Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3810

Experiment: Ying_Nucleobase14 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 2
4,438,591	+		Pf6N2E2_3808	0.87	+0.1
4,438,591	+		Pf6N2E2_3808	0.87	+1.1
4,438,592	-		Pf6N2E2_3808	0.87	+1.1
4,438,592	-		Pf6N2E2_3808	0.87	+1.1
4,438,592	-		Pf6N2E2_3808	0.87	+0.1
4,438,659	-				+1.1
4,438,760	+				+0.1
4,438,760	+				-0.5
4,438,761	-				-0.5
4,438,761	-				+0.1
4,438,775	-				+0.1
4,438,826	+				-0.2
4,438,826	+				+0.3
4,438,827	-				+0.1
4,438,827	-				-0.2
4,438,838	+				+1.9
4,438,838	+				+1.1
4,438,839	-				-0.7
4,438,876	+				+0.1
4,438,876	+				+0.2
4,438,876	+				+0.1
4,438,876	+				+0.1
4,438,876	+				-0.4
4,438,877	-				-1.2
4,438,877	-				-0.3
4,438,950	+		Pf6N2E2_3809	0.11	+0.1
4,438,951	-		Pf6N2E2_3809	0.11	+0.7
4,438,951	-		Pf6N2E2_3809	0.11	+0.1
4,439,032	-		Pf6N2E2_3809	0.25	-0.5
4,439,032	-		Pf6N2E2_3809	0.25	-0.9
4,439,032	-		Pf6N2E2_3809	0.25	+1.1
4,439,067	+		Pf6N2E2_3809	0.31	+0.1
4,439,067	+		Pf6N2E2_3809	0.31	+1.1
4,439,067	+		Pf6N2E2_3809	0.31	-0.5
4,439,068	-		Pf6N2E2_3809	0.32	-1.7
4,439,068	-		Pf6N2E2_3809	0.32	-0.5
4,439,068	-		Pf6N2E2_3809	0.32	-0.6
4,439,082	+		Pf6N2E2_3809	0.34	+1.1
4,439,082	+		Pf6N2E2_3809	0.34	-0.5
4,439,082	+		Pf6N2E2_3809	0.34	-0.3
4,439,082	+		Pf6N2E2_3809	0.34	+0.1
4,439,082	+		Pf6N2E2_3809	0.34	+1.1
4,439,082	+		Pf6N2E2_3809	0.34	+0.1
4,439,083	-		Pf6N2E2_3809	0.34	+0.1
4,439,083	-		Pf6N2E2_3809	0.34	+1.1
4,439,083	-		Pf6N2E2_3809	0.34	+0.1
4,439,083	-		Pf6N2E2_3809	0.34	-0.5
4,439,095	-		Pf6N2E2_3809	0.36	+0.1
4,439,271	+		Pf6N2E2_3809	0.67	+0.1
4,439,271	+		Pf6N2E2_3809	0.67	-0.5
4,439,271	+		Pf6N2E2_3809	0.67	+0.1
4,439,272	-		Pf6N2E2_3809	0.68	-0.3
4,439,272	-		Pf6N2E2_3809	0.68	+1.1
4,439,272	-		Pf6N2E2_3809	0.68	+1.1
4,439,307	+		Pf6N2E2_3809	0.74	-0.5
4,439,307	+		Pf6N2E2_3809	0.74	+1.1
4,439,308	-		Pf6N2E2_3809	0.74	-0.3
4,439,308	-		Pf6N2E2_3809	0.74	-1.7
4,439,308	-		Pf6N2E2_3809	0.74	+1.1
4,439,308	-		Pf6N2E2_3809	0.74	+1.1
4,439,308	-		Pf6N2E2_3809	0.74	-0.9
4,439,332	-		Pf6N2E2_3809	0.78	+0.1
4,439,447	+				+0.1
4,439,459	+				+1.1
4,439,494	+				+0.1
4,439,494	+				+0.1
4,439,495	-				+0.1
4,439,495	-				-0.7
4,439,509	-				+0.1
4,439,525	+				+1.1
4,439,526	-				-0.5
4,439,526	-				+1.1
4,439,526	-				+0.1
4,439,539	+				+0.1
4,439,539	+				+0.1
4,439,539	+				+0.1
4,439,540	-				-0.5
4,439,540	-				-0.7
4,439,540	-				-0.5
4,439,545	+				-0.0
4,439,545	+				+1.1
4,439,546	-				+1.1
4,439,546	-				+1.1
4,439,546	-				+1.1
4,439,566	+				+1.1
4,439,567	-				+1.1
4,439,567	-				-0.9
4,439,611	+		Pf6N2E2_3810	0.18	+1.1
4,439,743	+		Pf6N2E2_3810	0.70	+0.1
4,439,743	+		Pf6N2E2_3810	0.70	-0.5
4,439,744	-		Pf6N2E2_3810	0.70	+0.1
4,439,779	-		Pf6N2E2_3810	0.84	+0.1
4,439,804	+				+0.1
4,439,804	+				+0.1
4,439,805	-				+1.1
4,439,824	+				+1.1
4,439,824	+				+1.1
4,439,824	+				+2.1
4,439,825	-				+1.1
4,439,825	-				+0.1
4,439,825	-				-0.5
4,439,868	+				+1.1
4,439,868	+				-0.3
4,439,868	+				+1.1
4,439,869	-				+1.1
4,439,869	-				-0.5
4,439,869	-				-0.5
4,439,869	-				-2.2
4,439,884	+				+1.1
4,439,912	+				-1.5
4,439,912	+				-0.5
4,439,912	+				+1.1
4,439,913	-				-1.4
4,440,097	+				+1.1
4,440,097	+				-0.9
4,440,097	+				-1.7
4,440,097	+				+0.9
4,440,097	+				+0.1
4,440,098	-				-0.5
4,440,100	+				-0.5
4,440,128	+				+0.1
4,440,195	+				+1.1
4,440,381	+		Pf6N2E2_3811	0.14	-0.5
4,440,382	-		Pf6N2E2_3811	0.14	-0.9
4,440,489	+		Pf6N2E2_3811	0.20	+0.5
4,440,490	-		Pf6N2E2_3811	0.20	-1.0
4,440,490	-		Pf6N2E2_3811	0.20	+1.1
4,440,534	+		Pf6N2E2_3811	0.22	+1.1
4,440,534	+		Pf6N2E2_3811	0.22	+0.1
4,440,534	+		Pf6N2E2_3811	0.22	+1.1
4,440,534	+		Pf6N2E2_3811	0.22	+1.1
4,440,534	+		Pf6N2E2_3811	0.22	+2.1
4,440,534	+		Pf6N2E2_3811	0.22	+0.1
4,440,535	-		Pf6N2E2_3811	0.22	+0.1
4,440,535	-		Pf6N2E2_3811	0.22	+0.1
4,440,535	-		Pf6N2E2_3811	0.22	-1.1
4,440,762	+		Pf6N2E2_3811	0.34	+0.1