Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3663

Experiment: Ying_Nucleobase14 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 2
4,263,493	+		Pf6N2E2_3661	0.45	+1.1
4,263,493	+		Pf6N2E2_3661	0.45	+0.1
4,263,494	-		Pf6N2E2_3661	0.45	+1.1
4,263,494	-		Pf6N2E2_3661	0.45	-4.6
4,263,494	-		Pf6N2E2_3661	0.45	+1.1
4,263,563	-		Pf6N2E2_3661	0.53	+1.1
4,263,601	+		Pf6N2E2_3661	0.57	-5.1
4,263,601	+		Pf6N2E2_3661	0.57	+0.1
4,263,601	+		Pf6N2E2_3661	0.57	+0.1
4,263,602	-		Pf6N2E2_3661	0.57	+1.1
4,263,608	+		Pf6N2E2_3661	0.58	-5.6
4,263,609	-		Pf6N2E2_3661	0.58	-0.5
4,263,609	-		Pf6N2E2_3661	0.58	-5.6
4,263,609	-		Pf6N2E2_3661	0.58	+1.1
4,263,702	-		Pf6N2E2_3661	0.69	-4.6
4,263,720	-		Pf6N2E2_3661	0.71	-5.7
4,263,806	+		Pf6N2E2_3661	0.81	-4.1
4,263,962	+				-3.5
4,263,963	-				+1.1
4,263,995	+				+1.1
4,263,998	-				-4.9
4,263,998	-				-4.9
4,264,426	+				+0.1
4,264,427	-				-1.2
4,264,427	-				-1.7
4,264,475	-				+1.1
4,264,475	-				+1.1
4,264,495	+		Pf6N2E2_3663	0.11	+1.1
4,264,496	-		Pf6N2E2_3663	0.12	+1.1
4,264,667	+		Pf6N2E2_3663	0.30	-3.5
4,264,668	-		Pf6N2E2_3663	0.31	-0.9
4,264,668	-		Pf6N2E2_3663	0.31	-1.3
4,264,669	+		Pf6N2E2_3663	0.31	+1.1
4,264,670	-		Pf6N2E2_3663	0.31	+0.1
4,264,670	-		Pf6N2E2_3663	0.31	-1.4
4,264,670	-		Pf6N2E2_3663	0.31	+1.1
4,264,670	-		Pf6N2E2_3663	0.31	-1.2
4,264,670	-		Pf6N2E2_3663	0.31	+0.1
4,264,670	-		Pf6N2E2_3663	0.31	-0.5
4,264,768	+		Pf6N2E2_3663	0.42	-3.9
4,264,844	-		Pf6N2E2_3663	0.50	-1.7
4,264,941	-		Pf6N2E2_3663	0.61	-0.5
4,265,032	+		Pf6N2E2_3663	0.71	+1.1
4,265,032	+		Pf6N2E2_3663	0.71	+1.1
4,265,033	-		Pf6N2E2_3663	0.71	-0.5
4,265,033	-		Pf6N2E2_3663	0.71	-2.6
4,265,033	-		Pf6N2E2_3663	0.71	+0.1
4,265,033	-		Pf6N2E2_3663	0.71	-1.2
4,265,033	-		Pf6N2E2_3663	0.71	-1.4
4,265,033	-		Pf6N2E2_3663	0.71	-1.3
4,265,033	-		Pf6N2E2_3663	0.71	+1.1
4,265,033	-		Pf6N2E2_3663	0.71	+1.1
4,265,033	-		Pf6N2E2_3663	0.71	-1.5
4,265,033	-		Pf6N2E2_3663	0.71	+1.1
4,265,063	+		Pf6N2E2_3663	0.74	-2.8
4,265,252	-				-1.3
4,265,252	-				-1.9
4,265,255	+				-3.1
4,265,255	+				+0.3
4,265,256	-				-1.4
4,265,256	-				+1.1
4,265,257	+				+1.1
4,265,257	+				+0.1
4,265,257	+				-3.7
4,265,258	-				-1.2
4,265,258	-				-1.3
4,265,258	-				-1.6
4,265,258	-				-1.5
4,265,258	-				-1.8
4,265,295	-				-0.5
4,265,478	-		Pf6N2E2_3664	0.11	+0.1
4,265,481	-		Pf6N2E2_3664	0.11	-0.8
4,265,906	+		Pf6N2E2_3664	0.35	-3.6
4,265,922	-		Pf6N2E2_3664	0.36	+1.1
4,265,969	+		Pf6N2E2_3664	0.39	-3.2
4,265,969	+		Pf6N2E2_3664	0.39	-2.7
4,265,969	+		Pf6N2E2_3664	0.39	+1.1
4,265,970	-		Pf6N2E2_3664	0.39	-0.5
4,265,970	-		Pf6N2E2_3664	0.39	-1.2
4,265,970	-		Pf6N2E2_3664	0.39	+1.1
4,265,970	-		Pf6N2E2_3664	0.39	-0.5
4,265,970	-		Pf6N2E2_3664	0.39	-1.3
4,265,970	-		Pf6N2E2_3664	0.39	-0.3
4,265,970	-		Pf6N2E2_3664	0.39	+0.1
4,265,970	-		Pf6N2E2_3664	0.39	-1.2
4,265,970	-		Pf6N2E2_3664	0.39	+1.1
4,265,970	-		Pf6N2E2_3664	0.39	-1.6
4,266,131	+		Pf6N2E2_3664	0.48	+1.1
4,266,131	+		Pf6N2E2_3664	0.48	+1.1
4,266,132	-		Pf6N2E2_3664	0.48	+0.1
4,266,198	-				-0.2
4,266,198	-		Pf6N2E2_3664	0.52	-1.1
4,266,198	-		Pf6N2E2_3664	0.52	-0.0
4,266,198	-		Pf6N2E2_3664	0.52	-1.1
4,266,198	-		Pf6N2E2_3664	0.52	+1.1
4,266,264	-		Pf6N2E2_3664	0.56	+1.1
4,266,264	-		Pf6N2E2_3664	0.56	+1.1
4,266,264	-		Pf6N2E2_3664	0.56	-1.1
4,266,264	-		Pf6N2E2_3664	0.56	+1.1
4,266,285	+		Pf6N2E2_3664	0.57	+1.1
4,266,286	-		Pf6N2E2_3664	0.57	-1.5
4,266,286	-		Pf6N2E2_3664	0.57	+1.1
4,266,288	-		Pf6N2E2_3664	0.57	-1.2