6N2E2_4139	0.41	-0.4
4,818,013	+		Pf6N2E2_4139	0.50	-0.5
4,818,013	+		Pf6N2E2_4139	0.50	-0.3
4,818,013	+		Pf6N2E2_4139	0.50	-1.9
4,818,013	+		Pf6N2E2_4139	0.50	-0.4
4,818,013	+		Pf6N2E2_4139	0.50	-0.5
4,818,013	+		Pf6N2E2_4139	0.50	-0.3
4,818,013	+		Pf6N2E2_4139	0.50	-0.3
4,818,013	+		Pf6N2E2_4139	0.50	-0.3
4,818,013	+		Pf6N2E2_4139	0.50	-0.3
4,818,013	+		Pf6N2E2_4139	0.50	-0.4
4,818,014	-		Pf6N2E2_4139	0.50	-0.4
4,818,014	-		Pf6N2E2_4139	0.50	+0.1
4,818,014	-		Pf6N2E2_4139	0.50	-0.6
4,818,014	-		Pf6N2E2_4139	0.50	-0.5
4,818,014	-		Pf6N2E2_4139	0.50	-0.4
4,818,014	-		Pf6N2E2_4139	0.50	-0.2
4,818,014	-		Pf6N2E2_4139	0.50	-0.4
4,818,014	-		Pf6N2E2_4139	0.50	-0.4
4,818,014	-		Pf6N2E2_4139	0.50	-0.4
4,818,271	+		Pf6N2E2_4139	0.83	-1.2
4,818,271	+		Pf6N2E2_4139	0.83	+0.1
4,818,272	-		Pf6N2E2_4139	0.83	+1.1
4,818,277	+		Pf6N2E2_4139	0.84	-0.5
4,818,277	+		Pf6N2E2_4139	0.84	-0.5
4,818,277	+		Pf6N2E2_4139	0.84	+1.1
4,818,277	+		Pf6N2E2_4139	0.84	+0.3
4,818,384	+				-1.2
4,818,384	+				+1.1
4,818,385	-				+1.1
4,818,398	-				+0.1
4,818,497	+				+0.1
4,818,499	+				+1.1
4,818,499	+				-0.5
4,818,499	+				+1.1
4,818,499	+				+0.1
4,818,499	+				+0.3
4,818,500	-				-0.9
4,818,500	-				+1.1
4,818,500	-				+2.1
4,818,500	-				+1.1
4,818,500	-				-0.9
4,818,500	-				-0.9
4,818,500	-				-0.5
4,818,500	-				+0.1
4,818,500	-				+0.1
4,818,500	-				+0.1
4,818,523	+				-0.9
4,818,524	-				-1.7
4,818,524	-				-0.5
4,818,524	-				+0.1
4,818,529	+				+1.1
4,818,530	-				+1.1
4,818,530	-				+0.1
4,818,530	-				+0.1
4,818,530	-				-0.6
4,818,557	+				-0.1
4,818,558	-				-0.9
4,818,594	+				-0.5
4,818,595	-				-0.5
4,818,595	-				-0.5
4,818,595	-				+1.1
4,818,595	-				-0.7
4,818,595	-				+0.6
4,818,595	-				+0.1
4,818,601	+				+1.1
4,818,601	+				-0.1
4,818,601	+				+1.1
4,818,601	+				-0.5
4,818,601	+				-0.5
4,818,601	+				-1.2
4,818,601	+				+0.1
4,818,601	+				+0.1
4,818,601	+				-0.7
4,818,601	+				+1.1
4,818,601	+				+1.1
4,818,601	+				-0.2
4,818,601	+				+1.1
4,818,601	+				+0.1
4,818,601	+				+0.1
4,818,601	+				-1.2
4,818,602	-				+1.1
4,818,602	-				-0.5
4,818,602	-				+1.1
4,818,602	-				-1.7
4,818,602	-				+1.1
4,818,602	-				+0.1
4,818,602	-				+0.1
4,818,602	-				+1.1
4,818,602	-				-0.5
4,818,602	-				-0.8
4,818,602	-				+0.5
4,818,602	-				-0.9
4,818,602	-				+1.1
4,818,602	-				+0.1
4,818,602	-				+0.1
4,818,602	-				+0.5
4,818,602	-				+0.1
4,818,602	-				+1.1
4,818,602	-				+0.1
4,818,605	+				+1.1
4,818,605	+				-0.7
4,818,605	+				-0.5
4,818,606	-				+0.1
4,818,652	+				+2.7
4,818,725	-				-0.5
4,818,752	+				+1.1
4,818,752	+				+1.1
4,818,752	+				+2.1
4,818,752	+				+1.1
4,818,752	+				+1.1
4,818,753	-				+1.1
4,819,223	+		Pf6N2E2_4140	0.33	+0.1
4,819,332	+		Pf6N2E2_4140	0.40	-1.2
4,819,332	+		Pf6N2E2_4140	0.40	+0.3