Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3455

Experiment: Ying_Nucleobase14 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 2
4,023,902	+		Pf6N2E2_3454	0.89	-1.0
4,024,013	+				+1.0
4,024,192	+				-0.5
4,024,246	-				+0.0
4,024,246	-				+1.0
4,024,246	-				+0.0
4,024,343	-				+1.0
4,024,396	+				+1.0
4,024,563	+				+0.0
4,024,636	+				+0.4
4,024,636	+				-0.3
4,024,661	+				+0.6
4,024,693	+				+0.0
4,024,700	-				+1.0
4,024,730	+				+1.0
4,024,730	+				-0.4
4,024,735	-				+1.0
4,024,825	+				-1.0
4,024,826	-				+0.0
4,024,826	-				+1.0
4,024,905	-		Pf6N2E2_3455	0.16	+1.0
4,025,005	+		Pf6N2E2_3455	0.36	+1.0
4,025,006	-		Pf6N2E2_3455	0.36	-0.5
4,025,046	+		Pf6N2E2_3455	0.44	-1.8
4,025,046	+		Pf6N2E2_3455	0.44	+0.0
4,025,314	+				-1.4
4,025,314	+				+0.0
4,025,315	-				-0.5
4,025,375	+				+1.0
4,025,375	+				-1.0
4,025,376	-				+1.0
4,025,376	-				-0.5
4,025,376	-				-0.5
4,025,410	+				+1.0
4,025,410	+				+1.0
4,025,410	+				+1.0
4,025,410	+				+0.0
4,025,410	+				+0.0
4,025,410	+				+0.0
4,025,410	+				-0.5
4,025,411	-				+1.0
4,025,436	+				+0.0
4,025,436	+				+1.0
4,025,436	+				+2.0
4,025,436	+				+0.0
4,025,437	-				+1.0
4,025,749	+		Pf6N2E2_3456	0.33	-0.5
4,025,749	+		Pf6N2E2_3456	0.33	+1.0
4,025,750	-		Pf6N2E2_3456	0.33	+1.0
4,025,750	-		Pf6N2E2_3456	0.33	-0.5
4,026,002	+		Pf6N2E2_3456	0.53	+0.6
4,026,003	-		Pf6N2E2_3456	0.53	+1.0
4,026,003	-		Pf6N2E2_3456	0.53	+0.6
4,026,003	-		Pf6N2E2_3456	0.53	+1.0
4,026,003	-		Pf6N2E2_3456	0.53	+1.0
4,026,076	+		Pf6N2E2_3456	0.59	-0.5
4,026,076	+		Pf6N2E2_3456	0.59	+1.0
4,026,171	+		Pf6N2E2_3456	0.66	+1.0
4,026,172	-		Pf6N2E2_3456	0.67	+0.0
4,026,186	-		Pf6N2E2_3456	0.68	+1.0
4,026,314	+		Pf6N2E2_3456	0.78	-0.5
4,026,314	+		Pf6N2E2_3456	0.78	+1.0
4,026,315	-		Pf6N2E2_3456	0.78	-0.4
4,026,315	-		Pf6N2E2_3456	0.78	+1.0